rna6853, rna6853 (mRNA) Nannochloropsis gaditana

Overview
Namerna6853
Unique Namerna6853
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1137
Alignment locationCM002469.1:642721..643701 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100273g1.3660.mrna
Orig protein idgnl|cribi|Naga_100273g1.3660
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:642721..643701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100273g1gene6624Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6853rna6853-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23844.1cds6837Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6853 ID=rna6853|Name=rna6853|organism=Nannochloropsis gaditana|type=mRNA|length=1137bp
ATGCACAAGCGTGTGTTTTTGTTTTCCCGGGACGATGGCCTTCTTGTTTT
TATCCTGAAGTTGAGAGCCAGGGCAAGCAATAATTGCCTTCCACGCAGCA
CAAGAAGAACGAGGCGACACGCTCCTTTCTGTTTTTTCCCTCCTTTAAGG
TGGGCACGGGGTTGGACTCCTTCCTCCCTGTCCGCTGTCACTGCCGCCCT
CTCTTCTCCTTCCTCGTCTTTTTATCCCTCGCCCCTCCGTGTCCATTGCC
AGGCATATCATGCATCGCAGTCGGCGAATGAACTGTCGAATATTCTCCCT
ATCTCGTCTAGTGCCGTCCCGGAGAGGAAGCTGGACCAGGCCCTGGTTCC
GTGGCTGGAAAAACATACCTCTCTCCCTTCCTTTTCTTCAGCTACGCCTC
TGTTGCCTCCTACCCTCCTTGACGTCCGTCCTTCATCCATACCCAATGCC
GGGCGTGGGCTTTGGCTCAAACCCTATCAGACTGTTGCCAAGGGCGACAT
CCTCACGCTATATCCCGGACTCATTTATGAACTGCCTCACGACCTGGCGG
CGCTGATGCCGTCCGAAGATGCTTTTGCCTTTGCCCCACCGGACTTCATG
ATAGGAAATGCCTTCCTTTTGCGCGTGTCCGTGTCGTCTCGGGATTTTCT
CTGCGACGGGCGGCCGTTTGGGTTGTCGGCCCATATGTTTCGCGCAATTT
CTCGACGGCAACACGAGCGGCTTGGCCTCCAGGTCAACGACGCTTGGTTG
GAGGGGGAGGGGGAAGGCGGGAAGGAAAACGGGAAAGGGACAGCAAAGGA
AAAAGGCGCCGAGGGCGGAGGCAAGAGGTCGAGCCTGGCGTGGGGTCATC
TCATCAACGATCCCCAGGGGAGCGGGGGGCGCCCCAACGTGGCGTTTCGG
ACGATCCGTGTCACTGTTGCCGCGTCGGCGGCGCCGGCGGCCCCGGCGTC
CTCCTTCCCTCCCTCCTTCCCTCCCTCCCTCCTGCCCTCCCTCCCGACCC
TGTCCGCCTCGGGGAACAATGCGAGGGAACGCGTGGTGATCGCGGTCGTG
GCCGTGGAAGCGATGGAGGGAGGGGCGGAGGGGAAGGAGCTTTTCGTCCA
GTATTCTCAGGAACCGACGCATTTGGGCTACATTTAG
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protein sequence of rna6853

>rna6853-protein ID=rna6853-protein|Name=rna6853|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MDLSLAGRRPLSSLSTNGQDVEGQQQQQRAAQKLAALEKEVSEKVDKDFF
VEEVLFRPLVHVIDVLGSKDGAVSNVSMEALQEQCALVNRAMESFVEENS
SYLNGNVEAMGTILRKFQDTCSDVRTLRGQVGNGSRERRRVQALGGFHVY
IDIYVCVCYVYIYMFV
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mRNA from alignment at CM002469.1:642721..643701+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6853 ID=rna6853|Name=rna6853|organism=Nannochloropsis gaditana|type=mRNA|length=981bp|location=Sequence derived from alignment at CM002469.1:642721..643701+ (Nannochloropsis gaditana)
GAGTAGGAAAAATTGGTCAGTGGCCCCCGTCAACCCCGCGAGACGCGGAC
ACCACGCTACCCAAAGTAAACAAGCGAAGGGATTGCAATATTTGAAGCGG
CTTTCCTCTGCGTCCGAgtgtttctttttcctgccGGGTGCGTGGATGGA
TCTCAGTCTTGCGGGGCGGagacctctctcctctctgtcGACCAATGGCC
AAGACGTTGAGggacaacagcagcaacaacgcGCCGCCCAGAAGCTAGCG
gcgttggagaaggaagttTCGGAGAAGGTTGATAAAGATTTCTTCGTCGA
AGAGGTTCTTTTCAGGTAAGTAGTAGTAGTGGAGGACTGCCTTTCGGAGT
CGAAAGGCAAACAGCAGGAAACCATGGTGGGGGCAATCTGGCAGCGCACA
CCCATAGCTTGCTGGACCCCTACCCACCACGTTTTCAGGCCGCTCGTCCA
CGTGATTGACGTGCTCGGCTCCAAGGACGGAGCTGTGAGCAATGTCAGCA
TGGAAGCTTTGCAAGGTACGCGTTTCATTGCCTCCCCACATGCCGTGTAA
GCACAACATCGATGTCCGCCTGGTCCTGTAAGATAATAACACACGGGCTT
CCCTGTGATGTTCCTCTCCTGGAGCGCGTGTGTCTCGCCTCAGAAGGCCC
TTGCCAGTCTcgcgtccccctccttagtcctctccatcctctccatcctc
ccccccccccctccttcgccctcacAGAACAATGCGCCCTCGTGAACCGA
GCTATGGAGAGCTTCGTAGAGGAGAATTCCTCCTACTTGAACGGCAACGT
GGAAGCGATGGGGACAATTCTCAGAAAGTTCCAGGACACCTGCTCGGACG
TGAGGACGCTCCGGGGGCAGGTAGGAAACGGGTCAAGGGAACGGCGAAGA
GTACAGGCGCTTGGCGGCTTCCACGTATATATAGatatatatgtgtgtgt
gtgttaCGTATATATATACATGTTTGTGTGA
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Coding sequence (CDS) from alignment at CM002469.1:642721..643701+

>rna6853 ID=rna6853|Name=rna6853|organism=Nannochloropsis gaditana|type=CDS|length=1503bp|location=Sequence derived from alignment at CM002469.1:642721..643701+ (Nannochloropsis gaditana)
ATGGATCTCAGTCTTGCGGGGCGGagacctctctcctctctgtcGACCAA
TGGCCAAGACGTTGAGggacaacagcagcaacaacgcGCCGCCCAGAAGC
TAGCGgcgttggagaaggaagttTCGGAGAAGGTTGATAAAGATTTCTTC
GTCGAAGAGGTTCTTTTCAGGCCGCTCGTCCACGTGATTGACGTGCTCGG
CTCCAAGGACGGAGCTGTGAGCAATGTCAGCATGGAAGCTTTGCAAGAAC
AATGCGCCCTCGTGAACCGAGCTATGGAGAGCTTCGTAGAGGAGAATTCC
TCCTACTTGAACGGCAACGTGGAAGCGATGGGGACAATTCTCAGAAAGTT
CCAGGACACCTGCTCGGACGTGAGGACGCTCCGGGGGCAGGTAGGAAACG
GGTCAAGGGAACGGCGAAGAGTACAGGCGCTTGGCGGCTTCCACGTATAT
ATAGatatatatgtgtgtgtgtgttaCGTATATATATACATGTTTGTGTG
AATGGATCTCAGTCTTGCGGGGCGGagacctctctcctctctgtcGACCA
ATGGCCAAGACGTTGAGggacaacagcagcaacaacgcGCCGCCCAGAAG
CTAGCGgcgttggagaaggaagttTCGGAGAAGGTTGATAAAGATTTCTT
CGTCGAAGAGGTTCTTTTCAGGCCGCTCGTCCACGTGATTGACGTGCTCG
GCTCCAAGGACGGAGCTGTGAGCAATGTCAGCATGGAAGCTTTGCAAGAA
CAATGCGCCCTCGTGAACCGAGCTATGGAGAGCTTCGTAGAGGAGAATTC
CTCCTACTTGAACGGCAACGTGGAAGCGATGGGGACAATTCTCAGAAAGT
TCCAGGACACCTGCTCGGACGTGAGGACGCTCCGGGGGCAGGTAGGAAAC
GGGTCAAGGGAACGGCGAAGAGTACAGGCGCTTGGCGGCTTCCACGTATA
TATAGatatatatgtgtgtgtgtgttaCGTATATATATACATGTTTGTGT
GAATGGATCTCAGTCTTGCGGGGCGGagacctctctcctctctgtcGACC
AATGGCCAAGACGTTGAGggacaacagcagcaacaacgcGCCGCCCAGAA
GCTAGCGgcgttggagaaggaagttTCGGAGAAGGTTGATAAAGATTTCT
TCGTCGAAGAGGTTCTTTTCAGGCCGCTCGTCCACGTGATTGACGTGCTC
GGCTCCAAGGACGGAGCTGTGAGCAATGTCAGCATGGAAGCTTTGCAAGA
ACAATGCGCCCTCGTGAACCGAGCTATGGAGAGCTTCGTAGAGGAGAATT
CCTCCTACTTGAACGGCAACGTGGAAGCGATGGGGACAATTCTCAGAAAG
TTCCAGGACACCTGCTCGGACGTGAGGACGCTCCGGGGGCAGGTAGGAAA
CGGGTCAAGGGAACGGCGAAGAGTACAGGCGCTTGGCGGCTTCCACGTAT
ATATAGatatatatgtgtgtgtgtgttaCGTATATATATACATGTTTGTG
TGA
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Synonyms
Publications