rna6840, rna6840 (mRNA) Nannochloropsis gaditana

Overview
Namerna6840
Unique Namerna6840
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1215
Alignment locationCM002469.1:619119..621063 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100865g2.7099.mrna
Orig protein idgnl|cribi|Naga_100865g2.7099
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:619119..621063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100865g2gene6612Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6840rna6840-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23850.1cds6824Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6840 ID=rna6840|Name=rna6840|organism=Nannochloropsis gaditana|type=mRNA|length=1215bp
ACGCCAGCAAACAAAAATCACGCATCGCGTCTACCACGCATTGACAGGTG
TTGTTACATTGGAGCGCTGCAGGATTTGTATCGCTTTCCCCGGGAGCGTG
GACGGGGCGCGTCCCTTTTGCTGCGTCCAATCCCGGTCGCAGGAAGCTGA
GGCACCGTGTTCACATGGCCGGCAATTCACAGCCTGCGTCCCGTTTGAAG
CCATCAATATGTTTGCATTTACTCTTAATGGTTATGAGCAGCTTGATAAC
TGCTGGCTCCGCCCGGGCATTTGCCCTTTTTCTCCGCCCATTTCCTTCAT
CTCCTCCCCATCACCTGCCCCTTGCCTCCCTGTCCTCCTCGTTGTCGAGC
ACTTCCCGTCTTTCTGACAGCAGAAGAGGCCACCACCCGACATGGATATC
AAGGAACAGGAGACCAAGAAGACGACTTTTCTTCACAACCGGACCCATAC
ACCAAACAATGGCTCCTTCCTCCACGTCCCCTGCGACCAACACCGCGACC
AACCGCTCTTGTTCGATTGATTTCGAGCGCCTGGGCCTTTTGCACGCCCC
CGTCCTCCAATCCCTTCGCAAAGCGGCGGTGAATGGCAACGTAGAAGAGG
CCGGTGCCCTAATCGCCCGCCTAGAGCTAGACCACGTGCCCCTGGACCTC
CTCACCCTCACCCACTACATGCAAGCTCACATCGTTCGACGCGATGCCCC
TGGCGCCGAAGCCGTGCTGGCCCGGATGAAAACGCTGGGGCTCTTGCCGG
ACATCGTCCCGTACTCGATGCTGTTGAATTTACACGCCAGTCGGGGCAAC
GTGGGCAAGGCGGAGGAGGTCTTCGGGACCATGAGGGAGGAGGGCGGCTT
GGTCCCGTCGGTCCGGGCGTACACGTCCTTGATGAAGGCCTATGCCGTCT
CACGGGACCCGGAGGGCGCCGAGGACGTCCTCTTTCGGATGGCGGCCGCC
GGTGTGGCCCCCGACGTCCACGCCTACACGATGCTCCTCCGGGCCTACGC
CAACGTGGGGGACGTGGCGGGGGCCGAGGATGTCATGCGCCGGGTGCTGT
TGGCGGTGGAGGGGGGGAAGGTGGGCGGGCGGGAAGGCGGGGAGGTGGTG
CCTGACCTGGTCATTTTCAATGCGTTGCTGCGTGTCTATGTGCGGAGCAA
AGGGCCCGATGCGGCCAGGTTAAGAGGAGGATGGGATGCGCGGGGAGGGA
GGGGGGGGAGGGCAA
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protein sequence of rna6840

>rna6840-protein ID=rna6840-protein|Name=rna6840|organism=Nannochloropsis gaditana|type=polypeptide|length=268bp
MSSCPQCYVGQCRKHKLQDHGARERALLSSRSELQRRLYESLVQPHVDTL
KTTKKATAEAEAGHCRYRDAVGKDREKAQRQKSKFSEEQVRKAQALGGLR
GDLLRTMLANDSDFEDGAEGGKEGNTGTSGEPADRKKKRRREAAEREERK
ARKKKKKALRKEEDRKKKKRKEEKWKKKKRRSDARSQEDPRDRSSPSAER
GTTAKQEPDTRGAKEGKVGEEMPTPPSLSPPVAGKASPLSGRSTSVGSSS
SSSSSSVSSEDEINGRAV
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mRNA from alignment at CM002469.1:619119..621063-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6840 ID=rna6840|Name=rna6840|organism=Nannochloropsis gaditana|type=mRNA|length=1945bp|location=Sequence derived from alignment at CM002469.1:619119..621063- (Nannochloropsis gaditana)
AATTCATAATGTTGCACAACTGTCAGGAGTAATCAACGAGGGGTTGAGTT GAAGTTTTGGACGGCCGTGTCGTAAGTATCTCCCTCTTTCCCAAGCTTAG GTTTTCACAATCTATTCCTTTCTTCTCTACGTCTCATAAAATTCTTTCTT CATATCCGTCTAATCAAGGTACTAAGGGCGCCGGGGCGGCACAACCAAGG TGTATGCCATAAAGAGAGTAAAGCTCTGTGGAAACGCATGCGTCACGCAC ATCGATGCTTTTGAGTGATACACACGGGTCAGCCTCTTACCTGCCTTGAA TCCTGCGGCAGAATCGTTCATCGAAGCCAAGATCTTTCTATTGACGGCGT TGCTGCGATGTCTTCTTGCCCTCAATGCTACGTGGGGCAATGCCGGAAAC ACAAGGTTTCTTCCTCCCTCCCCTCTCTCCCTTCCTTCAAGCCCCCCTCC CTCCTTTCGTTCCTCTTTCCCTCCTTCCCTTCACCTCGTCCTTATCTTTC CTCCTCATTTCTCCGATCATCATGCATGTAGAAACGAGAAAGAGCACCCA AAGAGGACGTCTCATCCGTTCTTAATATCGCCATCTCCCCTCGCATTCCG CCCTTACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTTCCTCT GTCAGCTTCAAGACCACGGAGCCCGCGAACGTGCCCTTCTCTCATCTCGA TCGGAGCTGCAAAGGCGTCTGTACGAGAGCCTGGTCCAACCGCATGTGGA CACGTTGAAAACCACCAAAAAAGCCACGGCCGAGGCGGAGGCCGGTCACT GCCGGTATCGAGACGCGGTTGGAAAAGACAGAGAGAAAGCCCAGAGGCAG AAGTCCAAATTCAGCGAAGAGCAGGTTCGAAAAGTGAGTAAAAAGGGATG GAGAGGGGGGGCGAGGATACAGTGTGTGAGGACCCCAGGGGTGTATGGCT TGGTTAGGCAATAGGGTGCGGCTTCTACGCGTGGCCATACAGATGCGTGC GCAGATGGGATTGCATGATTGAATTAGCTGGATCGCAAACAAAATTTTCT CATCTGCGTTCTTAGGCACAGGCCCTTGGCGGCCTTCGCGGCGACCTTTT GAGGACCATGCTGGCGAACGACAGCGATTTTGAGGACGGGGCGGAAGGGG GGAAGGAGGGAAATACAGGCACGTCGGGAGAGCCGGCGGACAGGTAGGTG GGGGTGGTGGAAAGGGAAATAATAGTGAGAGATGGGGTAAGTGGGCTGGG AAGAGATGGCTTGGTTACGTATTGAATGGCCGTGTGTCTCGTTATCCACT CTTGTTTTCCCGTAGGAAGAAAAAACGAAGACGGGAAGCTGCGGAGCGGG AGGAGCGGAAAGCAAGGAAAAAGAAGAAGAAGGCGCTACGGAAAGAGGAG GACAGGAAGAAGAAGAAGCGGAAGGAGGAGAAATGGAAGAAGAAAAAGAG GAGGAGTGACGCCCGCAGCCAGGAAGATCCGAGGGACAGGTCAAGTCCAA GTGCCGAAAGAGGAACGACAGCGAAGCAAGAGCCAGATACGCGGGGAGCC AAGGAAGGGAAGGTTGGAGAGGAGATGCCCACGCCGCCTTCGCTCTCCCC ACCCGTCGCAGGGAAGGCAAGCCCGCTCAGCGGTCGAAGCACGTCGGTCG GTTCCTCATCGTCCTCTTCCTCATCGTCCGTATCCTCAGAGGATGAAATT AACGGTCGGGCTGTATGAAGACTCAGGATGGTGGGAAGTGGAGGAACGGA TGCTTCGCGCCATGTCAGCGGCGAAGAGACGGGCCTGAGGGGTTAAGAAG GACAGCAGCGACGGCATTGCATGAAGGTCGGACCGACATATTGCACAAAG CGGAGTAGGGGAATACATTTAAGAACTGGATATATCTACGATGTTGGAAA GCGGGAGATAACTTCAAGTAAAGCACCATTCGAAGCAAGTGTTGA
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Coding sequence (CDS) from alignment at CM002469.1:619119..621063-

>rna6840 ID=rna6840|Name=rna6840|organism=Nannochloropsis gaditana|type=CDS|length=3228bp|location=Sequence derived from alignment at CM002469.1:619119..621063- (Nannochloropsis gaditana)
GAAGAAAAAACGAAGACGGGAAGCTGCGGAGCGGGAGGAGCGGAAAGCAA
GGAAAAAGAAGAAGAAGGCGCTACGGAAAGAGGAGGACAGGAAGAAGAAG
AAGCGGAAGGAGGAGAAATGGAAGAAGAAAAAGAGGAGGAGTGACGCCCG
CAGCCAGGAAGATCCGAGGGACAGGTCAAGTCCAAGTGCCGAAAGAGGAA
CGACAGCGAAGCAAGAGCCAGATACGCGGGGAGCCAAGGAAGGGAAGGTT
GGAGAGGAGATGCCCACGCCGCCTTCGCTCTCCCCACCCGTCGCAGGGAA
GGCAAGCCCGCTCAGCGGTCGAAGCACGTCGGTCGGTTCCTCATCGTCCT
CTTCCTCATCGTCCGTATCCTCAGAGGATGAAATTAACGGTCGGGCTGTA
TGAGCACAGGCCCTTGGCGGCCTTCGCGGCGACCTTTTGAGGACCATGCT
GGCGAACGACAGCGATTTTGAGGACGGGGCGGAAGGGGGGAAGGAGGGAA
ATACAGGCACGTCGGGAGAGCCGGCGGACAGCTTCAAGACCACGGAGCCC
GCGAACGTGCCCTTCTCTCATCTCGATCGGAGCTGCAAAGGCGTCTGTAC
GAGAGCCTGGTCCAACCGCATGTGGACACGTTGAAAACCACCAAAAAAGC
CACGGCCGAGGCGGAGGCCGGTCACTGCCGGTATCGAGACGCGGTTGGAA
AAGACAGAGAGAAAGCCCAGAGGCAGAAGTCCAAATTCAGCGAAGAGCAG
GTTCGAAAAATGTCTTCTTGCCCTCAATGCTACGTGGGGCAATGCCGGAA
ACACAAGGAAGAAAAAACGAAGACGGGAAGCTGCGGAGCGGGAGGAGCGG
AAAGCAAGGAAAAAGAAGAAGAAGGCGCTACGGAAAGAGGAGGACAGGAA
GAAGAAGAAGCGGAAGGAGGAGAAATGGAAGAAGAAAAAGAGGAGGAGTG
ACGCCCGCAGCCAGGAAGATCCGAGGGACAGGTCAAGTCCAAGTGCCGAA
AGAGGAACGACAGCGAAGCAAGAGCCAGATACGCGGGGAGCCAAGGAAGG
GAAGGTTGGAGAGGAGATGCCCACGCCGCCTTCGCTCTCCCCACCCGTCG
CAGGGAAGGCAAGCCCGCTCAGCGGTCGAAGCACGTCGGTCGGTTCCTCA
TCGTCCTCTTCCTCATCGTCCGTATCCTCAGAGGATGAAATTAACGGTCG
GGCTGTATGAGCACAGGCCCTTGGCGGCCTTCGCGGCGACCTTTTGAGGA
