rna6856, rna6856 (mRNA) Nannochloropsis gaditana

Overview
Namerna6856
Unique Namerna6856
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1123
Alignment locationCM002469.1:650873..652666 +

Link to JBrowse

Properties
Property NameValue
Productcalmodulin like myosin light chain
Orig transcript idgnl|cribi|Naga_100522g2.1286.mrna
Orig protein idgnl|cribi|Naga_100522g2.1286
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:650873..652666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100522g2gene6628Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6856rna6856-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23835.1cds6840Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6856 ID=rna6856|Name=rna6856|organism=Nannochloropsis gaditana|type=mRNA|length=1123bp
ATGGGTTACAGGACCCGCACTATGTTCCCTTGGCCTCTTGTCGGTCGATC
AAGCCTCCTTCTCGCCTCCCTCCTACTTGCCGCTGGCCATTTTCCTCGGA
CGGGTGTTGCCACGGCTCCCCCAGCTCTACCCTTGTCCGCTTCTGAATAC
AGTGTGGTCACTCTGGGCGACTCGTCCTCGGGTGTTGACGTGGATGTGTT
CCTGGATCTCGTCTGTATCGACACCAAGAAAGCCTGGCCGGTGATAAAGC
AAGTTATTCAAACCTACGATCGTGCAGTACAATGGCGCTTCCATCAGTTC
CCTCTGCCCTATCACACGAACGCCTTTATGGTGGCCAAAGGGGCCGTTGT
CGCTGCAACCTACGGGAACGACACGGCGGCGCTCAGGTACATGGACATTG
CCTTCGCGCGTCAGATCCAGGTCTCGAACGAGCTCACGCAAGGCATGACG
TACAAGGCAGTGGAAGGCGTGGTCGCTGCGTGGGTGCAGGAGGCCACTGG
CCTCGAGAGAGAGGTGGTGAGAAGGAAGCTCCAGGAAGGGGGGGTGGAGG
AGGCAGTACGTTTCTCTTTCAAATACGCAACGATTCGTTCCATCTTTGGC
ACCCCCATGTTCGTGATCAACCAGATGCTGGTGCCTGGGTTGGACGGTGG
GAGTGACGTGATGGATTGGGAAGAGTACTTGGCGCCTTTACTGACACAAA
TGGCCAGGGAAAGCTGAGGAAGGGGTTGTCTAGTGTTGAGAGATATGCCT
TGTGCTGTGCCCTGTAAACACATTTGGAGAGACAGATTCCTGAGTCTGGG
GGCAAATATTGTATAGGAAAATAGAAACTCTTAACGCCGCAATCTCTGAG
CTGCGGCTGCTTTTCAAGGTGTAGAGGTTTTCAGGGTACGAAGCCCCATG
TACATGGCCGAAAAATGCAATATGTATGACTAGATTTTTACCCTGTGAAT
TCATCAACTTACGTCTGAGGTTGAATGAATGACACAAAAGACAGCTTCTT
TCAATATCGACAGAAAAGAAAAAGGGCTTCTAAAAAGAAACATGGCAGGC
TCAAACAGGGTCAGAACATTTGTGATGTCGACGGTAGGACTTGAAGAGAC
ACTAACCAGGACATGTCTTTTTA
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protein sequence of rna6856

>rna6856-protein ID=rna6856-protein|Name=rna6856|organism=Nannochloropsis gaditana|type=polypeptide|length=508bp
MKAIIQKANNNLNKSEEQNRRSVHQHESIALVSRNDSKHDDGLEMEDTGR
DEQQEQSNKSTPGYIMSMANAMATGAGERHRETPRQEPNNYQPGGPGQEQ
RALSSPPYRQATASPHDGRGKPLPHDATPTEAPAPNPREGQTAGESSTSL
QTSISATVSHHAEGNAHLTPLSRSRSGSSPSLSSTGSMEHDVQPARGKKS
GRRGPRGRGIHHPGGYSSLPASHGTEQGSNLPSKMNIVANLAYVRKTQEV
VSLRHLSTGGPAWTKILGMIAGGTVTGHECYGLAATFSFFSSSPPPSPTL
LLLLVLHQGLCLLLGFSLLLLECRSVFCSTFLHKKTREYFKFLSYLWGRG
LLYLVTGALLALRFLSTPTASPPASSLLFSPPSSSSSSPPLPSPTYLDSF
LSLYLALLGALLLLLSLHYARRLSSTSHPPTLLPHHTTTDPLLLLRAKFD
RADIYSQGKIPSTDLAMICAELGSRLSHQELETAILTLDANRHGEVEYDD
FVEWWQGR
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mRNA from alignment at CM002469.1:650873..652666+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6856 ID=rna6856|Name=rna6856|organism=Nannochloropsis gaditana|type=mRNA|length=1794bp|location=Sequence derived from alignment at CM002469.1:650873..652666+ (Nannochloropsis gaditana)
CTTGTTCTCATTCTTCAACATTGTATGCCATTTTCACTCCATTTATACGC
AGCAATTCTAAATGAAGGCAATAATCCAAAAGGCCAACAATAATTTGAAC
AAATCCGAAGAGCAGAACCGTCGAAGTGTCCATCAGCATGAGTCAATTGC
ATTAGTTTCCAGAAACGACAGCAAACACGATGACGGGCTGGAGATGGAAG
ACACGGGCAGGGACGAACAGCAAGAGCAATCAAACAAATCAACCCCAGGG
TATATCATGAGCATGGCCAATGCTATGGCGACAGGGGCAGGCGAGCGACA
CCGTGAAACGCCACGTCAAGAGCCCAACAATTACCAGCCCGGCGGCCCAG
GACAGGAACAGCGTGCTCTCTCATCTCCGCCCTATAGGCAAGCGACAGCA
TCGCCACATGACGGTAGGGGCAAGCCCTTACCACATGATGCCACCCCAAC
GGaggcccctgcccccaaCCCCAGGGAGGGACAGACCGCTGGAGAGAGCA
GCACTAGTCTCCAAACCTCTATCAGTGCAACCGTCAGCCACCATGCGGAG
GGAAACGCCCACCTTACACCGTTGTCGCGTagcaggagcgggagcagTCC
CTCCTTATCTTCCACTGGGTCCATGGAGCACGACGTCCAACCGGCCCGGG
GCAAGAaaagcgggaggcgggggccccGCGGGCGGGGAATCCACCACCCA
GGTGGGTACTCGtccttgcctgcctctcACGGGACCGAGCAGGGATCGAA
CCTGCCCAGCAAGATGAACATCGTGGCCAATCTTGCCTATGTCCGCAAGA
CCCAAGAAGTCGTGAGCTTGCGCCATTTGTCCACGGGGGGCCCCGCGTGG
ACCAAGATCCTCGGCATGATTGCCGGGGGAACGGTCACGGGACATGAATG
CTACGGCCTCGCCGccactttttcctttttttcctcctcccctccccctt
ccccaactcttctcctcctccttgtcctccaccaaggcctctgcctcctg
ctcggcttctctctcctcctcctcgaatGTCGCTCCGTCTTTTGCAGCAC
CTTCCTGCACAAGAAAACCCGGGAATATTTTAAATTTCTCTCCTATTTGT
GGGGACGGGGCCTTCTCTACCTCGTCAccggcgccctcctcgccctacGT
TTCTTGTCCACTCCCActgcttccccgcccgcttcatctctccttttctc
tcctccctcctcctcctcctccagcccccctctcccttccccgaccTACC
TGgactccttcctttccctctatctcgccctccttggcgccctcctcctc
cttctcagcctcCACTACGCCCGTCgactctcctccacctcccaccctcc
caccctcctgccCCATCACACCACCAccgaccccctccttctccttcgcg
ccaaattcGACCGGGCGGACATCTATTCGCAGGGTAAGATTCCTTCCACG
GATTTGGCGATGATATGCGCCGAACTAGGATCCCGACTCTCGCATCAGGA
GTTGGAAACGGCCATTTTGACGTTAGACGCCAACAGACATGGGGAGGTGG
AGTATGACGATTTTGTGGAATGGTGGCAGGGAAgatgacgagggaggaag
ggagggagagaggaagggagggagggagggaggggaagtcgGACGGCTTC
CCCCACGATGGTGGGGGacggccaggaaggagggcggttTCCTCACTGGG
CAAAGAAATCACCGACCGGTGATTATCGGCAAATTTCAGGGATGTTCCGT
GTTGCCATGCCCTGGTCGATGGCCCCCAAAAATTGATGCGTACC
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Coding sequence (CDS) from alignment at CM002469.1:650873..652666+

>rna6856 ID=rna6856|Name=rna6856|organism=Nannochloropsis gaditana|type=CDS|length=1527bp|location=Sequence derived from alignment at CM002469.1:650873..652666+ (Nannochloropsis gaditana)
ATGAAGGCAATAATCCAAAAGGCCAACAATAATTTGAACAAATCCGAAGA
GCAGAACCGTCGAAGTGTCCATCAGCATGAGTCAATTGCATTAGTTTCCA
GAAACGACAGCAAACACGATGACGGGCTGGAGATGGAAGACACGGGCAGG
GACGAACAGCAAGAGCAATCAAACAAATCAACCCCAGGGTATATCATGAG
CATGGCCAATGCTATGGCGACAGGGGCAGGCGAGCGACACCGTGAAACGC
CACGTCAAGAGCCCAACAATTACCAGCCCGGCGGCCCAGGACAGGAACAG
CGTGCTCTCTCATCTCCGCCCTATAGGCAAGCGACAGCATCGCCACATGA
CGGTAGGGGCAAGCCCTTACCACATGATGCCACCCCAACGGaggcccctg
cccccaaCCCCAGGGAGGGACAGACCGCTGGAGAGAGCAGCACTAGTCTC
CAAACCTCTATCAGTGCAACCGTCAGCCACCATGCGGAGGGAAACGCCCA
CCTTACACCGTTGTCGCGTagcaggagcgggagcagTCCCTCCTTATCTT
CCACTGGGTCCATGGAGCACGACGTCCAACCGGCCCGGGGCAAGAaaagc
gggaggcgggggccccGCGGGCGGGGAATCCACCACCCAGGTGGGTACTC
GtccttgcctgcctctcACGGGACCGAGCAGGGATCGAACCTGCCCAGCA
AGATGAACATCGTGGCCAATCTTGCCTATGTCCGCAAGACCCAAGAAGTC
GTGAGCTTGCGCCATTTGTCCACGGGGGGCCCCGCGTGGACCAAGATCCT
CGGCATGATTGCCGGGGGAACGGTCACGGGACATGAATGCTACGGCCTCG
CCGccactttttcctttttttcctcctcccctcccccttccccaactctt
ctcctcctccttgtcctccaccaaggcctctgcctcctgctcggcttctc
tctcctcctcctcgaatGTCGCTCCGTCTTTTGCAGCACCTTCCTGCACA
AGAAAACCCGGGAATATTTTAAATTTCTCTCCTATTTGTGGGGACGGGGC
CTTCTCTACCTCGTCAccggcgccctcctcgccctacGTTTCTTGTCCAC
TCCCActgcttccccgcccgcttcatctctccttttctctcctccctcct
cctcctcctccagcccccctctcccttccccgaccTACCTGgactccttc
ctttccctctatctcgccctccttggcgccctcctcctccttctcagcct
cCACTACGCCCGTCgactctcctccacctcccaccctcccaccctcctgc
cCCATCACACCACCAccgaccccctccttctccttcgcgccaaattcGAC
CGGGCGGACATCTATTCGCAGGGTAAGATTCCTTCCACGGATTTGGCGAT
GATATGCGCCGAACTAGGATCCCGACTCTCGCATCAGGAGTTGGAAACGG
CCATTTTGACGTTAGACGCCAACAGACATGGGGAGGTGGAGTATGACGAT
TTTGTGGAATGGTGGCAGGGAAgatga
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Synonyms
Publications