EWM23842.1, cds6835 (CDS) Nannochloropsis gaditana

Overview
NameEWM23842.1
Unique Namecds6835
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:638856..638975 +
Alignment locationCM002469.1:639366..639805 +
Alignment locationCM002469.1:640076..640550 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23842.1
Productglutathione peroxidase
Orig transcript idgnl|cribi|Naga_100273g3.3658.mrna
GeneGPX
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:638856..638975 +
CM002469.1supercontigCM002469.1:639366..639805 +
CM002469.1supercontigCM002469.1:640076..640550 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006950response to stress
GO:0042221response to chemical
GO:0008152metabolic process
GO:0055114oxidation-reduction process
GO:0006979response to oxidative stress
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004602glutathione peroxidase activity
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR000889Glutathione_peroxidase
Homology
BLAST of EWM23842.1 vs. NCBI_GenBank
Match: gi|553187407|ref|XP_005854605.1| (glutathione peroxidase [Nannochloropsis gaditana CCMP526] >gi|422294457|gb|EKU21757.1| glutathione peroxidase [Nannochloropsis gaditana CCMP526] >gi|585105110|gb|EWM23842.1| glutathione peroxidase [Nannochloropsis gaditana])

HSP 1 Score: 702.975 bits (1813), Expect = 0.000e+0
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0
Query:    1 MRQQLHRPAPRRSSRLLLLLALVLGASYSNAFVSSPLLKKLAPLAHKQRCRMSAPQEEGSSSTDLHTAQSSLSLNRADLLKRTLRAASSFSLVWLTGQREADAGEEGAPDASVEVAKESAQPAPVSPPATAPGPLKTAYDYAVPYDGVRVPLGNFRGKAVVVCNAKTDDPESLAQIPGLTYLTGKYSKKGLKVWVFTTEQGTFETDEDRVIRIKYYQQYGFGQYPNSLVFDKIDIVGKRADPFYKFLCKTLRNPNKIARITLNFEKFLLDANGRPVRRYPRRYTAYDMEEDVKAVLAGEPLPPPSPKLIKAWRDAYVEAERSEYAFKKGLNYYEPLGEDQRSLP 344
            MRQQLHRPAPRRSSRLLLLLALVLGASYSNAFVSSPLLKKLAPLAHKQRCRMSAPQEEGSSSTDLHTAQSSLSLNRADLLKRTLRAASSFSLVWLTGQREADAGEEGAPDASVEVAKESAQPAPVSPPATAPGPLKTAYDYAVPYDGVRVPLGNFRGKAVVVCNAKTDDPESLAQIPGLTYLTGKYSKKGLKVWVFTTEQGTFETDEDRVIRIKYYQQYGFGQYPNSLVFDKIDIVGKRADPFYKFLCKTLRNPNKIARITLNFEKFLLDANGRPVRRYPRRYTAYDMEEDVKAVLAGEPLPPPSPKLIKAWRDAYVEAERSEYAFKKGLNYYEPLGEDQRSLP
Sbjct:    1 MRQQLHRPAPRRSSRLLLLLALVLGASYSNAFVSSPLLKKLAPLAHKQRCRMSAPQEEGSSSTDLHTAQSSLSLNRADLLKRTLRAASSFSLVWLTGQREADAGEEGAPDASVEVAKESAQPAPVSPPATAPGPLKTAYDYAVPYDGVRVPLGNFRGKAVVVCNAKTDDPESLAQIPGLTYLTGKYSKKGLKVWVFTTEQGTFETDEDRVIRIKYYQQYGFGQYPNSLVFDKIDIVGKRADPFYKFLCKTLRNPNKIARITLNFEKFLLDANGRPVRRYPRRYTAYDMEEDVKAVLAGEPLPPPSPKLIKAWRDAYVEAERSEYAFKKGLNYYEPLGEDQRSLP 344          
BLAST of EWM23842.1 vs. NCBI_GenBank
Match: gi|298713045|emb|CBJ48820.1| (Glutathione peroxidase [Ectocarpus siliculosus])

HSP 1 Score: 249.21 bits (635), Expect = 9.041e-78
Identity = 120/194 (61.86%), Postives = 145/194 (74.74%), Query Frame = 0
Query:  141 YAVPYDGVRVPLGNFRG-KAVVVCNAKTDDPESLAQIPGLTYLTGKYSKKGLKVWVFTTEQGTFETDEDRVIRIKYYQQYGFGQYPNSLVFDKIDIVGKRADPFYKFLCKTLRNPNKIARITLNFEKFLLDANGRPVRRYPRRYTAYDMEEDVKAVLAGEPLPPPSPKLIKAWRDAYVEAERSEYAFKKGLNYY 333
            + VPY G  VPL  F G +A +V N K DDPE+L Q+PG+T L  +YSK GL V +F T+QGTFE DEDRVIRIK+YQ YGFGQYP ++VFDKIDIVG    PFY++LC+ L+NPN IARITLN+EKFLLD +G+ VRRYPR+  A D E DVKAV+AG+PLP  +     +W  A  EA +SEYAFK GLNYY
Sbjct:   95 FEVPYTGKSVPLNKFLGSRATLVVNGKLDDPEALHQMPGITKLASEYSKDGLNVLLFPTDQGTFEADEDRVIRIKFYQFYGFGQYPKAVVFDKIDIVGNTIHPFYRYLCRALKNPNGIARITLNYEKFLLDQDGKVVRRYPRKLEAADFEADVKAVIAGDPLPAENRDYKLSWLKADQEATKSEYAFKLGLNYY 288          
BLAST of EWM23842.1 vs. NCBI_GenBank
Match: gi|551661343|ref|XP_005833438.1| (hypothetical protein GUITHDRAFT_152358 [Guillardia theta CCMP2712] >gi|428177579|gb|EKX46458.1| hypothetical protein GUITHDRAFT_152358 [Guillardia theta CCMP2712])

HSP 1 Score: 190.66 bits (483), Expect = 3.081e-55
Identity = 96/198 (48.48%), Postives = 130/198 (65.66%), Query Frame = 0
Query:  140 DYAVPYDGVRVPLGNFRG-KAVVVCNAKTDDPESLAQIPGLTYLTGKYSKKGLKVWVFTTEQGTFETDEDRVIRIKYYQQYGFGQYPNS--LVFDKIDIVGKRADPFYKFLCKTLRNPNKIARITLNFEKFLLDANGRPVRRYPRRYTAYDMEEDVKAVLAGEPLPPPSPKLIKAWRDAYVEAERSEYAFKKGLNYYE 334
            D  +P +G +  L   +G KA +V N K DDPE++ QIP L  L  +Y+ +GL    F T+QG +E D+   +RIK  QQYG         +V DK DIVGK   P Y+++   L NPN I RITLN+EKFLLDA+G+ +RRYPR ++A  ME+DVKAVLAG+PLPP  P+ + AW++A  EA RS Y+F+K  N+Y+
Sbjct:   30 DIPIPVNGKQKTLSKLKGSKATIVMNIKLDDPETVTQIPALKTLVLQYADQGLNAICFPTDQGDYEPDDSATVRIKVAQQYGMKSSLKGPIIVTDKTDIVGKFTHPLYRYMTTNLPNPNNITRITLNYEKFLLDADGQVLRRYPRLWSAERMEKDVKAVLAGQPLPPVDPQWLFAWKEADKEATRSIYSFRKHYNFYD 227          
BLAST of EWM23842.1 vs. NCBI_GenBank
Match: gi|551561960|ref|XP_005767789.1| (glutathione peroxidase [Emiliania huxleyi CCMP1516] >gi|485618335|gb|EOD15360.1| glutathione peroxidase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 184.882 bits (468), Expect = 8.872e-53
Identity = 97/192 (50.52%), Postives = 131/192 (68.23%), Query Frame = 0
Query:  141 YAVPYDGVRVPLGNFRGKAVVVCNAKTDDPESLAQIPGLTYLTGKYSKKGLKVWVFTTEQGTFETDEDRVIRIKYYQQYGFGQYPNSLVFDKIDIVGKRADPFYKFLCKTLRNPNKIARITLNFEKFLLDANGRPVRRYPRRYTAYDMEEDVKAVLAGEPLPPPSPKLIKAWRDAYVEAERSEYAFKKGLNY 332
            + VP+ G   P+  F G+A +V N K DDP +L Q+PGL  L  +Y+ +GL V  F T+QG FE D+   +R+K+   Y FGQYP ++VFDK D++G  A PFY +L +++ NP  + R+  ++EKFLL  +G P+RRYPR+Y   +ME D++AVLAG PLPPPSP L KAW DA  EA +SEYAFK G NY
Sbjct:   90 FDVPFRGEPTPIKPFLGRASIVVNVKFDDPATLDQLPGLQALYARYNAEGLHVLAFPTDQGWFEADDSNTLRLKFKSVYDFGQYPAAVVFDKADLLGGNALPFYSWLTRSMSNPWGVQRLVFDYEKFLLAPDGTPLRRYPRKYPPQNMEADIEAVLAGRPLPPPSPALAKAWEDAKREAVKSEYAFKPGYNY 281          
BLAST of EWM23842.1 vs. NCBI_GenBank
Match: gi|922857606|gb|KOO25831.1| (glutathione peroxidase, partial [Chrysochromulina sp. CCMP291])

HSP 1 Score: 187.193 bits (474), Expect = 2.578e-51
Identity = 85/171 (49.71%), Postives = 117/171 (68.42%), Query Frame = 0
Query:  161 VVCNAKTDDPESLAQIPGLTYLTGKYSKKGLKVWVFTTEQGTFETDEDRVIRIKYYQQYGFGQYPNSLVFDKIDIVGKRADPFYKFLCKTLRNPNKIARITLNFEKFLLDANGRPVRRYPRRYTAYDMEEDVKAVLAGEPLPPPSPKLIKAWRDAYVEAERSEYAFKKGLN 331
            ++ N K DDPE+L Q+P +  +  +YS++GL V  F T+QG FE D+   +R+KY   YGFGQYP ++VFDK D++G  A P Y ++  TL NP  + R+  N+EKFL+D  G+P RRYPR++    M+ DV+A+L G+PLPPPS  L KAW DA  EA +SEY+FK GL 
Sbjct:   59 LLVNVKFDDPETLDQMPAIGDMVSRYSERGLHVLAFPTDQGWFEADDSNTLRLKYKSVYGFGQYPTAVVFDKTDLLGGNALPLYTWMTTTLSNPWGVNRLVFNYEKFLVDDRGQPRRRYPRKFPIQLMDADVQALLNGQPLPPPSASLEKAWEDAKREAVKSEYSFKPGLG 229          
BLAST of EWM23842.1 vs. NCBI_GenBank
Match: gi|873228613|emb|CEM15555.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 169.088 bits (427), Expect = 2.930e-46
Identity = 87/195 (44.62%), Postives = 122/195 (62.56%), Query Frame = 0
Query:  143 VPYDGVRVPLGNFRGK-AVVVCNAKTDDPESLAQIPGLTYLTGKYSKKGLKVWVFTTEQGTFETDEDRVIRIKYYQQYGFGQYPNSLVFDKIDIVGKRADPFYKFLCKTLRNP---NKIARITLNFEKFLLDANGRPVRRYPRRYTAYDMEEDVKAVLAGEPLPPPSPKLIKAWRDAYVEAERSEYAFKKGLNYY 333
            +P     +P+  F G+ A +V N K DDPES  QI  L YL  KY K+GL V +F T QG  E D D  +RI+ YQ +GFGQYP ++ FDK+D++G +A P Y +L + LRNP        I+LN+EKFLLD +G PVRRYPR++   ++E D++A+L G  L  PS +   AW  A  E ++  YA+++  NY+
Sbjct:  129 IPLRKKSIPIEKFLGRRATLVVNIKLDDPES-RQIGELKYLVDKYWKQGLTVMMFPTLQGWAEPDTDDTLRIRVYQTFGFGQYPQAVCFDKVDVIGPQAHPLYTYLGRQLRNPIAGKSWENISLNYEKFLLDGDGVPVRRYPRQWDPLEIEYDLRALLDGRQLGAPSKEFQLAWLKAERERKKDTYAYRENYNYF 322          
BLAST of EWM23842.1 vs. NCBI_GenBank
Match: gi|1210529258|dbj|GAX12100.1| (hypothetical protein FisN_15Lh208 [Fistulifera solaris])

HSP 1 Score: 167.933 bits (424), Expect = 8.296e-46
Identity = 119/315 (37.78%), Postives = 169/315 (53.65%), Query Frame = 0
Query:   41 LAPLAHKQRCRMSAPQEEGSSSTDLHTAQSSLSLNRADLLKRTLRAASSFSLVWLTGQREADAGEEG-------APDASVEVAKESAQPAPVSPPATAPGPLKTAYDYAVPYDGVRVPL-----------GNFRGKAVVVCNAKTDDPESLAQIPGLTYLTGKYSK--KGLKVWVFTTEQGTFETDEDRVIRIKYYQQYGFGQYPNSLVFDKIDIVGKRADPFYKFLCKTLRNPNKIARITLNFEKFLLDA-NGRPVRRYPRRYTAYDMEEDVKAVLAGEPLPPPSPKLIKAWRDAYVEAERSEYAFKKGLNYYE 334
            LA LA   + R  A +   S+ +  HT Q SLS N +   +R +         W      A A EE        A   S ++ KE+AQ A      T     KTAYD+++P +G   P            G+ R KA++V N K DDP +   IP L  L  KY +    L+V V  ++QG +E D  ++IR+K   +YG+G  P+++V DK++ +G  A PF+++L  + R P  + R+  NFEKFLLD   G P+RRYPR+Y   +ME+D+ AVL G+PLPPP     + WR A  EA+R  Y F+KGLNYY+
Sbjct:    9 LAVLALATKVR--AFRTAVSTRSQRHTVQLSLSQNGSSEQRRAILRQLLTVGGWTVLTPSALADEESFAAISARANQISQDMNKEAAQVA-----VTQRSNDKTAYDFSLPMEGKNTPFKDIIGQSITESGDARVKAILVVNLKQDDPIARKTIPELIALATKYGRDTSALRVIVSPSDQGYYEPDTSQLIRLKLASEYGYGINPSTIVTDKVNFLGTGAHPFWRWLQASCRTPAGLGRLEGNFEKFLLDGRTGLPLRRYPRKYKPLNMEDDIAAVLNGKPLPPPRANWQEEWRAAAAEADRDTYRFQKGLNYYD 316          
BLAST of EWM23842.1 vs. NCBI_GenBank
Match: gi|1072226829|gb|OEU11570.1| (hypothetical protein FRACYDRAFT_192183 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 164.466 bits (415), Expect = 6.921e-45
Identity = 83/213 (38.97%), Postives = 125/213 (58.69%), Query Frame = 0
Query:  136 KTAYDYAVPYDGVRVPL------------GNFRGKAVVVCNAKTDDPESLAQIPGLTYLTGKYSKKG-LKVWVFTTEQGTFETDEDRVIRIKYYQQYGFGQYPNSLVFDKIDIVGKRADPFYKFLCKTLRNPNKIARITLNFEKFLLDA-NGRPVRRYPRRYTAYDMEEDVKAVLAGEPLPPPSPKLIKAWRDAYVEAERSEYAFKKGLNYYE 334
            +TAYD+ +P  G  +P             G  + K ++V N K DDP +   IP +  L  KY + G   V +  T+QG +E D  ++IR+K   +YG+G  P +++ DK++++GK A PF+++L    R P  + R+  NFEKFL+D   G P+RRYPR+Y    ++ D++A++AG PLPP      + WR A VEAE   Y F+KGLNYY+
Sbjct:   72 RTAYDFEIPISGNSIPFKDIIHQEIDPETGFSKCKCILVSNMKEDDPIARKDIPEMISLASKYGRDGQFAVILSPTDQGYYEPDTSQLIRLKLASEYGYGINPATILTDKVNMLGKTALPFWRWLQSNCRTPAGLGRVEGNFEKFLVDGRTGLPLRRYPRKYKPSAIKNDIEAIIAGRPLPPAGANFREEWRSAAVEAEAGTYRFQKGLNYYD 284          
BLAST of EWM23842.1 vs. NCBI_GenBank
Match: gi|223998094|ref|XP_002288720.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975828|gb|EED94156.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 163.696 bits (413), Expect = 6.240e-44
Identity = 83/214 (38.79%), Postives = 123/214 (57.48%), Query Frame = 0
Query:  136 KTAYDYAVPYDGVRVPLGNFRG-------------KAVVVCNAKTDDPESLAQIPGLTYLTGKYSKKG-LKVWVFTTEQGTFETDEDRVIRIKYYQQYGFGQYPNSLVFDKIDIVGKRADPFYKFLCKTLRNPNKIARITLNFEKFLLDA-NGRPVRRYPRRYTAYDMEEDVKAVLAGEPLPPPSPKLIKAWRDAYVEAERSEYAFKKGLNYYE 334
            +T YD+ +P  GV   +G   G             KA++V N K DDP +   IP L  L  K+ K G   V V  T+QG +E D   +IR+K   +YG+G  P +++ DK++++G  A PF++++  + R P  + +I  NFEKFL+D   G+ +RRYPR+Y  YD+ +D+ AV+ G PLPP      + WR A  EAE   Y F+KGLNY++
Sbjct:  137 RTIYDFKLPIGGVEKSVGELVGQEFESENGLGEKVKAILVVNIKQDDPIARKNIPELIALASKFGKNGEFAVIVSPTDQGYYEPDTSALIRLKMASEYGYGSTPGTILTDKVNLLGSGALPFWRWIEGSCRTPAGLGKIQANFEKFLVDGRTGKAIRRYPRKYQPYDIADDIAAVVQGRPLPPAQMNFKEEWRTAAKEAEADTYRFQKGLNYFD 350          
BLAST of EWM23842.1 vs. NCBI_GenBank
Match: gi|1210528532|dbj|GAX12729.1| (hypothetical protein FisN_15Hh208 [Fistulifera solaris])

HSP 1 Score: 160.999 bits (406), Expect = 3.013e-43
Identity = 99/241 (41.08%), Postives = 142/241 (58.92%), Query Frame = 0
Query:  108 APDASVEVAKESAQPAPVSPPATAPGPLKTAYDYAVPYDGVRVPL-----------GNFRGKAVVVCNAKTDDPESLAQIPGLTYLTGKYSKK--GLKVWVFTTEQGTFETDEDRVIRIKYYQQYGFGQYPNSLVFDKIDIVGKRADPFYKFLCKTLRNPNKIARITLNFEKFLLDA-NGRPVRRYPRRYTAYDMEEDVKAVLAGEPLPPPSPKLIKAWRDAYVEAERSEYAFKKGLNYYE 334
            A   S ++ KE+AQ A      T     KTAYD+++P +G   P            G+ R KA++V N K DDP +   IP L  L  KY +    L+V V  ++QG +E D  ++IR+K   +YG+G  P+++V DK++ +G  A PF+++L  + R P  + R+  NFEKFLLD   G P+RRYPR+Y   +ME+D+ AVL G+PLPPP     + WR A  EA+R  Y F+KGLNYY+
Sbjct:   79 ANQISQDMNKEAAQVA-----ITQRSNDKTAYDFSLPMEGKNTPFKDIIGQSMTESGDARVKAILVVNLKQDDPIARKTIPELIALATKYGRDTGALRVIVSPSDQGYYEPDTSQLIRLKLASEYGYGINPSTIVTDKVNFLGTGAHPFWRWLQASCRTPAGLGRLEGNFEKFLLDGRTGLPLRRYPRKYKPLNMEDDIAAVLNGKPLPPPRANWQEEWRAAAAEADRDTYRFQKGLNYYD 314          
The following BLAST results are available for this feature:
BLAST of EWM23842.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553187407|ref|XP_005854605.1|0.000e+0100.00glutathione peroxidase [Nannochloropsis gaditana C... [more]
gi|298713045|emb|CBJ48820.1|9.041e-7861.86Glutathione peroxidase [Ectocarpus siliculosus][more]
gi|551661343|ref|XP_005833438.1|3.081e-5548.48hypothetical protein GUITHDRAFT_152358 [Guillardia... [more]
gi|551561960|ref|XP_005767789.1|8.872e-5350.52glutathione peroxidase [Emiliania huxleyi CCMP1516... [more]
gi|922857606|gb|KOO25831.1|2.578e-5149.71glutathione peroxidase, partial [Chrysochromulina ... [more]
gi|873228613|emb|CEM15555.1|2.930e-4644.62unnamed protein product [Vitrella brassicaformis C... [more]
gi|1210529258|dbj|GAX12100.1|8.296e-4637.78hypothetical protein FisN_15Lh208 [Fistulifera sol... [more]
gi|1072226829|gb|OEU11570.1|6.921e-4538.97hypothetical protein FRACYDRAFT_192183 [Fragilario... [more]
gi|223998094|ref|XP_002288720.1|6.240e-4438.79predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210528532|dbj|GAX12729.1|3.013e-4341.08hypothetical protein FisN_15Hh208 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6851rna6851Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications