EWM23835.1, cds6840 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23835.1
Unique Name	cds6840
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002469.1:650934..652460 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23835.1
Product	calmodulin like myosin light chain
Orig transcript id	gnl\|cribi\|Naga_100522g2.1286.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:650934..652460 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair

Homology

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BLAST of EWM23835.1 vs. NCBI_GenBank
Match: gi|585105100|gb|EWM23835.1| (calmodulin like myosin light chain [Nannochloropsis gaditana])

HSP 1 Score: 1030.01 bits (2662), Expect = 0.000e+0
Identity = 508/508 (100.00%), Postives = 508/508 (100.00%), Query Frame = 0

Query:    1 MKAIIQKANNNLNKSEEQNRRSVHQHESIALVSRNDSKHDDGLEMEDTGRDEQQEQSNKSTPGYIMSMANAMATGAGERHRETPRQEPNNYQPGGPGQEQRALSSPPYRQATASPHDGRGKPLPHDATPTEAPAPNPREGQTAGESSTSLQTSISATVSHHAEGNAHLTPLSRSRSGSSPSLSSTGSMEHDVQPARGKKSGRRGPRGRGIHHPGGYSSLPASHGTEQGSNLPSKMNIVANLAYVRKTQEVVSLRHLSTGGPAWTKILGMIAGGTVTGHECYGLAATFSFFSSSPPPSPTLLLLLVLHQGLCLLLGFSLLLLECRSVFCSTFLHKKTREYFKFLSYLWGRGLLYLVTGALLALRFLSTPTASPPASSLLFSPPSSSSSSPPLPSPTYLDSFLSLYLALLGALLLLLSLHYARRLSSTSHPPTLLPHHTTTDPLLLLRAKFDRADIYSQGKIPSTDLAMICAELGSRLSHQELETAILTLDANRHGEVEYDDFVEWWQGR 508
            MKAIIQKANNNLNKSEEQNRRSVHQHESIALVSRNDSKHDDGLEMEDTGRDEQQEQSNKSTPGYIMSMANAMATGAGERHRETPRQEPNNYQPGGPGQEQRALSSPPYRQATASPHDGRGKPLPHDATPTEAPAPNPREGQTAGESSTSLQTSISATVSHHAEGNAHLTPLSRSRSGSSPSLSSTGSMEHDVQPARGKKSGRRGPRGRGIHHPGGYSSLPASHGTEQGSNLPSKMNIVANLAYVRKTQEVVSLRHLSTGGPAWTKILGMIAGGTVTGHECYGLAATFSFFSSSPPPSPTLLLLLVLHQGLCLLLGFSLLLLECRSVFCSTFLHKKTREYFKFLSYLWGRGLLYLVTGALLALRFLSTPTASPPASSLLFSPPSSSSSSPPLPSPTYLDSFLSLYLALLGALLLLLSLHYARRLSSTSHPPTLLPHHTTTDPLLLLRAKFDRADIYSQGKIPSTDLAMICAELGSRLSHQELETAILTLDANRHGEVEYDDFVEWWQGR
Sbjct:    1 MKAIIQKANNNLNKSEEQNRRSVHQHESIALVSRNDSKHDDGLEMEDTGRDEQQEQSNKSTPGYIMSMANAMATGAGERHRETPRQEPNNYQPGGPGQEQRALSSPPYRQATASPHDGRGKPLPHDATPTEAPAPNPREGQTAGESSTSLQTSISATVSHHAEGNAHLTPLSRSRSGSSPSLSSTGSMEHDVQPARGKKSGRRGPRGRGIHHPGGYSSLPASHGTEQGSNLPSKMNIVANLAYVRKTQEVVSLRHLSTGGPAWTKILGMIAGGTVTGHECYGLAATFSFFSSSPPPSPTLLLLLVLHQGLCLLLGFSLLLLECRSVFCSTFLHKKTREYFKFLSYLWGRGLLYLVTGALLALRFLSTPTASPPASSLLFSPPSSSSSSPPLPSPTYLDSFLSLYLALLGALLLLLSLHYARRLSSTSHPPTLLPHHTTTDPLLLLRAKFDRADIYSQGKIPSTDLAMICAELGSRLSHQELETAILTLDANRHGEVEYDDFVEWWQGR 508

The following BLAST results are available for this feature:

BLAST of EWM23835.1 vs. NCBI_GenBank

BLAST of EWM23835.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585105100\|gb\|EWM23835.1\|	0.000e+0	100.00	calmodulin like myosin light chain [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna6856	rna6856	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications