EWM23821.1, cds6850 (CDS) Nannochloropsis gaditana

Overview
NameEWM23821.1
Unique Namecds6850
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:678087..678632 +

Link to JBrowse

Properties
Property NameValue
Start range678087
Start range.
Protein idEWM23821.1
Producttransducin wd40 domain-containing protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100623g3.2038.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:678087..678632 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|585105075|gb|EWM23821.1| (transducin wd40 domain-containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 354.755 bits (909), Expect = 1.109e-123
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0
Query:    1 SPSSAPSSAPSSPPALPPYLLEEQEALHFRSVVVSFSVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGPEGGGEGGKEGGMLVHVKG 181
            SPSSAPSSAPSSPPALPPYLLEEQEALHFRSVVVSFSVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGPEGGGEGGKEGGMLVHVKG
Sbjct:    1 SPSSAPSSAPSSPPALPPYLLEEQEALHFRSVVVSFSVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGPEGGGEGGKEGGMLVHVKG 181          
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|1045396066|dbj|GAU22185.1| (hypothetical protein TSUD_252130 [Trifolium subterraneum])

HSP 1 Score: 90.8929 bits (224), Expect = 4.389e-18
Identity = 51/135 (37.78%), Postives = 78/135 (57.78%), Query Frame = 0
Query:   32 VVVSFSVSTSRTSPSLLINLAGGRLLSWDLRG----VGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWG 162
             + SFS+S  + +  LL+NL    +  W++ G    VGK +   G R+ R+ +R+ F      G ++  +A+GSED +V +W            +EEP+E L GH G VN V+W P+NPH+LAS SDD ++R+WG
Sbjct:  434 TITSFSLS--KDNKFLLVNLLNQEIHLWNIEGDPKLVGKYK---GHRRARFIIRSCFG-----GLKQAFIASGSEDSQVYIWHRS---------SEEPVETLPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 549          
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|357494081|ref|XP_003617329.1| (transducin/WD40 repeat protein [Medicago truncatula] >gi|355518664|gb|AET00288.1| transducin/WD40 repeat protein [Medicago truncatula])

HSP 1 Score: 88.5817 bits (218), Expect = 2.696e-17
Identity = 54/137 (39.42%), Postives = 80/137 (58.39%), Query Frame = 0
Query:   30 RSVVVSFSVSTSRTSPSLLINLAGGRLLSWDLRG----VGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWG 162
            R  + SFS+S  + +  LL+NL    +  W++ G    +GK +   G R+ R+ +R+ F  GG E   +  +A+GSED +V +W    R  G      EP+E L GH G VN V+W P+NPH+LAS SDD ++R+WG
Sbjct:  432 RQTITSFSLS--KDNKFLLVNLLNQEINLWNIEGNPKLIGKYK---GHRRSRFIIRSCF--GGLE---QAFIASGSEDSQVYIW---HRSSG------EPIEALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 549          
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|502098628|ref|XP_004491280.1| (PREDICTED: WD repeat-containing protein 26 [Cicer arietinum])

HSP 1 Score: 88.5817 bits (218), Expect = 2.912e-17
Identity = 52/135 (38.52%), Postives = 78/135 (57.78%), Query Frame = 0
Query:   32 VVVSFSVSTSRTSPSLLINLAGGRLLSWDLRG----VGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWG 162
             + SFS+S  + +  LL+NL    +  W++ G    VGK +   G R+ R+ +R+ F      G ++  +A+GSED +V +W    R  G      EP+E L GH G VN V+W P+NPH+LAS SDD ++R+WG
Sbjct:  434 TITSFSLS--KDNKFLLVNLLNQEIHLWNIEGDPKLVGKYK---GHRRARFVIRSCFG-----GLKQAFIASGSEDSQVYIW---HRSSG------EPIEALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 549          
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|557754999|ref|XP_005177242.1| (PREDICTED: WD repeat-containing protein 26 homolog [Musca domestica])

HSP 1 Score: 88.5817 bits (218), Expect = 2.965e-17
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 0
Query:   33 VVSFSVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGP 163
            +++FSV+++      L+N++   L  WDL      R+ +G RQ ++ + + F      G  E  VA+GSED  VC+W   R         EEP+ +L GH   VN V+W P  P +LAS SDD +VR+WGP
Sbjct:  476 IMTFSVNSADRLA--LLNISNQGLHLWDLEDKCLLRSFQGIRQSKFAIHSCFG-----GVNESFVASGSEDKHVCIWHIKR---------EEPLAKLSGHAKTVNCVSWNPVYPSLLASASDDSTVRIWGP 590          
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|907618124|ref|XP_013119264.1| (PREDICTED: WD repeat-containing protein 26 homolog [Stomoxys calcitrans] >gi|907618131|ref|XP_013119265.1| PREDICTED: WD repeat-containing protein 26 homolog [Stomoxys calcitrans] >gi|907618141|ref|XP_013119266.1| PREDICTED: WD repeat-containing protein 26 homolog [Stomoxys calcitrans])

HSP 1 Score: 88.1965 bits (217), Expect = 4.301e-17
Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = 0
Query:   33 VVSFSVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGP 163
            +++FSV+++      L+N++   L  WDL      R+ +G RQ  + + + F      G  E  VA+GSED  VC+W   R         EEP+ +L GH   VN V+W P  P +LAS SDD +VR+WGP
Sbjct:  490 IMTFSVNSADRLA--LLNISNQGLHLWDLEDKCLLRSFQGIRQSNFAIHSCFG-----GVNESFVASGSEDKHVCIWHIKR---------EEPLAKLSGHAKTVNCVSWNPVYPSLLASASDDSTVRIWGP 604          
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|1035931097|gb|OAY60683.1| (hypothetical protein MANES_01G131200 [Manihot esculenta] >gi|1035931098|gb|OAY60684.1| hypothetical protein MANES_01G131200 [Manihot esculenta])

HSP 1 Score: 87.8113 bits (216), Expect = 5.381e-17
Identity = 55/147 (37.41%), Postives = 82/147 (55.78%), Query Frame = 0
Query:   20 LLEEQEALHFRSVVVSFSVSTSRTSPSLLINLAGGRLLSWDLRG-VGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGPEG 165
            L+EE +      ++ SFS+S  R +  LL+NL    +  W++ G +      +G ++ R+ +R+ F  GG E   +  +A+GSED +V +W  G RE          +E L GH G VN V+W P NPH+LAS SDD +VR+WG  G
Sbjct:  437 LIEEDQ------IITSFSLS--RDNRFLLVNLLNQEIHLWNIDGGIKLVAKYKGHKRTRFVIRSCF--GGLE---QAFIASGSEDSQVYIWHRGSRE---------LVEALPGHTGAVNCVSWNPKNPHILASASDDRTVRIWGLNG 561          
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|827755825|gb|KLO10545.1| (WD40 repeat-like protein [Schizopora paradoxa])

HSP 1 Score: 87.4261 bits (215), Expect = 7.610e-17
Identity = 57/144 (39.58%), Postives = 75/144 (52.08%), Query Frame = 0
Query:   37 SVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHG-GVVNDVAWCPSNPHVLASCSDDGSVRVWG---PEGGGEGGKEGGML 176
            SV  S+ S   L+N A   +  WDL      R   G+RQGR+ +R+ F  GG +G     + +GSEDG+V +W    R+ G        +E L GHG G VNDVAW P N  + ASCSDD +VR+W    P   GE      +L
Sbjct:  527 SVKISQDSRYALVNQAPDEIQLWDLETARMARKFTGQRQGRHVIRSCF--GGVDGN---FIVSGSEDGKVYVW---HRDTGAL------LEILSGHGDGSVNDVAWNPVNERMFASCSDDKTVRIWESPLPRSMGEEDTRAHVL 656          
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|1108471244|emb|CRL00165.1| (CLUMA_CG013441, isoform A [Clunio marinus])

HSP 1 Score: 87.4261 bits (215), Expect = 8.882e-17
Identity = 53/149 (35.57%), Postives = 76/149 (51.01%), Query Frame = 0
Query:   19 YLLEEQEALHF---RSVVVSFSVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGPE 164
            Y  E +   H     + +++FSV++S      L+N++   L  WDLR     R  +G  QG Y + + F      G  E  +A+GSED  V +W             E+P+  L GH   VN V+W P  P +LASCSDDG+VR+WGP+
Sbjct:  457 YCFESRNDFHMIQEHNPIMTFSVNSSDRLA--LLNVSSQGLHLWDLRDKCMVRVFQGVVQGNYTVYSCFG-----GVNENFIASGSEDNTVYIWHIRN---------EQPLLTLTGHTRTVNCVSWNPIYPSMLASCSDDGTVRIWGPK 589          
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|1000866614|gb|KXN92272.1| (WD repeat-containing protein 26 [Leucoagaricus sp. SymC.cos])

HSP 1 Score: 86.6557 bits (213), Expect = 1.364e-16
Identity = 56/138 (40.58%), Postives = 71/138 (51.45%), Query Frame = 0
Query:   37 SVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHG-GVVNDVAWCPSNPHVLASCSDDGSVRVWGPEGGGEGGKEG 173
            SV  S  S   LINLA   +  WDL      R   G++QGR+ +R+ F      G     V +GSED ++ +W    RE G        +EEL GHG G VN VAW P+N  + ASCSDD +VR+W   GG   G  G
Sbjct:  506 SVKISHDSRFALINLAPDEIRLWDLEANRVARKYTGQKQGRHVIRSCFG-----GVDNHFVVSGSEDSKIYVW---HRESG------VILEELPGHGEGSVNSVAWNPTNERMFASCSDDHTVRIWESPGGAPEGSSG 629          
The following BLAST results are available for this feature:
BLAST of EWM23821.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105075|gb|EWM23821.1|1.109e-123100.00transducin wd40 domain-containing protein, partial... [more]
gi|1045396066|dbj|GAU22185.1|4.389e-1837.78hypothetical protein TSUD_252130 [Trifolium subter... [more]
gi|357494081|ref|XP_003617329.1|2.696e-1739.42transducin/WD40 repeat protein [Medicago truncatul... [more]
gi|502098628|ref|XP_004491280.1|2.912e-1738.52PREDICTED: WD repeat-containing protein 26 [Cicer ... [more]
gi|557754999|ref|XP_005177242.1|2.965e-1737.40PREDICTED: WD repeat-containing protein 26 homolog... [more]
gi|907618124|ref|XP_013119264.1|4.301e-1737.40PREDICTED: WD repeat-containing protein 26 homolog... [more]
gi|1035931097|gb|OAY60683.1|5.381e-1737.41hypothetical protein MANES_01G131200 [Manihot escu... [more]
gi|827755825|gb|KLO10545.1|7.610e-1739.58WD40 repeat-like protein [Schizopora paradoxa][more]
gi|1108471244|emb|CRL00165.1|8.882e-1735.57CLUMA_CG013441, isoform A [Clunio marinus][more]
gi|1000866614|gb|KXN92272.1|1.364e-1640.58WD repeat-containing protein 26 [Leucoagaricus sp.... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6866rna6866Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications