rna6871, rna6871 (mRNA) Nannochloropsis gaditana

Overview
Namerna6871
Unique Namerna6871
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length510
Alignment locationCM002469.1:688541..688919 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101113g1.2224.mrna
Orig protein idgnl|cribi|Naga_101113g1.2224
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:688541..688919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101113g1gene6643Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6871rna6871-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23819.1cds6855Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6871 ID=rna6871|Name=rna6871|organism=Nannochloropsis gaditana|type=mRNA|length=510bp
ATGAATCGGACGTGGAGAAGGATTTATAGCCTCTGTGATAGCATAGCGTG
GAAAGGTAACTATCAGAGCAATAATAGCACACAGGGTGCTGCAGCTGAAA
AGAAACTGTGCATGTTTCCAATAAAGTGTCGGACAGCTCTGGCTTCTGAA
ATGCTTGGCTGCTTCCATGGATTTGAGATGGGAAACGTTGAAATTCCCGG
CGCTGGAATGATCAGGACCTCTGAGGCACGTGGTGACCTTTCCTGCGAAA
TAAGCGCAGTAAAACCAGGTGTGAGCCGGAGGAAACGGCAAGGGCTACGC
GGGAAACAAAGAAGAAATTGTGGTCCTGCACGCATCCTTCTTTCCACAAT
TGGGGGCTTGACACCTAAACTCGGCCTGGCAGTCACGGGATACATTCCAG
TATTTGCTCCTGACTTCCTATTACTTCAATTCACCTTGACATCCCTGAAC
ATCCAAAAATTTGATTTATTAAAGAAGTGTAGTACCTCCATCCGGGTGTG
GAGGAGCTGA
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protein sequence of rna6871

>rna6871-protein ID=rna6871-protein|Name=rna6871|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MGRGGFDGATACMDRERLLPASACLSLDVSSRVRLVAGLPVAAVFLSDLS
DICPVGMVGRKKRKTRKIRAKVK
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mRNA from alignment at CM002469.1:688541..688919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6871 ID=rna6871|Name=rna6871|organism=Nannochloropsis gaditana|type=mRNA|length=379bp|location=Sequence derived from alignment at CM002469.1:688541..688919- (Nannochloropsis gaditana)
ATGGGGAGGGGTGGCTTCGATGGCGCGACGGCCTGCATGGACCGGGAGTG
AAGACGCAGCGCCCGGGGATGGAATAGCAATAGGTAGGGGGGGCGTACCA
AGAAATCCGGGGAATGGAGGGACCTTCTGGCGGTGCCCGGACTTTCTTTT
TGGAACAGACGGCCCCCTTCCCCCCCACCCCCCCAAGTGTTGACGATTCG
CGAGACGTCTCCTGCCTGCCTCTGCTTGTCTGTCTTTAGATGTGTCCTCA
CGGGTTCGACTCGTGGCAGGTCTTCCCGTGGCGGCGGTTTTTCTTTCTGA
CCTGTCCGATATTTGTCCGGTTGGAATGGTTGGAAGAAAGAAGAGAAAAA
CACGCAAAATTCGGGCTAAAGTGAAATAA
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Coding sequence (CDS) from alignment at CM002469.1:688541..688919-

>rna6871 ID=rna6871|Name=rna6871|organism=Nannochloropsis gaditana|type=CDS|length=444bp|location=Sequence derived from alignment at CM002469.1:688541..688919- (Nannochloropsis gaditana)
ACGTCTCCTGCCTGCCTCTGCTTGTCTGTCTTTAGATGTGTCCTCACGGG
TTCGACTCGTGGCAGGTCTTCCCGTGGCGGCGGTTTTTCTTTCTGACCTG
TCCGATATTTGTCCGGTTGGAATGGTTGGAAGAAAGAAGAGAAAAACACG
CAAAATTCGGGCTAAAGTGAAATAAATGGGGAGGGGTGGCTTCGATGGCG
CGACGGCCTGCATGGACCGGGAACGTCTCCTGCCTGCCTCTGCTTGTCTG
TCTTTAGATGTGTCCTCACGGGTTCGACTCGTGGCAGGTCTTCCCGTGGC
GGCGGTTTTTCTTTCTGACCTGTCCGATATTTGTCCGGTTGGAATGGTTG
GAAGAAAGAAGAGAAAAACACGCAAAATTCGGGCTAAAGTGAAATAAATG
GGGAGGGGTGGCTTCGATGGCGCGACGGCCTGCATGGACCGGGA
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Synonyms
Publications