CCATGCTGGCGAACGACAGCGATTTTGAGGACGGGGCGGAAGGGGGGAAG
GAGGGAAATACAGGCACGTCGGGAGAGCCGGCGGACAGCTTCAAGACCAC
GGAGCCCGCGAACGTGCCCTTCTCTCATCTCGATCGGAGCTGCAAAGGCG
TCTGTACGAGAGCCTGGTCCAACCGCATGTGGACACGTTGAAAACCACCA
AAAAAGCCACGGCCGAGGCGGAGGCCGGTCACTGCCGGTATCGAGACGCG
GTTGGAAAAGACAGAGAGAAAGCCCAGAGGCAGAAGTCCAAATTCAGCGA
AGAGCAGGTTCGAAAAATGTCTTCTTGCCCTCAATGCTACGTGGGGCAAT
GCCGGAAACACAAGGAAGAAAAAACGAAGACGGGAAGCTGCGGAGCGGGA
GGAGCGGAAAGCAAGGAAAAAGAAGAAGAAGGCGCTACGGAAAGAGGAGG
ACAGGAAGAAGAAGAAGCGGAAGGAGGAGAAATGGAAGAAGAAAAAGAGG
AGGAGTGACGCCCGCAGCCAGGAAGATCCGAGGGACAGGTCAAGTCCAAG
TGCCGAAAGAGGAACGACAGCGAAGCAAGAGCCAGATACGCGGGGAGCCA
AGGAAGGGAAGGTTGGAGAGGAGATGCCCACGCCGCCTTCGCTCTCCCCA
CCCGTCGCAGGGAAGGCAAGCCCGCTCAGCGGTCGAAGCACGTCGGTCGG
TTCCTCATCGTCCTCTTCCTCATCGTCCGTATCCTCAGAGGATGAAATTA
ACGGTCGGGCTGTATGAGCACAGGCCCTTGGCGGCCTTCGCGGCGACCTT
TTGAGGACCATGCTGGCGAACGACAGCGATTTTGAGGACGGGGCGGAAGG
GGGGAAGGAGGGAAATACAGGCACGTCGGGAGAGCCGGCGGACAGCTTCA
AGACCACGGAGCCCGCGAACGTGCCCTTCTCTCATCTCGATCGGAGCTGC
AAAGGCGTCTGTACGAGAGCCTGGTCCAACCGCATGTGGACACGTTGAAA
ACCACCAAAAAAGCCACGGCCGAGGCGGAGGCCGGTCACTGCCGGTATCG
AGACGCGGTTGGAAAAGACAGAGAGAAAGCCCAGAGGCAGAAGTCCAAAT
TCAGCGAAGAGCAGGTTCGAAAAATGTCTTCTTGCCCTCAATGCTACGTG
GGGCAATGCCGGAAACACAAGGAAGAAAAAACGAAGACGGGAAGCTGCGG
AGCGGGAGGAGCGGAAAGCAAGGAAAAAGAAGAAGAAGGCGCTACGGAAA
GAGGAGGACAGGAAGAAGAAGAAGCGGAAGGAGGAGAAATGGAAGAAGAA
AAAGAGGAGGAGTGACGCCCGCAGCCAGGAAGATCCGAGGGACAGGTCAA
GTCCAAGTGCCGAAAGAGGAACGACAGCGAAGCAAGAGCCAGATACGCGG
GGAGCCAAGGAAGGGAAGGTTGGAGAGGAGATGCCCACGCCGCCTTCGCT
CTCCCCACCCGTCGCAGGGAAGGCAAGCCCGCTCAGCGGTCGAAGCACGT
CGGTCGGTTCCTCATCGTCCTCTTCCTCATCGTCCGTATCCTCAGAGGAT
GAAATTAACGGTCGGGCTGTATGAGCACAGGCCCTTGGCGGCCTTCGCGG
CGACCTTTTGAGGACCATGCTGGCGAACGACAGCGATTTTGAGGACGGGG
CGGAAGGGGGGAAGGAGGGAAATACAGGCACGTCGGGAGAGCCGGCGGAC
AGCTTCAAGACCACGGAGCCCGCGAACGTGCCCTTCTCTCATCTCGATCG
GAGCTGCAAAGGCGTCTGTACGAGAGCCTGGTCCAACCGCATGTGGACAC
GTTGAAAACCACCAAAAAAGCCACGGCCGAGGCGGAGGCCGGTCACTGCC
GGTATCGAGACGCGGTTGGAAAAGACAGAGAGAAAGCCCAGAGGCAGAAG
TCCAAATTCAGCGAAGAGCAGGTTCGAAAAATGTCTTCTTGCCCTCAATG
CTACGTGGGGCAATGCCGGAAACACAAG
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Synonyms
Publications