rna6866, rna6866 (mRNA) Nannochloropsis gaditana

Overview
Namerna6866
Unique Namerna6866
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length609
Alignment locationCM002469.1:678087..679246 +

Link to JBrowse

Properties
Property NameValue
Producttransducin wd40 domain-containing protein
Orig transcript idgnl|cribi|Naga_100623g3.2038.mrna
Orig protein idgnl|cribi|Naga_100623g3.2038
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:678087..679246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100623g3gene6638Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6866rna6866-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23821.1cds6850Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6866 ID=rna6866|Name=rna6866|organism=Nannochloropsis gaditana|type=mRNA|length=609bp
ATGATGCCGACCAAGAAAGCTTCGGATCAGGATACCCGGAGATGGCACGC
TGCTAACGACACAGTTTTGGGAGGTCTCCCCAGAGACGAATCCGTAGTCC
TCCTCCTACAATCGCTGGAAAGGCTCGGGTACGACCAAACTGCGCAAACG
CTTGCCGCAGAAGAAGCAGCCAGGACGGCTTCCCGCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTGATCGCCCGACGGCAGC
AGGACAAGGAGGTGCTGGCTGACCTCCGACGAAGCGTGCTCAGGGGTGAC
TGGGAGCATGTGGAGCGGGAAATCCTTCCTGCCTTGTGCTTTCCGCCCCC
CTCGGCCCCCCCCCCTGCTCTCCGCGTCCGGATCGACTCGCCCTTGGGAG
GGCAGCAGGAGGCGAACCTGCAAAGAGGGGAGGGACAGCGGCAGGTGGAG
GAGCTTCGATTTCTCCTGCTTCGACAGCAGTATCTGGAGTTCTCCCGGAA
GTGTCGCCCGGGGACGCGGAGAGACACACGATCCCAAGAAAGAAGCCTCC
TCGCGGCCTTGTCACGGCGACAACAACGGCGGTTTCGATGCCCGAAGGCG
TCGAATTGA
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protein sequence of rna6866

>rna6866-protein ID=rna6866-protein|Name=rna6866|organism=Nannochloropsis gaditana|type=polypeptide|length=181bp
SPSSAPSSAPSSPPALPPYLLEEQEALHFRSVVVSFSVSTSRTSPSLLIN
LAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAG
SEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLA
SCSDDGSVRVWGPEGGGEGGKEGGMLVHVKG
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mRNA from alignment at CM002469.1:678087..679246+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6866 ID=rna6866|Name=rna6866|organism=Nannochloropsis gaditana|type=mRNA|length=1160bp|location=Sequence derived from alignment at CM002469.1:678087..679246+ (Nannochloropsis gaditana)
agcccttcctccgccccttcctccgccccttcctcgccccccgccctccc
tccctacctcttggaggagcaagaggcgCTTCATTTCCGGAGCGTCGTGG
TCTCCTTCTCGGTGTCGACCTCCCgtacctccccttccctcctcatcaac
cTTGCGGGCGGGCGCTTGTTGTCGTGGGATTTgcgaggggtggggaagaa
gaggacgttGGAAGGGAGACGGCAAGGGAGGTATCGCTTGAGGGCAGAGT
tcaacgagggagggggggagggagggagggaacgctTGGTCGCGGCAGGA
AGTGAAGACGGGCGTGTGTGcctgtggaaggaagggcggcgggagggcgg
ggggaaggaaggggcggaggaaccGATGGAGGAATTGAAGGGGCATGGCG
GGGTGGTGAACGACGTTGCCTGGTGCCCGTCGAATCCGCATGTactcgcc
tcctgctcggaTGACGGCTCAGTACGGGTCTGGGGCccagagggcggggg
ggagggcgggaaggagggcgggatgctGGTCCACGTGAAAGGATAGCGAC
TGAGCCTGCTGTGTGTAgatgagaggaagggggggcagggagggagggag
ggagggagggagggacataGGGGCGCAGTGTACTTCAGGCGGGGGAAGTG
GTTTCTGAGTGGATTGTACAgacgacagggagggagggaagggagggtag
gagggagggaaggaggaagggaaggaggcaggattCCGATGTGTAAGCGT
TGTCAAgaataggaagggaggcttGGGTAGTGGTCTCGGCCTCGCCACTC
GTAAAGGAAAAAAACGttgtggggggaaaggggaataggaagggaaagac
gacGGCAGGAGCTACAGAGGGTCGAGtcggtgggaaagaaaaagcaaccG
ATGGGAAATGGTCTTGGATGGATCGTATCTTCGTATCTTGAACCTGTATC
CAACCAGGTTGAAGTTCGATCCAAGCACATTGATAGTACGATCCACGTGG
CCGGGGTTGTCAGAGGGCGAGGCTCCCGTGAGCACGTAGACTAGCAGGGC
GCCTGGCGGGCACAACATTTTTAGAGTCGATGAATTGGTGTGTCATTACT
TTGTTGGGGTATAAATGCGTAGCCAttcgtcttcccctgccccctttaTC
ATAAATCGTG
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Coding sequence (CDS) from alignment at CM002469.1:678087..679246+

>rna6866 ID=rna6866|Name=rna6866|organism=Nannochloropsis gaditana|type=CDS|length=546bp|location=Sequence derived from alignment at CM002469.1:678087..679246+ (Nannochloropsis gaditana)
agcccttcctccgccccttcctccgccccttcctcgccccccgccctccc
tccctacctcttggaggagcaagaggcgCTTCATTTCCGGAGCGTCGTGG
TCTCCTTCTCGGTGTCGACCTCCCgtacctccccttccctcctcatcaac
cTTGCGGGCGGGCGCTTGTTGTCGTGGGATTTgcgaggggtggggaagaa
gaggacgttGGAAGGGAGACGGCAAGGGAGGTATCGCTTGAGGGCAGAGT
tcaacgagggagggggggagggagggagggaacgctTGGTCGCGGCAGGA
AGTGAAGACGGGCGTGTGTGcctgtggaaggaagggcggcgggagggcgg
ggggaaggaaggggcggaggaaccGATGGAGGAATTGAAGGGGCATGGCG
GGGTGGTGAACGACGTTGCCTGGTGCCCGTCGAATCCGCATGTactcgcc
tcctgctcggaTGACGGCTCAGTACGGGTCTGGGGCccagagggcggggg
ggagggcgggaaggagggcgggatgctGGTCCACGTGAAAGGATAG
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Synonyms
Publications