rna6869, rna6869 (mRNA) Nannochloropsis gaditana

Overview
Namerna6869
Unique Namerna6869
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1896
Alignment locationCM002469.1:685662..686936 +

Link to JBrowse

Properties
Property NameValue
Productpentatricopeptide repeat-containing protein chloroplastic
Orig transcript idgnl|cribi|Naga_101113g3.2223.mrna
Orig protein idgnl|cribi|Naga_101113g3.2223
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:685662..686936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101113g3gene6641Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6869rna6869-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23818.1cds6853Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6869 ID=rna6869|Name=rna6869|organism=Nannochloropsis gaditana|type=mRNA|length=1896bp
ATGACTCATTGTCGGGCCCGACATCGAGCACACGCACGCGTCGAAGCGAT
CCTGCTTTCCCCTCCCTTGAACTACGCTCAATACCTCCCACACACGAGCA
TTAAAAGGATGCCGCCATCACGTGGCTTTCTTCAACTAGCAACCATGCTG
ATTGTGTTAATGGTTGGGCATTCTTTTGTTCCAGGGGCTGTGCCTTTCAC
GTCGAAGTCGTCGCCTCCGGGAGTCAGGGGCATAGCAAACTTGCCTCGAA
GAAGAACATTTTTCCCGGTGGACGTGGAAAAAAGCAGCTTTGCCTCCCCA
CTGCAGCCACGACATTTTTCCCGTGTCCTTTTGAATGCCGCCGCTTCGGT
GGCAGATGTCGCACCCCTGGCATCTGCATTGTCCCCTTCTGGGAAGGAGA
GGACGAACCCTCAAGGGGAACGTCCACCCGAGAAGTCTCGTAATTCTTCC
CGGAAGAAAGGAGATTTCAGTGGCTCTTCCCCTGCCAACAAGGCTCGTAA
ATCCCCTACATCCAGCAAGAAGAAGGCGGGCACAGACACACCTGATGCCA
GCTTGGCTGCAGCCGCGCAAAACATCCAAAGGCTCGCGGCATCCGGCGCC
CCTCCTACGGACCGTCCTTCCCTCCCTCCCACGGGCACGAAACGAGGCCG
TCCTCCACAGAAGAAAAGCCCTAAACGTGGTCAACAGGGAGGACCAGCCG
CGACAAGATCCCCCCGGCAACAACGTCCTCCTTCATCTCCCGTCGAGGAT
GAAGAGGAGGTTATCCTAATGCAAGGGCCCAAGCTGCTGCGCCGAAATTT
TTCCTCGAACGCCGCTCCCCTCCCCCCTTCCTCCGCCTTCTCCACCAAGG
CAATGAAACGGCAGCAGAAAATGGCCTCCCTCCAGGGGGTGATAAAGGAG
GAGAAGGAGGGAGGGAAGCAGGGTGGCCGGGTGCTCTTCCCTCCCAAACT
CCCTCCCACGGCCCGTCTGCCCGACCCCGACAGCTCCAAGGCAAAGGAAA
TTCTGCAGCGGAAAGAAGCGGAAGCCGCCGCCGCCCTCGCAGCCATTCCC
CCTCCTCCCCCAACCGTGGAGGACGGGGCGCGGCCGCCGCCTGAAAAGGC
CAAGGCAACCGTCTCTCCCCCTCCCCTCCCCAAGCTCGCTGAGCCCTTCC
CTCCCCCTCCCTCCCCGCCTGCCCCTCCTCCATCCGCCACCCGGAAATCC
TCCCCCAGCTCCCGCAAAACCCCGTCGAGGCCGGCGTCCCCCCGAAAAAG
CCCGAAGACCAGCAATCCCCGACCCAAGGCCGCGAACGCCTCCCTCCCCG
CCGTAGAAGCCTTCATCACCTCCCTCCCCAACCCAGCCTCCCCCAAGACC
CGCAACGGTCGCCTCGCTGGGGTCAGCCCTCGGCCCAAAGCCCCTCCCTC
CTCCCCTTCCTCCCCTTCTCCCTCCTCCCGGGGCAACGCTACCTTCCTCG
CCGCGTCCTCCTCCCCCTTCGCCTCCGCGCGGTCGAGCAAGAAGATGTTC
ATCAGTCGGCGCGGGGAGATCACGATTCCCAACACGGGCCCGGGCTCCGC
GCGGGGCTTGGCTGCTCTCTTGGCCCTCAAGGATGGTTCTGGGGTGACTC
CCGCCGAGTTGAAAAGCGTCGTCAACGGCTGTTTCCGACGGCAGGACTGG
AAGGGCCTGCGACAGCTGGCGGGGAGCGACAACGGCCTCCCATTGAGCAA
GGACCTCCTGGACATGATGGTGACGGTGACGGCCAAGGCGGGAAAGAGTC
GGACCGCCCGCGCCTTGATGGATCTGATGATCTTAAGGTGGGGAGACTTT
GGGGAAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGACGGCA
GGAGGTGCGTCGTGGAAGCAGGTGGAAAGGAAGGAAGGGGAGGTAG
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protein sequence of rna6869

>rna6869-protein ID=rna6869-protein|Name=rna6869|organism=Nannochloropsis gaditana|type=polypeptide|length=424bp
PSLPPSLPSHLSRGIVLDVKSYNALLPAVLAEAPPFLQQEAVETFLGDLS
RRGFAPDRVTFNTILKHHASMGKEALALETLRMMKDQAGIVPDVVSFTTV
ITACGRDWDGAMRVLAQAEQESGVEKDARMYTAAMRVCANAGRRREVLEL
FERMKAMQATQEKRKGGKERKGEGESEEDRLSVLIAYNAVLEALKTDKEW
RQALQVLQEMRRVGLVPNVVNHNTVMDAIAEAGEAGEALALLKQMKVSRV
PADKRTYTAAIKAMIKSADVLQGRELFEEMCAAGITPDAVTYTTLMELYG
QAGNKEQMEELVQQMSRKRGFPRDVRAFTAVIRAYGRAGLWREALELLGT
MKARNVKPTVVSYGTAMAALAASGRHVEAFELLEAMKREGVEPNQVVLEW
ATEACRTAGRLDKVVQLQWKKLTA
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mRNA from alignment at CM002469.1:685662..686936+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6869 ID=rna6869|Name=rna6869|organism=Nannochloropsis gaditana|type=mRNA|length=1275bp|location=Sequence derived from alignment at CM002469.1:685662..686936+ (Nannochloropsis gaditana)
ccctccctccctccctccctcccttcccacctgtcCAGGGGGATCGTCCT
GGACGTGAAGTCCTAcaatgccctcctccccgccgtcttGGCCGAggctc
cccccttcctacaACAGGAAGCCGTGGAGACCTTCCTGGGGGACCTCTCT
CGGCGCGGCTTTGCTCCTGACCGGGTCACCTTCAACACCATCCTGAAGCA
CCACGCctcgatggggaaggaagcctTGGCCCTGGAGACGCTGCGGATGA
TGAAGGACCAGGCGGGCATTGTCCCCGACGTGGTGAGTTTCACCACCGTG
ATTACCGCCTGTGGACGGGATTGGGACGGGGCGATGCGGGTCTTGGCCCA
GGCTGAGCAGGAAAGTGGGGTGGAGAAAGATGCCCGGATGTATACGGCAG
CCATGCGGGTCTGCGCCAATGCGGGCCGACGGCGGGAAGTCCTGGAGCTC
TTCGAGCGGATGAAGGCGATGCAAGCGAcgcaggagaagaggaaaggagg
gaaggaaaggaagggggaaggggagagcgaaGAGGATCGCTTGAGCGTCC
TCATTGCCTACAACGCCGTCCTGGAAGCTCTGAAAACGGACAAGGAGTGG
CGGCAAGCCCTCCAAGTGCTTCAGGAGATGCGCCGCGTCGGTCTGGTCCC
CAATGTCGTCAATCACAACACGGTCATGGACGCGATCGCCGAGGCCggag
aggccggggaggcgCTGGCTCTGCTGAAACAAATGAAAGTGAGTCGGGTC
CCCGCCGACAAGCGCACGTACACCGCCGCCATCAAGGCCATGATCAAGTC
GGCCGacgtcctccagggccgggAGCTCTTTGAGGAAATGTGCGCAGCGG
GGATCACGCCGGACGCGGTCACTTACACGACCCTGATGGAACTCTACGGA
CAGGCAGGGAATAAGGAACAGATGGAAGAATTGGTCCAGCAAATGAGCCG
AAAACGAGGTTTCCCCCGGGACGTCCGGGCTTTCACGGCGGTAATCCGCG
CCTACGGTCGGGCCGGATTATGGCGCGAAGCGTTGGAATTGCTGGGGACC
ATGAAAGCTCGGAATGTGAAGCCGACGGTGGTGAGCTACGGGACGGCCAT
GGCGGCATTAGCGGCCAGCGGGCGTCACGTGGAGGCCTTCGAACTCTTGG
AGGCGATGAAacgggagggggtggagccAAACCAGGTGGTGTTGGAGTGG
GCTACCGAGGCCTGTCGTACCGCGGGGCGCTTGGACAAAGTGGTGCAACT
GCAGTGGAAAAAGCTGACGGCGTAG
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Coding sequence (CDS) from alignment at CM002469.1:685662..686936+

>rna6869 ID=rna6869|Name=rna6869|organism=Nannochloropsis gaditana|type=CDS|length=1275bp|location=Sequence derived from alignment at CM002469.1:685662..686936+ (Nannochloropsis gaditana)
ccctccctccctccctccctcccttcccacctgtcCAGGGGGATCGTCCT
GGACGTGAAGTCCTAcaatgccctcctccccgccgtcttGGCCGAggctc
cccccttcctacaACAGGAAGCCGTGGAGACCTTCCTGGGGGACCTCTCT
CGGCGCGGCTTTGCTCCTGACCGGGTCACCTTCAACACCATCCTGAAGCA
CCACGCctcgatggggaaggaagcctTGGCCCTGGAGACGCTGCGGATGA
TGAAGGACCAGGCGGGCATTGTCCCCGACGTGGTGAGTTTCACCACCGTG
ATTACCGCCTGTGGACGGGATTGGGACGGGGCGATGCGGGTCTTGGCCCA
GGCTGAGCAGGAAAGTGGGGTGGAGAAAGATGCCCGGATGTATACGGCAG
CCATGCGGGTCTGCGCCAATGCGGGCCGACGGCGGGAAGTCCTGGAGCTC
TTCGAGCGGATGAAGGCGATGCAAGCGAcgcaggagaagaggaaaggagg
gaaggaaaggaagggggaaggggagagcgaaGAGGATCGCTTGAGCGTCC
TCATTGCCTACAACGCCGTCCTGGAAGCTCTGAAAACGGACAAGGAGTGG
CGGCAAGCCCTCCAAGTGCTTCAGGAGATGCGCCGCGTCGGTCTGGTCCC
CAATGTCGTCAATCACAACACGGTCATGGACGCGATCGCCGAGGCCggag
aggccggggaggcgCTGGCTCTGCTGAAACAAATGAAAGTGAGTCGGGTC
CCCGCCGACAAGCGCACGTACACCGCCGCCATCAAGGCCATGATCAAGTC
GGCCGacgtcctccagggccgggAGCTCTTTGAGGAAATGTGCGCAGCGG
GGATCACGCCGGACGCGGTCACTTACACGACCCTGATGGAACTCTACGGA
CAGGCAGGGAATAAGGAACAGATGGAAGAATTGGTCCAGCAAATGAGCCG
AAAACGAGGTTTCCCCCGGGACGTCCGGGCTTTCACGGCGGTAATCCGCG
CCTACGGTCGGGCCGGATTATGGCGCGAAGCGTTGGAATTGCTGGGGACC
ATGAAAGCTCGGAATGTGAAGCCGACGGTGGTGAGCTACGGGACGGCCAT
GGCGGCATTAGCGGCCAGCGGGCGTCACGTGGAGGCCTTCGAACTCTTGG
AGGCGATGAAacgggagggggtggagccAAACCAGGTGGTGTTGGAGTGG
GCTACCGAGGCCTGTCGTACCGCGGGGCGCTTGGACAAAGTGGTGCAACT
GCAGTGGAAAAAGCTGACGGCGTAG
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Synonyms
Publications