EWM23844.1, cds6837 (CDS) Nannochloropsis gaditana

Overview
NameEWM23844.1
Unique Namecds6837
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:642866..643035 +
Alignment locationCM002469.1:643159..643235 +
Alignment locationCM002469.1:643448..643701 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23844.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100273g1.3660.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:642866..643035 +
CM002469.1supercontigCM002469.1:643159..643235 +
CM002469.1supercontigCM002469.1:643448..643701 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM23844.1 vs. NCBI_GenBank
Match: gi|585105112|gb|EWM23844.1| (hypothetical protein Naga_100273g1 [Nannochloropsis gaditana])

HSP 1 Score: 340.117 bits (871), Expect = 2.972e-118
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 
Query:    1 MDLSLAGRRPLSSLSTNGQDVEGQQQQQRAAQKLAALEKEVSEKVDKDFFVEEVLFRPLVHVIDVLGSKDGAVSNVSMEALQEQCALVNRAMESFVEENSSYLNGNVEAMGTILRKFQDTCSDVRTLRGQVGNGSRERRRVQALGGFHVYIDIYVCVCYVYIYMFV 166
            MDLSLAGRRPLSSLSTNGQDVEGQQQQQRAAQKLAALEKEVSEKVDKDFFVEEVLFRPLVHVIDVLGSKDGAVSNVSMEALQEQCALVNRAMESFVEENSSYLNGNVEAMGTILRKFQDTCSDVRTLRGQVGNGSRERRRVQALGGFHVYIDIYVCVCYVYIYMFV
Sbjct:    1 MDLSLAGRRPLSSLSTNGQDVEGQQQQQRAAQKLAALEKEVSEKVDKDFFVEEVLFRPLVHVIDVLGSKDGAVSNVSMEALQEQCALVNRAMESFVEENSSYLNGNVEAMGTILRKFQDTCSDVRTLRGQVGNGSRERRRVQALGGFHVYIDIYVCVCYVYIYMFV 166
[Close]
BLAST of EWM23844.1 vs. NCBI_GenBank
Match: gi|553187410|ref|XP_005854606.1| (hypothetical protein NGA_0210300, partial [Nannochloropsis gaditana CCMP526] >gi|422294458|gb|EKU21758.1| hypothetical protein NGA_0210300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 263.848 bits (673), Expect = 1.170e-88
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 
Query:    1 MDLSLAGRRPLSSLSTNGQDVEGQQQQQRAAQKLAALEKEVSEKVDKDFFVEEVLFRPLVHVIDVLGSKDGAVSNVSMEALQEQCALVNRAMESFVEENSSYLNGNVEAMGTILRKFQDTCSDVRTLRGQ 130
            MDLSLAGRRPLSSLSTNGQDVEGQQQQQRAAQKLAALEKEVSEKVDKDFFVEEVLFRPLVHVIDVLGSKDGAVSNVSMEALQEQCALVNRAMESFVEENSSYLNGNVEAMGTILRKFQDTCSDVRTLRGQ
Sbjct:    1 MDLSLAGRRPLSSLSTNGQDVEGQQQQQRAAQKLAALEKEVSEKVDKDFFVEEVLFRPLVHVIDVLGSKDGAVSNVSMEALQEQCALVNRAMESFVEENSSYLNGNVEAMGTILRKFQDTCSDVRTLRGQ 130
The following BLAST results are available for this feature:
BLAST of EWM23844.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105112|gb|EWM23844.1|2.972e-118100.00hypothetical protein Naga_100273g1 [Nannochloropsi... [more]
gi|553187410|ref|XP_005854606.1|1.170e-88100.00hypothetical protein NGA_0210300, partial [Nannoch... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6853rna6853Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications