EWM23837.1, cds6834 (CDS) Nannochloropsis gaditana

Overview
NameEWM23837.1
Unique Namecds6834
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:637236..638288 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23837.1
Productpeptidyl-prolyl cis-trans isomerase
Orig transcript idgnl|cribi|Naga_100273g4.3653.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:637236..638288 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR024936Cyclophilin-type_PPIase
IPR002130Cyclophilin-type_PPIase_dom
IPR029000Cyclophilin-like_dom
Homology
BLAST of EWM23837.1 vs. NCBI_GenBank
Match: gi|585105105|gb|EWM23837.1| (peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 706.827 bits (1823), Expect = 0.000e+0
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0
Query:    1 MGSVLRLSLLALYFPSLLSIVSCFYTQFSSTRPRRTFQRAASSSSMSSAASPSSLAHSSLSTSSSSSMDASTLCPPSPDSDTNKWDSSKTRRDVLAPMTLSLLLLSSSTLSHPVSTLASSPPSPSSSPALDPSFLPSNARVTDKVFFDISIAGVPAGTLSMGVFGDQAPVTVGNFLKVLNGQGQSASYMYSSVWRVLAGSCIDMGRVGGGGGKQLKREINESGVMRIKTENAADWTRNTEVNGLKHAEPFLLTMVRGGGTFEFSVTTAPVPALDRDHVVFGRLLMKPEEKERESNQAVVDKIGRVKVSTDDIVASKTLFAAAGKGFDPRAKIIYLNKPLQKIVVTAVGML 350
            MGSVLRLSLLALYFPSLLSIVSCFYTQFSSTRPRRTFQRAASSSSMSSAASPSSLAHSSLSTSSSSSMDASTLCPPSPDSDTNKWDSSKTRRDVLAPMTLSLLLLSSSTLSHPVSTLASSPPSPSSSPALDPSFLPSNARVTDKVFFDISIAGVPAGTLSMGVFGDQAPVTVGNFLKVLNGQGQSASYMYSSVWRVLAGSCIDMGRVGGGGGKQLKREINESGVMRIKTENAADWTRNTEVNGLKHAEPFLLTMVRGGGTFEFSVTTAPVPALDRDHVVFGRLLMKPEEKERESNQAVVDKIGRVKVSTDDIVASKTLFAAAGKGFDPRAKIIYLNKPLQKIVVTAVGML
Sbjct:    1 MGSVLRLSLLALYFPSLLSIVSCFYTQFSSTRPRRTFQRAASSSSMSSAASPSSLAHSSLSTSSSSSMDASTLCPPSPDSDTNKWDSSKTRRDVLAPMTLSLLLLSSSTLSHPVSTLASSPPSPSSSPALDPSFLPSNARVTDKVFFDISIAGVPAGTLSMGVFGDQAPVTVGNFLKVLNGQGQSASYMYSSVWRVLAGSCIDMGRVGGGGGKQLKREINESGVMRIKTENAADWTRNTEVNGLKHAEPFLLTMVRGGGTFEFSVTTAPVPALDRDHVVFGRLLMKPEEKERESNQAVVDKIGRVKVSTDDIVASKTLFAAAGKGFDPRAKIIYLNKPLQKIVVTAVGML 350          
BLAST of EWM23837.1 vs. NCBI_GenBank
Match: gi|873228959|emb|CEM14588.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 108.612 bits (270), Expect = 3.161e-24
Identity = 72/244 (29.51%), Postives = 129/244 (52.87%), Query Frame = 0
Query:  114 VSTLASSPPSPSSSPALDPSFLPSNARVTDKVFFDISIAGVPAGTLSMGVFGDQAPVTVGNFLKVLNGQGQSA-SYMYSSVWRVLAGSCIDMGRVGGGGGKQLKREINESGVMRIK-TENAADWTRNTEVNGLKHAEPFLLTMVRGGGTFEFSVTTAPVPALDRDHVVFGRLLMKPEEKERESNQAVVDKIGRVK-VSTDDIVASKTLFAAAGKGF-DPRAK---IIYLNKPLQKIVVTAVGML 350
            V      PP+P+++P           R++D+ + D+ + G   G + +G++G++AP +V  F ++         SY YS++ +V     + +G++ G G K++ ++I+E+G +R+  T+ A   T NT+     H+   L+++ RGGGTFEF VT  P+P LDRD++V G++L             V+ ++ RVK +  +D+   +  F +  K   DPRA      Y   P+ K++   VG+L
Sbjct:   10 VHAAEEGPPTPATAP-----------RISDRCYLDMELNGKLLGRVVVGLWGEEAPTSVQTFAQLCGKTYPGGLSYAYSAMSKVFPNQLVVLGKITGDGTKKVDKKIDETGRVRVTYTDRATYETANTDSPSTSHSSEGLVSVRRGGGTFEFGVTLQPMPDLDRDYIVIGQVL---------EGMDVIKRLSRVKYIPPEDL---REAFRSVAKAIGDPRASGGGDAY--SPVAKVITKNVGLL 228          
BLAST of EWM23837.1 vs. NCBI_GenBank
Match: gi|922855594|gb|KOO24030.1| (peptidyl-prolyl cis-trans isomerase cyp20- chloroplastic-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 92.8189 bits (229), Expect = 2.333e-18
Identity = 67/215 (31.16%), Postives = 113/215 (52.56%), Query Frame = 0
Query:  136 PSNARVTDKVFFDISIAGVPAG--TLSMGVFGDQAPVTVGNFLKVLNGQ--GQSA-SYMYSSVWRVLAGSCIDMGRVGGGGGKQLKREINESGVMRIKTENAADWTRNTEVNGLKHAEPFLLTMVRGGGTFEFSVTTAPVPALDRDHVVFGRLLMKPEEKERESNQAVVDKIGRVKVSTDDIVASKTLFAAAGKGF-DPRAKIIYLNKPLQKIVV 344
            P   RVT +    I++    A    L + +FGD+AP +V  F  V +G   GQ+  +Y  +++ RV     I  G V  G G+ ++R I+ +G +R    + AD  +N++ N L+H  P  ++M +GGG F  ++  A   ALD  ++V G++LM    +E  S  +++ +I  V V      A  +++ A GK   DPR K+  + +PL+KI +
Sbjct:   16 PVKERVTAEAALTIAVGTTDAARRVLPIALFGDEAPGSVATFRGVCDGTLPGQAGVTYRGTTISRVERDRVIQAG-VASGSGQDVERSIDSTGYVRSVYVSRADAFKNSDTNELRHDRPGRVSMQKGGGDFRLTIAPAENRALDETNIVIGQVLMLDTAEESPST-SLLREINEVPVRQPK--AETSIYLALGKAAGDPRTKVETVYRPLRKISI 226          
BLAST of EWM23837.1 vs. NCBI_GenBank
Match: gi|551615378|ref|XP_005788569.1| (hypothetical protein EMIHUDRAFT_226708 [Emiliania huxleyi CCMP1516] >gi|485642033|gb|EOD36140.1| hypothetical protein EMIHUDRAFT_226708 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 82.4185 bits (202), Expect = 1.826e-14
Identity = 51/151 (33.77%), Postives = 78/151 (51.66%), Query Frame = 0
Query:  140 RVTDKVFFDISIAGVPAGTLSMGVFGDQAPVTVGNFLKVLNGQGQSA------SYMYSSVWRVLAGSCIDMGRVGGGGGKQLKREINESGVMRIKTENAADWTRNTEVNGLKHAEPFLLTMVRGGGTFEFSVTTAPVPALDRDHVVFGRLL 284
            ++T +    I+I   P  TLS+G++G  AP +V  F  +  G   +       +Y  SS+ R+     I  G + GG G+++ REI+ +G +R +T + AD   N + N L H    LL+M RGG  FEF +T     ALD   +V G +L
Sbjct:   15 QITSRAELRIAIGDSPPQTLSLGLYGTAAPESVALFEGLCRGISDAGRPPKTLTYAGSSISRIERDRIIVGGSLSGGNGRKVDREIDATGYVRTETLSRADAFANDDSNALPHDRAGLLSMRRGGRAFEFGLTPCANRALDATRIVVGEVL 165          
BLAST of EWM23837.1 vs. NCBI_GenBank
Match: gi|495951438|ref|WP_008676017.1| (cyclophilin [Rhodopirellula sallentina] >gi|460933643|gb|EMI57026.1| cyclophilin [Rhodopirellula sallentina SM41])

HSP 1 Score: 81.2629 bits (199), Expect = 1.924e-14
Identity = 56/161 (34.78%), Postives = 81/161 (50.31%), Query Frame = 0
Query:  136 PSNARVTDKVFFDISIAGVPAGTLSMGVFGDQAPVTVGNFLKVL---NGQGQSA---SYMYSSVWRVLAGSCI---DMGRVGGGGGKQLKREINESGVMRIKTENAADWTRNTEVNGLKHAEPFLLTMVRGGGTF---EFSVTTAPVPALDRDHVVFGRLL 284
            P  A VT+KV+FD++I G PAG + MG+FG   P TV NF  +     G+G+S     Y  S+  RV+ G  +   D  R  G GG+ +                 +D+  + E    +H++P +L+M   G      +F +TT P P LD  HVVFGR+L
Sbjct:   27 PMEAEVTNKVYFDVTIGGEPAGRIVMGLFGKDVPKTVENFRALCTGEKGEGKSGVPLDYEGSAFHRVIPGFMLQGGDFTRGNGTGGESIY---------------GSDF--DDENFKFRHSQPGILSMANAGKNTNGSQFFITTVPTPHLDGRHVVFGRVL 170          
BLAST of EWM23837.1 vs. NCBI_GenBank
Match: gi|1068408901|ref|XP_018051109.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme-like [Atta colombica])

HSP 1 Score: 79.7221 bits (195), Expect = 6.159e-14
Identity = 58/176 (32.95%), Postives = 81/176 (46.02%), Query Frame = 0
Query:  140 RVTDKVFFDISIAGVPAGTLSMGVFGDQAPVTVGNFLKVLNGQGQSASYMYSSVWRVLAGSCIDMGRVGGGGGKQLKREINESGVMRIKTENAADWTRNTEVNGLKHAEPFLLTMVRGG---GTFEFSVTTAPVPALDRDHVVFGRLLMKPEEKERESNQAVVDKIGRVKVSTDDI 312
            RVTD+V+FDI I   P G + +G+FGD AP TV NF+           Y  +   RV+    I  G V  G G         +G + I  +   D T       +KH  P +++M   G      +F +TT P P LD  H  FG+++         S +AVV KI + K  +DDI
Sbjct:   23 RVTDQVYFDIMIDNHPVGRIIIGLFGDIAPKTVKNFITFATTGIAGKKYAGTKFHRVVKKFMIQGGDVENGDG---------TGSISIYGKYFNDETFE-----IKHTGPLIVSMANAGKDTNGCQFFITTIPTPWLDDHHTAFGKVV---------SGEAVVFKIEQTKTDSDDI 175          
BLAST of EWM23837.1 vs. NCBI_GenBank
Match: gi|1025645528|gb|OAA33275.1| (peptidyl-prolyl cis-trans isomerase [Aschersonia aleyrodis RCEF 2490])

HSP 1 Score: 82.4185 bits (202), Expect = 6.661e-14
Identity = 63/190 (33.16%), Postives = 86/190 (45.26%), Query Frame = 0
Query:  144 KVFFDISIAGVPAGTLSMGVFGDQAPVTVGNFLKVLNGQ------GQSASYMYSSVWRVLAGSCIDMGRVGGGGGKQLKREINESGVMRIKTENAADWTRNTEVNGLKHAEPFLLTMVRGGGTF---EFSVTTAPVPALDRDHVVFGRLLMKPEEKERESNQAVVDKIGRVKVSTDDIVASKTLFAAAGK 324
            +VFFDISI G  AG ++M ++ D  P TV NF  +  G+      G+   Y  S   RV+    I  G    G G         +G   I  E  AD     E   LKH +PFLL+M   G      +F +TT P P LD  HVVFG +L         + +++V +I  +K    D  A + L A  G+
Sbjct:   10 RVFFDISIGGKAAGRITMELYSDLVPKTVENFRCLCTGEKGTGKSGKPLHYKGSVFHRVIKQFMIQGGDFTAGDG---------TGGESIYGEKFAD-----EAFPLKHEKPFLLSMANAGANTNGSQFFITTVPTPHLDGKHVVFGEVL---------NGKSIVRQIENLKTEAGDKPAKEALIADCGQ 176          
BLAST of EWM23837.1 vs. NCBI_GenBank
Match: gi|1070172541|ref|XP_018346489.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase A2-like isoform X2 [Trachymyrmex septentrionalis])

HSP 1 Score: 79.337 bits (194), Expect = 7.739e-14
Identity = 58/176 (32.95%), Postives = 81/176 (46.02%), Query Frame = 0
Query:  140 RVTDKVFFDISIAGVPAGTLSMGVFGDQAPVTVGNFLKVLNGQGQSASYMYSSVWRVLAGSCIDMGRVGGGGGKQLKREINESGVMRIKTENAADWTRNTEVNGLKHAEPFLLTMVRGGGT---FEFSVTTAPVPALDRDHVVFGRLLMKPEEKERESNQAVVDKIGRVKVSTDDI 312
            RVTD+V+FDI I   P G + +G+FGD AP TV NF+           Y  +   RV+    I  G V  G G         +G + I  +   D T       +KH  P +++M   G      +F +TT P P LD  H  FG+++         S +AVV KI + K  +DDI
Sbjct:   23 RVTDQVYFDIMIDNHPVGRIIIGLFGDIAPKTVKNFITFATTGIAGKKYAGTKFHRVIKKFMIQGGDVENGDG---------TGSISIYGKYFDDETFE-----VKHTGPLIVSMANAGKNTNGCQFFITTIPTPWLDDHHTAFGKVV---------SGEAVVFKIEQTKTDSDDI 175          
BLAST of EWM23837.1 vs. NCBI_GenBank
Match: gi|1009355368|gb|KYM80687.1| (Peptidyl-prolyl cis-trans isomerase B [Atta colombica])

