rna6851, rna6851 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6851
Unique Name	rna6851
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1702
Alignment location	CM002469.1:638761..640871 +

Link to JBrowse

Properties


Property Name	Value
Product	glutathione peroxidase
Orig transcript id	gnl\|cribi\|Naga_100273g3.3658.mrna
Orig protein id	gnl\|cribi\|Naga_100273g3.3658
Gene	GPX
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:638761..640871 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
GPX	gene6622	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6851	rna6851-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23842.1	cds6835	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:638761..640871+
coding sequence from alignment at CM002469.1:638761..640871+

mRNA sequence

>rna6851 ID=rna6851|Name=rna6851|organism=Nannochloropsis gaditana|type=mRNA|length=1702bp
GGCTAAGGTGCAACGGTCTCGAATGAAGGACTCGCAATCAAGGTTTTAAA
ACTATCACTCATAGCCACAGGACGCACTCCTGCTGTCGTCTAATCGCGAG
ATTGATCGTGATTTTTCGGGTTGGAAACCGGCTTCTATTTGCAGCAAGCT
TAAGGACATGGGCAGCGTCCTCCGCCTTTCTCTCCTAGCATTGTATTTTC
CCTCACTCCTAAGCATAGTCTCATGCTTTTATACGCAGTTTTCGTCCACT
AGACCACGTCGCACATTCCAACGAGCCGCCTCCTCGTCGTCTATGTCCTC
CGCCGCCTCTCCCTCCTCTCTTGCTCATTCCTCACTCTCGACCTCCTCTT
CCTCATCCATGGATGCTTCGACTCTTTGCCCTCCTTCTCCTGATAGCGAC
ACAAATAAATGGGATAGTAGCAAAACCAGAAGAGATGTCCTGGCCCCCAT
GACCTTATCTCTTCTCCTCCTCAGCAGCAGCACCCTCTCCCATCCCGTGT
CAACCTTGGCCTCCTCCCCTCCCTCCCCCTCCTCCTCTCCCGCCCTTGAT
CCCTCCTTCCTCCCTTCCAACGCTCGGGTCACAGACAAAGTTTTTTTCGA
CATATCCATTGCCGGTGTCCCGGCCGGCACCCTCTCCATGGGTGTCTTTG
GGGACCAGGCGCCCGTGACGGTGGGAAATTTTTTGAAAGTTTTGAACGGC
CAGGGACAGAGCGCTTCATACATGTACTCGAGCGTGTGGCGCGTCCTTGC
GGGGTCTTGCATTGATATGGGTCGCGTCGGGGGAGGGGGAGGGAAACAAC
TCAAGAGAGAAATCAACGAAAGCGGGGTCATGCGGATCAAGACGGAAAAC
GCCGCGGATTGGACGAGAAACACCGAAGTCAATGGCTTGAAACATGCCGA
GCCCTTTCTGTTGACCATGGTCCGAGGAGGAGGAACCTTTGAGTTCAGCG
TGACCACCGCCCCGGTGCCCGCATTGGATAGAGACCACGTGGTGTTTGGG
CGACTGCTGATGAAACCGGAAGAAAAAGAGCGGGAAAGCAACCAGGCGGT
AGTGGACAAGATCGGGAGAGTTAAGGTGAGCACCGACGACATTGTAGCAT
CCAAGACCTTGTTTGCCGCCGCGGGAAAAGGTTTTGACCCTCGCGCTAAA
ATTATATATTTGAATAAGCCGCTGCAAAAGATTGTGGTCACGGCCGTGGG
GATGCTTTGACAGGCCGAACAAGGGGAGGAAGAGGATGATGGAGGCGTCG
GGGCGTGAATTAGAGGATGCAGAGACGAAGGACGGGAAGCTGGGAGGTAA
AGGTGACTTTCGATTTCATTGGAGAGAGGGCGCTTTCACAGGATGAGGGT
TAAAGTAATGGAATAGGGTCTGAATAGGGTCATGGAAGCGAAAGCACAAG
GAGGGGTAGAAGGAGGAGGGAAGGAAGGCACATGCGTAATGGGTGGCGTA
TAAACATAGTTCTTGATTCATGAATTAGAGCATAGAAGTAAAAGCACAAT
AAGGGAGGAGGGAAATAAGGCACGTGCGTGATGGGTCGCGTATACACAAA
GTTCTTGATTCGAACATTACCGTTCTAAACAAGGCCGCGAGCATCTCACC
GACGACCTCACACCGTGCCACTACGGACGCCAACACCCTATTGCAAAGCT
GGCCCACCAAGAGCTACAAGAAGAACTTCTCGCGTTTCCCCTGTCCACGT
CC

protein sequence of rna6851

>rna6851-protein ID=rna6851-protein|Name=rna6851|organism=Nannochloropsis gaditana|type=polypeptide|length=344bp
MRQQLHRPAPRRSSRLLLLLALVLGASYSNAFVSSPLLKKLAPLAHKQRC
RMSAPQEEGSSSTDLHTAQSSLSLNRADLLKRTLRAASSFSLVWLTGQRE
ADAGEEGAPDASVEVAKESAQPAPVSPPATAPGPLKTAYDYAVPYDGVRV
PLGNFRGKAVVVCNAKTDDPESLAQIPGLTYLTGKYSKKGLKVWVFTTEQ
GTFETDEDRVIRIKYYQQYGFGQYPNSLVFDKIDIVGKRADPFYKFLCKT
LRNPNKIARITLNFEKFLLDANGRPVRRYPRRYTAYDMEEDVKAVLAGEP
LPPPSPKLIKAWRDAYVEAERSEYAFKKGLNYYEPLGEDQRSLP

mRNA from alignment at CM002469.1:638761..640871+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6851 ID=rna6851|Name=rna6851|organism=Nannochloropsis gaditana|type=mRNA|length=2111bp|location=Sequence derived from alignment at CM002469.1:638761..640871+ (Nannochloropsis gaditana)
GTGCCCTCCGTCACCGTAACAGACACCGGCAATTGAGGGAGCGCGTGTCg
atttttttggggctcTGCTTGCGGgctcccccctttccgtcaATCATGCG
GCAACAGTTGCACCGTCCTGCCCCAAGACGGTCGTCCCGGCTTCTCCTTT
TGCTTGCTTTGGTACTCGGGGCATCATATTCCAATGCCTttgtctcttct
ccccttttgAAAAAGGTTCGTGACCAGAAAATGGAATGGATTCTTTGAGT
GAGCAACGCAGGACCTGAGAGAGACGCACTTTCgtgtcctctttccattt
tctctTACATCGTTTATTCCTCATGTTATTACCCTGCCTTCCAGCGTTGC
CCACAGAGAAGTGCATTTCATGTGAACTTCCCCTAGCACTCATAAATccg
catttcctcctcccttcccccttcgacGCCGttttcccccgtccttcctc
cctctgtgtGTCAAGAATCCTCTCGACGCTTTTTTCAATCACATGGTTCA
TTCTTAAAACTTACCTTGACTTCATGGcgacctctttcctctttccaccc
cTGGCACTCCTTCTGTCcccacacctcctcccaatcctccctccctttct
cgcaGCTCGCTCCTCTAGCCCACAAACAGAGATGTCGCATGTCTGCGCCG
CAGGAAGAAGGGTCATCAAGCACAGACCTTCACACTGCCCAATCGTCATT
GAGCCTGAATCGTGCCGATCTTCTCAAGCGGACTTTAAgggctgcttcct
ccttctctctggTGTGGCTCACCGGCCAGCGAGAGgcggacgcgggggag
gaaggcgctcCGGACGCCTCCGTGGAGGTGGCTAAGGAAAGTGCACAGCC
TGCTCCCGTCTCGCCTCCAGCAACTGCCCCCGGCCCATTGAAAACTGCCT
ACGATTATGCCGTACCCTACGACGGCGTGCGGGTGCCCCTCGGGAATTTT
CGGGGGAAAGCGGTCGTTGTGTGCAATGCCAAGACCGACGATCCGGAGAG
CTTGGCGCAGATTCCAGGCCTCACGTATTTGACGGGGAAGTACAGGTGAG
AGAGCTTGTGTTGTCGACGCGTCAcacggaggcgggaggggagaaggacg
gtggGGTGTCTGGTGGGggtttgggagggaggagggaatgcgtCCCGGGG
AGAGGATGTAGTGCATGTATCCCTTGGGCTTTTTTTGGGGTCCAAGACGT
CGGCACTGGCTTGTGGATTCGAGGGCCTCCATGTGCCTCTGTTCATCCTC
CTggtttctccctccccccctttccttccctctcccccccgggGGCCGTG
GTCCTCTGTCCCCAGCAAGAAAGGCTTGAAGGTATGGGTGTTCACCACCG
AACAAGGCACCTTCGAAACGGACGAGGACCGAGTAATCCGCATCAAGTAC
TATCAACAGTACGGCTTTGGTCAATACCCTAACAGCTTGGTGTTCGACAA
GATTGACATTGTTGGAAAGCGCGCCGATCCGTTCTACAAATTCTTGTGCA
AAACGTTGCGGAATCCGAACAAGATCGCCCGCATCACTTTGAATTTTGAA
AAATTCCTGTTGGATGCCAACGGTCGCCCCGTCCGCCGTTACCCGCGCCG
TTACACTGCCTACGACATGGAAGAAGATGTGAAAGCCGTGCTGGCGGGGg
agcccctgcccccccccagcccgAAACTGATCAAAGCCTGGCGCGACGCT
TATGTCGAAGCGGAACGGAGCGAGTATGCGTTCAAGAAGGGTCTGAATTA
CTACGAGCCGTTGGGGGAGGACCAACGCAGCCTTCCCTGAGCGGCTGggt
gacgagggagggaaaggggggggggaaggttgAGAGGGGGGCAAGTCCCC
AtggaagcgagagggaggtactcgagagggaaagagaaagtgcTGAAAAT
TAAGCAACACCTTCTTGGCGAAAGAAAGCACTGCAAGAAATCATCATAGA
CGCGAAGGGAAACGTTCATGCTACGGTTGTGATGTCCCGGGTTATTGCAT
ACTGTCCTGGGACAAgactctcctcccgcctttcctccctccctccctcc
ctaaaTGTAGCCCAAATGCGTCGGTTCCTGAGAATACTGGACGAAaagct
ccttcccctcc

Coding sequence (CDS) from alignment at CM002469.1:638761..640871+

>rna6851 ID=rna6851|Name=rna6851|organism=Nannochloropsis gaditana|type=CDS|length=3105bp|location=Sequence derived from alignment at CM002469.1:638761..640871+ (Nannochloropsis gaditana)
ATGCGGCAACAGTTGCACCGTCCTGCCCCAAGACGGTCGTCCCGGCTTCT
CCTTTTGCTTGCTTTGGTACTCGGGGCATCATATTCCAATGCCTttgtct
cttctccccttttgAAAAAGCTCGCTCCTCTAGCCCACAAACAGAGATGT
CGCATGTCTGCGCCGCAGGAAGAAGGGTCATCAAGCACAGACCTTCACAC
TGCCCAATCGTCATTGAGCCTGAATCGTGCCGATCTTCTCAAGCGGACTT
TAAgggctgcttcctccttctctctggTGTGGCTCACCGGCCAGCGAGAG
gcggacgcgggggaggaaggcgctcCGGACGCCTCCGTGGAGGTGGCTAA
GGAAAGTGCACAGCCTGCTCCCGTCTCGCCTCCAGCAACTGCCCCCGGCC
CATTGAAAACTGCCTACGATTATGCCGTACCCTACGACGGCGTGCGGGTG
CCCCTCGGGAATTTTCGGGGGAAAGCGGTCGTTGTGTGCAATGCCAAGAC
CGACGATCCGGAGAGCTTGGCGCAGATTCCAGGCCTCACGTATTTGACGG
GGAAGTACAGCAAGAAAGGCTTGAAGGTATGGGTGTTCACCACCGAACAA
GGCACCTTCGAAACGGACGAGGACCGAGTAATCCGCATCAAGTACTATCA
ACAGTACGGCTTTGGTCAATACCCTAACAGCTTGGTGTTCGACAAGATTG
ACATTGTTGGAAAGCGCGCCGATCCGTTCTACAAATTCTTGTGCAAAACG
TTGCGGAATCCGAACAAGATCGCCCGCATCACTTTGAATTTTGAAAAATT
CCTGTTGGATGCCAACGGTCGCCCCGTCCGCCGTTACCCGCGCCGTTACA
CTGCCTACGACATGGAAGAAGATGTGAAAGCCGTGCTGGCGGGGgagccc
ctgcccccccccagcccgAAACTGATCAAAGCCTGGCGCGACGCTTATGT
CGAAGCGGAACGGAGCGAGTATGCGTTCAAGAAGGGTCTGAATTACTACG
AGCCGTTGGGGGAGGACCAACGCAGCCTTCCCTGAATGCGGCAACAGTTG
CACCGTCCTGCCCCAAGACGGTCGTCCCGGCTTCTCCTTTTGCTTGCTTT
GGTACTCGGGGCATCATATTCCAATGCCTttgtctcttctccccttttgA
AAAAGCTCGCTCCTCTAGCCCACAAACAGAGATGTCGCATGTCTGCGCCG
CAGGAAGAAGGGTCATCAAGCACAGACCTTCACACTGCCCAATCGTCATT
GAGCCTGAATCGTGCCGATCTTCTCAAGCGGACTTTAAgggctgcttcct
ccttctctctggTGTGGCTCACCGGCCAGCGAGAGgcggacgcgggggag
gaaggcgctcCGGACGCCTCCGTGGAGGTGGCTAAGGAAAGTGCACAGCC
TGCTCCCGTCTCGCCTCCAGCAACTGCCCCCGGCCCATTGAAAACTGCCT
ACGATTATGCCGTACCCTACGACGGCGTGCGGGTGCCCCTCGGGAATTTT
CGGGGGAAAGCGGTCGTTGTGTGCAATGCCAAGACCGACGATCCGGAGAG
CTTGGCGCAGATTCCAGGCCTCACGTATTTGACGGGGAAGTACAGCAAGA
AAGGCTTGAAGGTATGGGTGTTCACCACCGAACAAGGCACCTTCGAAACG
GACGAGGACCGAGTAATCCGCATCAAGTACTATCAACAGTACGGCTTTGG
TCAATACCCTAACAGCTTGGTGTTCGACAAGATTGACATTGTTGGAAAGC
GCGCCGATCCGTTCTACAAATTCTTGTGCAAAACGTTGCGGAATCCGAAC
AAGATCGCCCGCATCACTTTGAATTTTGAAAAATTCCTGTTGGATGCCAA
CGGTCGCCCCGTCCGCCGTTACCCGCGCCGTTACACTGCCTACGACATGG
AAGAAGATGTGAAAGCCGTGCTGGCGGGGgagcccctgcccccccccagc
ccgAAACTGATCAAAGCCTGGCGCGACGCTTATGTCGAAGCGGAACGGAG
CGAGTATGCGTTCAAGAAGGGTCTGAATTACTACGAGCCGTTGGGGGAGG
ACCAACGCAGCCTTCCCTGAATGCGGCAACAGTTGCACCGTCCTGCCCCA
AGACGGTCGTCCCGGCTTCTCCTTTTGCTTGCTTTGGTACTCGGGGCATC
ATATTCCAATGCCTttgtctcttctccccttttgAAAAAGCTCGCTCCTC
TAGCCCACAAACAGAGATGTCGCATGTCTGCGCCGCAGGAAGAAGGGTCA
TCAAGCACAGACCTTCACACTGCCCAATCGTCATTGAGCCTGAATCGTGC
CGATCTTCTCAAGCGGACTTTAAgggctgcttcctccttctctctggTGT
GGCTCACCGGCCAGCGAGAGgcggacgcgggggaggaaggcgctcCGGAC
GCCTCCGTGGAGGTGGCTAAGGAAAGTGCACAGCCTGCTCCCGTCTCGCC
TCCAGCAACTGCCCCCGGCCCATTGAAAACTGCCTACGATTATGCCGTAC
CCTACGACGGCGTGCGGGTGCCCCTCGGGAATTTTCGGGGGAAAGCGGTC
GTTGTGTGCAATGCCAAGACCGACGATCCGGAGAGCTTGGCGCAGATTCC
AGGCCTCACGTATTTGACGGGGAAGTACAGCAAGAAAGGCTTGAAGGTAT
GGGTGTTCACCACCGAACAAGGCACCTTCGAAACGGACGAGGACCGAGTA
ATCCGCATCAAGTACTATCAACAGTACGGCTTTGGTCAATACCCTAACAG
CTTGGTGTTCGACAAGATTGACATTGTTGGAAAGCGCGCCGATCCGTTCT
ACAAATTCTTGTGCAAAACGTTGCGGAATCCGAACAAGATCGCCCGCATC
ACTTTGAATTTTGAAAAATTCCTGTTGGATGCCAACGGTCGCCCCGTCCG
CCGTTACCCGCGCCGTTACACTGCCTACGACATGGAAGAAGATGTGAAAG
CCGTGCTGGCGGGGgagcccctgcccccccccagcccgAAACTGATCAAA
GCCTGGCGCGACGCTTATGTCGAAGCGGAACGGAGCGAGTATGCGTTCAA
GAAGGGTCTGAATTACTACGAGCCGTTGGGGGAGGACCAACGCAGCCTTC
CCTGA

Synonyms

Publications