rna6864, rna6864 (mRNA) Nannochloropsis gaditana

Overview
Namerna6864
Unique Namerna6864
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length881
Alignment locationCM002469.1:673283..674268 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101133g3.10295.mrna
Orig protein idgnl|cribi|Naga_101133g3.10295
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:673283..674268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101133g3gene6636Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6864rna6864-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23825.1cds6848Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6864 ID=rna6864|Name=rna6864|organism=Nannochloropsis gaditana|type=mRNA|length=881bp
TGACCAGAGCACGTGCGAATTTGTCCAGGGTCAGGAATCACTTTGTAGCA
TGTCGCTGGATGTTGTGAGACGGGGTGGGTCCATGTAATATGGTTCTTTC
CTGAGTTATTTTTTTGGGTTCTTGACCTCCCATCCACGCTACGAGCTGGA
GTGCCCAATACTTTGTCAAGGATGTTATGGAGACATTTCAGACCCAGAGA
TGCGTGTCCCATGTGGACAAAATGTGCCTGGCACTGTCTCGCGCGTGCAT
GGACGACCTGTGGCACATGGTGCGGGCAAGTCCCCCGCACTTTGGAAACG
AGTGTTTTCACCAGCGTTTTATTAGGCCTTAGGTGGGATTTATCCTTCGA
TCACACTCTCCATGGTCTTCCAGACCTACGGCCGCAACGATACCCCAGCG
ACATGTTTTGCATTGTAAATGTGCACATAGTCCTGAGGGCTGATGCTTTA
TATGTACTCTTTCTTTTGATTTCCAGAGCCACGAGGAGTGCACAAGCACA
GCCCTTCCAAGGCCCCGCTGGTGCTGCTTCGAATTTTTATCTTGTCGGTG
GCTTTTTTTTTAATTTCCACCCACCACAGTCGGATTTACGGTCACACAAG
CAACGATTTTCTTCCTTTCTTCCTCTGTAGCCGTCACCGAAGAGTAGGAG
ACAAGTCGGTCATACAGACTTGAAGAAGAAGGGACTTTCTGCGCAGCCTT
TGTTCCCCACCATGGGTAGTAACAGCCCGGTCTCGGCCCACCGGCCCTCT
TCCTCCCCCACCCCTTCTTCCCTCCCTCCTTCCCTCCCGCCCTCCATTCC
TTCCTCCCTCACACTTCCTCCCCACACTGGTTTGTCCCGACCTGCTTCTG
CCCGTCCTTCCCCCTCGCCTACGGCCCGCCG
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protein sequence of rna6864

>rna6864-protein ID=rna6864-protein|Name=rna6864|organism=Nannochloropsis gaditana|type=polypeptide|length=149bp
MFLLPSSSQSPVFLGRPSGGASDAESPRRAFKHGWRTAAGGKGGACQPPQ
LHFVAKPIGPIGVVGVGVSARRWGSGWRREGGGREGVDMKGGRGGGEERC
ERKGQEGRKGGKERCEKEGGEGRNAGEEKELREPLEGRVESAGGGGARK
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mRNA from alignment at CM002469.1:673283..674268+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6864 ID=rna6864|Name=rna6864|organism=Nannochloropsis gaditana|type=mRNA|length=986bp|location=Sequence derived from alignment at CM002469.1:673283..674268+ (Nannochloropsis gaditana)
cCGCCTTGGGACCGTCCGCTCCGTGCCTAGCCAACCatgttcctccttcc
ctcctcatcacagAGCCCAGTATTTCTTGGACGACCCTCGGGAGGTGCGT
CGGATGCTGAATCTCCTCGCAGAGCGTTCAAGCATGGGTGGCGGACTGCA
GCAggcggcaagggaggggcatgcCAACCTCCCCAGCTCCATTTCGTTGC
AAAGCCTATCGGTCCAATCGGCGTCGTCGGTGTCGGAGTGAGcgcaagga
ggtgggggtcagggtggagaagggagggaggagggagggagggggtggac
atgaaaggggggaggggaggaggggaagagagatgtgaaaggaaaggaca
agaggggaggaaaggaggaaaagagagatgtgaaaaggagggaggagagg
gaagaaatgcaggggaagagaaagagttGCGAGAGCCGCTTGAGGGAAGA
GTGGAGAGTgccggcggcggaggggcgcGGAAATAATACACATGCGAGGC
AGGATCATCATGTTACGAAGGAACTATTACGCCGCGAAAATCATGCGGAA
AGAGGGCAGGATGAAGAAACGTGGGGACGCTGGGTTTGATGGAGACCCAC
CtggctgggagggaaaacaaaTATGTATCAGGGGGGAATGTTGATGCCGG
AATATACGaaaggaggcaagaggatatggcggggaaggggcattGTTGGC
ATATCGACGGGCCATTtttgggaaggcggggatgcGGGAGTCAGGTGTCG
TGATCCAAACGGTTGAAGGTTTTAGAAtgcgaaaagaaaggagagaggag
ggaaatcaACCATTTTGTCAGGAGCGGGGCGTgtgcaggcggagggagga
agtagtCGACGAGGGCAATAAGCAGGTCAGTCAGAGACAAATATTGTAGT
GTATCGTGAAAAAAGCTGCTCCACACCACGAGTGGTGTAAAAATGTGTAG
TGCGTGGAAGGAACCATGAAATCGAGGGCGTACGGT
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Coding sequence (CDS) from alignment at CM002469.1:673283..674268+

>rna6864 ID=rna6864|Name=rna6864|organism=Nannochloropsis gaditana|type=CDS|length=450bp|location=Sequence derived from alignment at CM002469.1:673283..674268+ (Nannochloropsis gaditana)
atgttcctccttccctcctcatcacagAGCCCAGTATTTCTTGGACGACC
CTCGGGAGGTGCGTCGGATGCTGAATCTCCTCGCAGAGCGTTCAAGCATG
GGTGGCGGACTGCAGCAggcggcaagggaggggcatgcCAACCTCCCCAG
CTCCATTTCGTTGCAAAGCCTATCGGTCCAATCGGCGTCGTCGGTGTCGG
AGTGAGcgcaaggaggtgggggtcagggtggagaagggagggaggaggga
gggagggggtggacatgaaaggggggaggggaggaggggaagagagatgt
gaaaggaaaggacaagaggggaggaaaggaggaaaagagagatgtgaaaa
ggagggaggagagggaagaaatgcaggggaagagaaagagttGCGAGAGC
CGCTTGAGGGAAGAGTGGAGAGTgccggcggcggaggggcgcGGAAATAA
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Synonyms
Publications