EWM23850.1, cds6824 (CDS) Nannochloropsis gaditana

Overview
NameEWM23850.1
Unique Namecds6824
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:620659..620706 -
Alignment locationCM002469.1:620181..620408 -
Alignment locationCM002469.1:619871..619998 -
Alignment locationCM002469.1:619346..619748 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23850.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100865g2.7099.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:620659..620706 -
CM002469.1supercontigCM002469.1:620181..620408 -
CM002469.1supercontigCM002469.1:619871..619998 -
CM002469.1supercontigCM002469.1:619346..619748 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23850.1 vs. NCBI_GenBank
Match: gi|585105121|gb|EWM23850.1| (hypothetical protein Naga_100865g2 [Nannochloropsis gaditana])

HSP 1 Score: 530.791 bits (1366), Expect = 0.000e+0
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0 
Query:    1 MSSCPQCYVGQCRKHKLQDHGARERALLSSRSELQRRLYESLVQPHVDTLKTTKKATAEAEAGHCRYRDAVGKDREKAQRQKSKFSEEQVRKAQALGGLRGDLLRTMLANDSDFEDGAEGGKEGNTGTSGEPADRKKKRRREAAEREERKARKKKKKALRKEEDRKKKKRKEEKWKKKKRRSDARSQEDPRDRSSPSAERGTTAKQEPDTRGAKEGKVGEEMPTPPSLSPPVAGKASPLSGRSTSVGSSSSSSSSSVSSEDEINGRAV 268
            MSSCPQCYVGQCRKHKLQDHGARERALLSSRSELQRRLYESLVQPHVDTLKTTKKATAEAEAGHCRYRDAVGKDREKAQRQKSKFSEEQVRKAQALGGLRGDLLRTMLANDSDFEDGAEGGKEGNTGTSGEPADRKKKRRREAAEREERKARKKKKKALRKEEDRKKKKRKEEKWKKKKRRSDARSQEDPRDRSSPSAERGTTAKQEPDTRGAKEGKVGEEMPTPPSLSPPVAGKASPLSGRSTSVGSSSSSSSSSVSSEDEINGRAV
Sbjct:    1 MSSCPQCYVGQCRKHKLQDHGARERALLSSRSELQRRLYESLVQPHVDTLKTTKKATAEAEAGHCRYRDAVGKDREKAQRQKSKFSEEQVRKAQALGGLRGDLLRTMLANDSDFEDGAEGGKEGNTGTSGEPADRKKKRRREAAEREERKARKKKKKALRKEEDRKKKKRKEEKWKKKKRRSDARSQEDPRDRSSPSAERGTTAKQEPDTRGAKEGKVGEEMPTPPSLSPPVAGKASPLSGRSTSVGSSSSSSSSSVSSEDEINGRAV 268
[Close]
BLAST of EWM23850.1 vs. NCBI_GenBank
Match: gi|299472476|emb|CBN77261.1| (hypothetical protein Esi_0044_0015 [Ectocarpus siliculosus])

HSP 1 Score: 74.3294 bits (181), Expect = 2.938e-12
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 0 
Query:    1 MSSCPQCYVGQCRKHKLQDHGARERALLSSRSE---LQRRLYESLVQPHVDTLKTTKKATAEAEAGHCR-YRDAVGKDREKAQRQKSKFSEEQVRKAQALGGLRGDLLRTML 108
            MS CP C+VGQC++HKLQDHG RE  L S   +    Q+RL++ +V   +D L+   +    A AG    Y+ +V K R++A+R+ +K S +Q R+A A   L G L+ TML
Sbjct:    1 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARG---ANAGDQEIYKASVSKARDRAERRGNKLSSKQQRQA-AKSRLGGHLVHTML 108
The following BLAST results are available for this feature:
BLAST of EWM23850.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105121|gb|EWM23850.1|0.000e+0100.00hypothetical protein Naga_100865g2 [Nannochloropsi... [more]
gi|299472476|emb|CBN77261.1|2.938e-1241.96hypothetical protein Esi_0044_0015 [Ectocarpus sil... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6840rna6840Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications