EWM23821.1, cds6850 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|585105075|gb|EWM23821.1| (transducin wd40 domain-containing protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 354.755 bits (909), Expect = 1.109e-123 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0
Query: 1 SPSSAPSSAPSSPPALPPYLLEEQEALHFRSVVVSFSVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGPEGGGEGGKEGGMLVHVKG 181
SPSSAPSSAPSSPPALPPYLLEEQEALHFRSVVVSFSVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGPEGGGEGGKEGGMLVHVKG
Sbjct: 1 SPSSAPSSAPSSPPALPPYLLEEQEALHFRSVVVSFSVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGPEGGGEGGKEGGMLVHVKG 181
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|1045396066|dbj|GAU22185.1| (hypothetical protein TSUD_252130 [Trifolium subterraneum]) HSP 1 Score: 90.8929 bits (224), Expect = 4.389e-18 Identity = 51/135 (37.78%), Postives = 78/135 (57.78%), Query Frame = 0
Query: 32 VVVSFSVSTSRTSPSLLINLAGGRLLSWDLRG----VGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWG 162
+ SFS+S + + LL+NL + W++ G VGK + G R+ R+ +R+ F G ++ +A+GSED +V +W +EEP+E L GH G VN V+W P+NPH+LAS SDD ++R+WG
Sbjct: 434 TITSFSLS--KDNKFLLVNLLNQEIHLWNIEGDPKLVGKYK---GHRRARFIIRSCFG-----GLKQAFIASGSEDSQVYIWHRS---------SEEPVETLPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 549
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|357494081|ref|XP_003617329.1| (transducin/WD40 repeat protein [Medicago truncatula] >gi|355518664|gb|AET00288.1| transducin/WD40 repeat protein [Medicago truncatula]) HSP 1 Score: 88.5817 bits (218), Expect = 2.696e-17 Identity = 54/137 (39.42%), Postives = 80/137 (58.39%), Query Frame = 0
Query: 30 RSVVVSFSVSTSRTSPSLLINLAGGRLLSWDLRG----VGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWG 162
R + SFS+S + + LL+NL + W++ G +GK + G R+ R+ +R+ F GG E + +A+GSED +V +W R G EP+E L GH G VN V+W P+NPH+LAS SDD ++R+WG
Sbjct: 432 RQTITSFSLS--KDNKFLLVNLLNQEINLWNIEGNPKLIGKYK---GHRRSRFIIRSCF--GGLE---QAFIASGSEDSQVYIW---HRSSG------EPIEALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 549
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|502098628|ref|XP_004491280.1| (PREDICTED: WD repeat-containing protein 26 [Cicer arietinum]) HSP 1 Score: 88.5817 bits (218), Expect = 2.912e-17 Identity = 52/135 (38.52%), Postives = 78/135 (57.78%), Query Frame = 0
Query: 32 VVVSFSVSTSRTSPSLLINLAGGRLLSWDLRG----VGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWG 162
+ SFS+S + + LL+NL + W++ G VGK + G R+ R+ +R+ F G ++ +A+GSED +V +W R G EP+E L GH G VN V+W P+NPH+LAS SDD ++R+WG
Sbjct: 434 TITSFSLS--KDNKFLLVNLLNQEIHLWNIEGDPKLVGKYK---GHRRARFVIRSCFG-----GLKQAFIASGSEDSQVYIW---HRSSG------EPIEALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 549
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|557754999|ref|XP_005177242.1| (PREDICTED: WD repeat-containing protein 26 homolog [Musca domestica]) HSP 1 Score: 88.5817 bits (218), Expect = 2.965e-17 Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 0
Query: 33 VVSFSVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGP 163
+++FSV+++ L+N++ L WDL R+ +G RQ ++ + + F G E VA+GSED VC+W R EEP+ +L GH VN V+W P P +LAS SDD +VR+WGP
Sbjct: 476 IMTFSVNSADRLA--LLNISNQGLHLWDLEDKCLLRSFQGIRQSKFAIHSCFG-----GVNESFVASGSEDKHVCIWHIKR---------EEPLAKLSGHAKTVNCVSWNPVYPSLLASASDDSTVRIWGP 590
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|907618124|ref|XP_013119264.1| (PREDICTED: WD repeat-containing protein 26 homolog [Stomoxys calcitrans] >gi|907618131|ref|XP_013119265.1| PREDICTED: WD repeat-containing protein 26 homolog [Stomoxys calcitrans] >gi|907618141|ref|XP_013119266.1| PREDICTED: WD repeat-containing protein 26 homolog [Stomoxys calcitrans]) HSP 1 Score: 88.1965 bits (217), Expect = 4.301e-17 Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = 0
Query: 33 VVSFSVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGP 163
+++FSV+++ L+N++ L WDL R+ +G RQ + + + F G E VA+GSED VC+W R EEP+ +L GH VN V+W P P +LAS SDD +VR+WGP
Sbjct: 490 IMTFSVNSADRLA--LLNISNQGLHLWDLEDKCLLRSFQGIRQSNFAIHSCFG-----GVNESFVASGSEDKHVCIWHIKR---------EEPLAKLSGHAKTVNCVSWNPVYPSLLASASDDSTVRIWGP 604
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|1035931097|gb|OAY60683.1| (hypothetical protein MANES_01G131200 [Manihot esculenta] >gi|1035931098|gb|OAY60684.1| hypothetical protein MANES_01G131200 [Manihot esculenta]) HSP 1 Score: 87.8113 bits (216), Expect = 5.381e-17 Identity = 55/147 (37.41%), Postives = 82/147 (55.78%), Query Frame = 0
Query: 20 LLEEQEALHFRSVVVSFSVSTSRTSPSLLINLAGGRLLSWDLRG-VGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGPEG 165
L+EE + ++ SFS+S R + LL+NL + W++ G + +G ++ R+ +R+ F GG E + +A+GSED +V +W G RE +E L GH G VN V+W P NPH+LAS SDD +VR+WG G
Sbjct: 437 LIEEDQ------IITSFSLS--RDNRFLLVNLLNQEIHLWNIDGGIKLVAKYKGHKRTRFVIRSCF--GGLE---QAFIASGSEDSQVYIWHRGSRE---------LVEALPGHTGAVNCVSWNPKNPHILASASDDRTVRIWGLNG 561
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|827755825|gb|KLO10545.1| (WD40 repeat-like protein [Schizopora paradoxa]) HSP 1 Score: 87.4261 bits (215), Expect = 7.610e-17 Identity = 57/144 (39.58%), Postives = 75/144 (52.08%), Query Frame = 0
Query: 37 SVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHG-GVVNDVAWCPSNPHVLASCSDDGSVRVWG---PEGGGEGGKEGGML 176
SV S+ S L+N A + WDL R G+RQGR+ +R+ F GG +G + +GSEDG+V +W R+ G +E L GHG G VNDVAW P N + ASCSDD +VR+W P GE +L
Sbjct: 527 SVKISQDSRYALVNQAPDEIQLWDLETARMARKFTGQRQGRHVIRSCF--GGVDGN---FIVSGSEDGKVYVW---HRDTGAL------LEILSGHGDGSVNDVAWNPVNERMFASCSDDKTVRIWESPLPRSMGEEDTRAHVL 656
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|1108471244|emb|CRL00165.1| (CLUMA_CG013441, isoform A [Clunio marinus]) HSP 1 Score: 87.4261 bits (215), Expect = 8.882e-17 Identity = 53/149 (35.57%), Postives = 76/149 (51.01%), Query Frame = 0
Query: 19 YLLEEQEALHF---RSVVVSFSVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHGGVVNDVAWCPSNPHVLASCSDDGSVRVWGPE 164
Y E + H + +++FSV++S L+N++ L WDLR R +G QG Y + + F G E +A+GSED V +W E+P+ L GH VN V+W P P +LASCSDDG+VR+WGP+
Sbjct: 457 YCFESRNDFHMIQEHNPIMTFSVNSSDRLA--LLNVSSQGLHLWDLRDKCMVRVFQGVVQGNYTVYSCFG-----GVNENFIASGSEDNTVYIWHIRN---------EQPLLTLTGHTRTVNCVSWNPIYPSMLASCSDDGTVRIWGPK 589
BLAST of EWM23821.1 vs. NCBI_GenBank
Match: gi|1000866614|gb|KXN92272.1| (WD repeat-containing protein 26 [Leucoagaricus sp. SymC.cos]) HSP 1 Score: 86.6557 bits (213), Expect = 1.364e-16 Identity = 56/138 (40.58%), Postives = 71/138 (51.45%), Query Frame = 0
Query: 37 SVSTSRTSPSLLINLAGGRLLSWDLRGVGKKRTLEGRRQGRYRLRAEFNEGGGEGGRERLVAAGSEDGRVCLWKEGRREGGGKEGAEEPMEELKGHG-GVVNDVAWCPSNPHVLASCSDDGSVRVWGPEGGGEGGKEG 173
SV S S LINLA + WDL R G++QGR+ +R+ F G V +GSED ++ +W RE G +EEL GHG G VN VAW P+N + ASCSDD +VR+W GG G G
Sbjct: 506 SVKISHDSRFALINLAPDEIRLWDLEANRVARKYTGQKQGRHVIRSCFG-----GVDNHFVVSGSEDSKIYVW---HRESG------VILEELPGHGEGSVNSVAWNPTNERMFASCSDDHTVRIWESPGGAPEGSSG 629 The following BLAST results are available for this feature:
BLAST of EWM23821.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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