HSP 1 Score: 82.4185 bits (202), Expect = 7.851e-14
Identity = 58/176 (32.95%), Postives = 81/176 (46.02%), Query Frame = 0
Query:  140 RVTDKVFFDISIAGVPAGTLSMGVFGDQAPVTVGNFLKVLNGQGQSASYMYSSVWRVLAGSCIDMGRVGGGGGKQLKREINESGVMRIKTENAADWTRNTEVNGLKHAEPFLLTMVRGG---GTFEFSVTTAPVPALDRDHVVFGRLLMKPEEKERESNQAVVDKIGRVKVSTDDI 312
            RVTD+V+FDI I   P G + +G+FGD AP TV NF+           Y  +   RV+    I  G V  G G         +G + I  +       N E   +KH  P +++M   G      +F +TT P P LD  H  FG+++         S +AVV KI + K  +DDI
Sbjct:  237 RVTDQVYFDIMIDNHPVGRIIIGLFGDIAPKTVKNFITFATTGIAGKKYAGTKFHRVVKKFMIQGGDVENGDG---------TGSISIYGK-----YFNDETFEIKHTGPLIVSMANAGKDTNGCQFFITTIPTPWLDDHHTAFGKVV---------SGEAVVFKIEQTKTDSDDI 389          
BLAST of EWM23837.1 vs. NCBI_GenBank
Match: gi|1069694902|ref|XP_018306896.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase A2-like [Trachymyrmex zeteki])

HSP 1 Score: 79.7221 bits (195), Expect = 9.981e-14
Identity = 58/176 (32.95%), Postives = 81/176 (46.02%), Query Frame = 0
Query:  140 RVTDKVFFDISIAGVPAGTLSMGVFGDQAPVTVGNFLKVLNGQGQSASYMYSSVWRVLAGSCIDMGRVGGGGGKQLKREINESGVMRIKTENAADWTRNTEVNGLKHAEPFLLTMVRGGGT---FEFSVTTAPVPALDRDHVVFGRLLMKPEEKERESNQAVVDKIGRVKVSTDDI 312
            RVTD+V+FDI I   P G + +G+FGD AP TV NF+           Y  +   RV+    I  G V  G G         +G + I  +   D     E   +KH  P +++M   G      +F +TT P P LD  H  FG+++         S +AVV KI + K  +DDI
Sbjct:   23 RVTDQVYFDIMIDNHPVGRIVIGLFGDIAPKTVKNFITFATTGIAGKKYAGTKFHRVIKKFMIQGGDVENGDG---------TGSISIYGKYFDD-----ETFKVKHTGPLIVSMANAGKNTNGCQFFITTIPTPWLDDRHTAFGKIV---------SGEAVVFKIEQTKTDSDDI 175          
The following BLAST results are available for this feature:
BLAST of EWM23837.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105105|gb|EWM23837.1|0.000e+0100.00peptidyl-prolyl cis-trans isomerase [Nannochlorops... [more]
gi|873228959|emb|CEM14588.1|3.161e-2429.51unnamed protein product [Vitrella brassicaformis C... [more]
gi|922855594|gb|KOO24030.1|2.333e-1831.16peptidyl-prolyl cis-trans isomerase cyp20- chlorop... [more]
gi|551615378|ref|XP_005788569.1|1.826e-1433.77hypothetical protein EMIHUDRAFT_226708 [Emiliania ... [more]
gi|495951438|ref|WP_008676017.1|1.924e-1434.78cyclophilin [Rhodopirellula sallentina] >gi|460933... [more]
gi|1068408901|ref|XP_018051109.1|6.159e-1432.95PREDICTED: peptidyl-prolyl cis-trans isomerase, rh... [more]
gi|1025645528|gb|OAA33275.1|6.661e-1433.16peptidyl-prolyl cis-trans isomerase [Aschersonia a... [more]
gi|1070172541|ref|XP_018346489.1|7.739e-1432.95PREDICTED: peptidyl-prolyl cis-trans isomerase A2-... [more]
gi|1009355368|gb|KYM80687.1|7.851e-1432.95Peptidyl-prolyl cis-trans isomerase B [Atta colomb... [more]
gi|1069694902|ref|XP_018306896.1|9.981e-1432.95PREDICTED: peptidyl-prolyl cis-trans isomerase A2-... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6850rna6850Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications