rna6850, rna6850 (mRNA) Nannochloropsis gaditana

Overview
Namerna6850
Unique Namerna6850
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1422
Alignment locationCM002469.1:636744..638445 -

Link to JBrowse

Properties
Property NameValue
Productpeptidyl-prolyl cis-trans isomerase
Orig transcript idgnl|cribi|Naga_100273g4.3653.mrna
Orig protein idgnl|cribi|Naga_100273g4.3653
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:636744..638445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100273g4gene6621Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23837.1cds6834Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6850rna6850-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6850 ID=rna6850|Name=rna6850|organism=Nannochloropsis gaditana|type=mRNA|length=1422bp
TGCTTTATCTGCCCAGTCTGACACGCCCTTCTGTTCAAACATTGTACATC
CTGTGCTGATTCGTCTTTTACCCGGGGGCAGGAAAATTACGCGGCATCGG
AAGACCATCCACGTACCCCTTGAGGTTGCTGCAGGTGTTTGCGATGGTAG
GGCCTGCCAGAGAGGGTAAAAATGGAAAGGTGGAAGAGGAAGACGACGAA
ATGACGGTGAAGTGTGCGGCGTGCGAACAACGGGAGGATGCTTTGGACAA
TTTGAGCCGGAAACGTTTCAAGATCAATACATCCTGCGGGCATTATTTTT
GCGACACATGCATCCAGCGGGAATTTGCCCGAAAAACCCGTGGTGGCTTT
CGTTGCCCTGCCTGCGCCCGGCTTGGGAAGGACAGGGAGGTGCTGCGTCA
GAGTTTAGAGACCAAGTCCCGGGAGCAATTAATGGTGGAATTGGATACAA
AATGGCGCGAACGAGTCTTGGAGGTGTACGGAAAGAAGGAGGAGGACTTT
GGGGGTAACGAGGATGCCTATAATGACTACATCGAGGAGCGGGAGGACCT
GATCTATACACTGGCTAACCGGCTCTTCATCGATGAGAACGAGGTGCGGG
AGGCAGAAATCCGCCTGGAGAAAGAACGCAAGACCAACGAGGTCGCCGTC
GCTAGATATAGAGCCCGGCGGGAAGAGGATCGACGGCGCTCCGCTCGAGC
TGTGGAAAGCTTTGAACAAGAATGGGCCGAACAAGTCCGACGCGCACACG
AGCAGGAGAAGCGCGAATTGGAAAAATTGCGCGAATTTCGCTTGCAAATT
CAACAGAAGAATTTGGGAGAGCGCGATCAGGTGACGGTCGAACTAGTGGG
CAGAGGCGGGGGAGGGAGGGCGGATGGTGAGGAGGAAGAGGAAGACGAGG
ACGTGGCGCGGGCACTGGGGCGAGAGGGAGGGAGGGGGGGAGGGTTGGAG
GGAGGCGGGGCAGGAATGAGCGGAGCGAGCGCTTTCTGTACCAATCTCCG
CGTCCTGGTCGGGCCCCCCCCCCGGATCGTGGTGGTGGAGGGAGGGCGGG
AGACAGGAGGGGAGGGAGGGAAGGAGGGCATTGCCAAGGCGAGCGGTTGG
CCTTTGTCCCTGCGGTATAAACGGTGCTGGGAGGAGGCCATCGCGTCCTT
GTTCTTGGGTTCGGGGGAAACGAGGGGGAGGTTGGGGCGGACGTTTTATC
GCTAGGTAGGGGAGGAGGGAGGGAGAGGTGTCCGAGGGAGGAGGACGTGG
ACAGGGGAAACGCGAGAAGTTCTTCTTGTAGCTCTTGGTGGGCCAGCTTT
GCAATAGGGTGTTGGCGTCCGTAGTGGCACGGTGTGAGGTCGTCGGTGAG
ATGCTCGCGGCCTTGTTTAGAACGGTAATGTTCGAATCAAGAACTTTGTG
TATACGCGACCCATCACGCACG
back to top

protein sequence of rna6850

>rna6850-protein ID=rna6850-protein|Name=rna6850|organism=Nannochloropsis gaditana|type=polypeptide|length=350bp
MGSVLRLSLLALYFPSLLSIVSCFYTQFSSTRPRRTFQRAASSSSMSSAA
SPSSLAHSSLSTSSSSSMDASTLCPPSPDSDTNKWDSSKTRRDVLAPMTL
SLLLLSSSTLSHPVSTLASSPPSPSSSPALDPSFLPSNARVTDKVFFDIS
IAGVPAGTLSMGVFGDQAPVTVGNFLKVLNGQGQSASYMYSSVWRVLAGS
CIDMGRVGGGGGKQLKREINESGVMRIKTENAADWTRNTEVNGLKHAEPF
LLTMVRGGGTFEFSVTTAPVPALDRDHVVFGRLLMKPEEKERESNQAVVD
KIGRVKVSTDDIVASKTLFAAAGKGFDPRAKIIYLNKPLQKIVVTAVGML
back to top

mRNA from alignment at CM002469.1:636744..638445-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6850 ID=rna6850|Name=rna6850|organism=Nannochloropsis gaditana|type=mRNA|length=1702bp|location=Sequence derived from alignment at CM002469.1:636744..638445- (Nannochloropsis gaditana)
GGCTAAGGTGCAACGGTCTCGAATGAAGGACTCGCAATCAAGGTTTTAAA
ACTATCACTCATAGCCACAGGACGCACTCCTGCTGTCGTCTAATCGCGAG
ATTGATCGTGATTTTTCGGGTTGGAAACCGGCTTCTATTTGCAGCAAGCT
TAAGGACATGGGCAGCGTCCTCCGCCTTTCTCTCCTAGCATTGTATTTTC
CCTCACTCCTAAGCATAGTCTCATGCTTTTATACGCAGTTTTCGTCCACT
AGACCACGTCGCACATTCCAACGAGCCGCCTCCTCGTCGTCTATGTCCTC
CGCCGCCTCTCCCTCCTCTCTTGCTCATTCCTCACTCTCGACCTCCTCTT
CCTCATCCATGGATGCTTCGACTCTTTGCCCTCCTTCTCCTGATAGCGAC
ACAAATAAATGGGATAGTAGCAAAACCAGAAGAGATGTCCTGGCCCCCAT
GACCTTATCTCTTCTCCTCCTCAGCAGCAGCACCCTCTCCCATCCCGTGT
CAACCTTGGCCTCCTCCCCTCCCTCCCCCTCCTCCTCTCCCGCCCTTGAT
CCCTCCTTCCTCCCTTCCAACGCTCGGGTCACAGACAAAGTTTTTTTCGA
CATATCCATTGCCGGTGTCCCGGCCGGCACCCTCTCCATGGGTGTCTTTG
GGGACCAGGCGCCCGTGACGGTGGGAAATTTTTTGAAAGTTTTGAACGGC
CAGGGACAGAGCGCTTCATACATGTACTCGAGCGTGTGGCGCGTCCTTGC
GGGGTCTTGCATTGATATGGGTCGCGTCGGGGGAGGGGGAGGGAAACAAC
TCAAGAGAGAAATCAACGAAAGCGGGGTCATGCGGATCAAGACGGAAAAC
GCCGCGGATTGGACGAGAAACACCGAAGTCAATGGCTTGAAACATGCCGA
GCCCTTTCTGTTGACCATGGTCCGAGGAGGAGGAACCTTTGAGTTCAGCG
TGACCACCGCCCCGGTGCCCGCATTGGATAGAGACCACGTGGTGTTTGGG
CGACTGCTGATGAAACCGGAAGAAAAAGAGCGGGAAAGCAACCAGGCGGT
AGTGGACAAGATCGGGAGAGTTAAGGTGAGCACCGACGACATTGTAGCAT
CCAAGACCTTGTTTGCCGCCGCGGGAAAAGGTTTTGACCCTCGCGCTAAA
ATTATATATTTGAATAAGCCGCTGCAAAAGATTGTGGTCACGGCCGTGGG
GATGCTTTGACAGGCCGAACAAGGGGAGGAAGAGGATGATGGAGGCGTCG
GGGCGTGAATTAGAGGATGCAGAGACGAAGGACGGGAAGCTGGGAGGTAA
AGGTGACTTTCGATTTCATTGGAGAGAGGGCGCTTTCACAGGATGAGGGT
TAAAGTAATGGAATAGGGTCTGAATAGGGTCATGGAAGCGAAAGCACAAG
GAGGGGTAGAAGGAGGAGGGAAGGAAGGCACATGCGTAATGGGTGGCGTA
TAAACATAGTTCTTGATTCATGAATTAGAGCATAGAAGTAAAAGCACAAT
AAGGGAGGAGGGAAATAAGGCACGTGCGTGATGGGTCGCGTATACACAAA
GTTCTTGATTCGAACATTACCGTTCTAAACAAGGCCGCGAGCATCTCACC
GACGACCTCACACCGTGCCACTACGGACGCCAACACCCTATTGCAAAGCT
GGCCCACCAAGAGCTACAAGAAGAACTTCTCGCGTTTCCCCTGTCCACGT
CC
back to top

Coding sequence (CDS) from alignment at CM002469.1:636744..638445-

>rna6850 ID=rna6850|Name=rna6850|organism=Nannochloropsis gaditana|type=CDS|length=1053bp|location=Sequence derived from alignment at CM002469.1:636744..638445- (Nannochloropsis gaditana)
ATGGGCAGCGTCCTCCGCCTTTCTCTCCTAGCATTGTATTTTCCCTCACT
CCTAAGCATAGTCTCATGCTTTTATACGCAGTTTTCGTCCACTAGACCAC
GTCGCACATTCCAACGAGCCGCCTCCTCGTCGTCTATGTCCTCCGCCGCC
TCTCCCTCCTCTCTTGCTCATTCCTCACTCTCGACCTCCTCTTCCTCATC
CATGGATGCTTCGACTCTTTGCCCTCCTTCTCCTGATAGCGACACAAATA
AATGGGATAGTAGCAAAACCAGAAGAGATGTCCTGGCCCCCATGACCTTA
TCTCTTCTCCTCCTCAGCAGCAGCACCCTCTCCCATCCCGTGTCAACCTT
GGCCTCCTCCCCTCCCTCCCCCTCCTCCTCTCCCGCCCTTGATCCCTCCT
TCCTCCCTTCCAACGCTCGGGTCACAGACAAAGTTTTTTTCGACATATCC
ATTGCCGGTGTCCCGGCCGGCACCCTCTCCATGGGTGTCTTTGGGGACCA
GGCGCCCGTGACGGTGGGAAATTTTTTGAAAGTTTTGAACGGCCAGGGAC
AGAGCGCTTCATACATGTACTCGAGCGTGTGGCGCGTCCTTGCGGGGTCT
TGCATTGATATGGGTCGCGTCGGGGGAGGGGGAGGGAAACAACTCAAGAG
AGAAATCAACGAAAGCGGGGTCATGCGGATCAAGACGGAAAACGCCGCGG
ATTGGACGAGAAACACCGAAGTCAATGGCTTGAAACATGCCGAGCCCTTT
CTGTTGACCATGGTCCGAGGAGGAGGAACCTTTGAGTTCAGCGTGACCAC
CGCCCCGGTGCCCGCATTGGATAGAGACCACGTGGTGTTTGGGCGACTGC
TGATGAAACCGGAAGAAAAAGAGCGGGAAAGCAACCAGGCGGTAGTGGAC
AAGATCGGGAGAGTTAAGGTGAGCACCGACGACATTGTAGCATCCAAGAC
CTTGTTTGCCGCCGCGGGAAAAGGTTTTGACCCTCGCGCTAAAATTATAT
ATTTGAATAAGCCGCTGCAAAAGATTGTGGTCACGGCCGTGGGGATGCTT
TGA
back to top
Synonyms
Publications