rna6839, rna6839 (mRNA) Nannochloropsis gaditana

Overview
Namerna6839
Unique Namerna6839
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1149
Alignment locationCM002469.1:617120..618334 -

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Properties
Property NameValue
ProductTetratricopeptide-like helical
Orig transcript idgnl|cribi|Naga_100865g1.7097.mrna
Orig protein idgnl|cribi|Naga_100865g1.7097
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:617120..618334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100865g1gene6611Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23848.1cds6823Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6839rna6839-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6839 ID=rna6839|Name=rna6839|organism=Nannochloropsis gaditana|type=mRNA|length=1149bp
ATGCCGCCATTACGCCGCTTTTGGCAACCCACACTACCATTGCTGTACCT
ATTATTCGGGAAAGTCGCAGCCCTTCCCGCAGAGACGCATCCATTTCCCG
CCAATCTTCGCCGTGAGGTCTCGGCCTCCGGGGAGGACTCACTTCGCACG
CATTTTGTAGACTCTATCCCGCGTGCTCTGCTTGGAATTAATTACGGTGT
TGGTTTAGCCAAGAATCCCTTACCTTTCGGTCAAGCATTTGCGCTGCTGC
GCGATATAGGTGTGAATAAAATCAAGCTTTTTGACCACGACATGGCGACG
CTAGAGGTCATATCCTCAACGATCCCGAATGCCGCTGTCACAATCGGTTT
TTCGACGGAGGAGATGCTGTCCCTCGCTGACCATCCCTCCCTTGCCTTTG
AAGCCCTCCAACCCCTGCAAGTGTACGACTCTCTCATTCAATATATCGCT
CTGGCCAGCGAACCCAACGAAAGTCTACCTCCCTCCACCCTATCTCGCGC
TCTCCCACGTGCCTTGACGCAGGTCAACAGCGCCTTGGACAACCTCGATA
TGCGTGCCAAAGTGACTGTGCCCTTCACCATGGCGCTTCTGCACCCTCTG
CATACCCCCGCCCTTTTCCTTGAAGCTTGGAACAAAACCCTTTCCCTCAT
CCTCCCCATCTTCCACGAGAGAAAGGCTCCTTTCATGATGAATATTCACC
CGTACCCCGCTTACGTGGAGGCTCTCGCCGAGCCTGGTTCTGACCCAAGC
GCAGGAGAAGGCATTCCCTTGGCCTACGCCTTGGGCTCTGCAGGGGAGCT
CCGAAATGGGAGCTGGTTGGAGGCAGAGTACAAGCGGGTCCGGGAGGCTC
TGACCGGATGGGGGTATCCTAGCATGCGGGTTGTGATCGGGGAGACGGGG
TGGCCGACGGCTGGGGGCGAGGCGGCAACAGTGGAGAATGCATGCACGTA
CGTGAACGGGCTGGTCTCATGGGTAGGTCTGGGGGTGGAAGAGGGGGAGG
CGGGGAGGGAAGTGTACGTGTTCGAGGCTTTCGACGAGGAATTGAAGCCA
GCGGAAGGCATCGAGCCGCACTGGGGTTTAATGACGGAGAGGGGGGTGTC
CAAATTTAGGGTGCAATGGCAAGGCCAGGGTGAAAGGTCATCACTTTAA
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protein sequence of rna6839

>rna6839-protein ID=rna6839-protein|Name=rna6839|organism=Nannochloropsis gaditana|type=polypeptide|length=350bp
MAGNSQPASRLKPSICLHLLLMVMSSLITAGSARAFALFLRPFPSSPPHH
LPLASLSSSLSSTSRLSDSRRGHHPTWISRNRRPRRRLFFTTGPIHQTMA
PSSTSPATNTATNRSCSIDFERLGLLHAPVLQSLRKAAVNGNVEEAGALI
ARLELDHVPLDLLTLTHYMQAHIVRRDAPGAEAVLARMKTLGLLPDIVPY
SMLLNLHASRGNVGKAEEVFGTMREEGGLVPSVRAYTSLMKAYAVSRDPE
GAEDVLFRMAAAGVAPDVHAYTMLLRAYANVGDVAGAEDVMRRVLLAVEG
GKVGGREGGEVVPDLVIFNALLRVYVRSKGPDAARLRGGWDARGGRGGRA
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mRNA from alignment at CM002469.1:617120..618334-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6839 ID=rna6839|Name=rna6839|organism=Nannochloropsis gaditana|type=mRNA|length=1215bp|location=Sequence derived from alignment at CM002469.1:617120..618334- (Nannochloropsis gaditana)
ACGCCAGCAAACAAAAATCACGCATCGCGTCTACCACGCATTGACAGGTG
TTGTTACATTGGAGCGCTGCAGGATTTGTATCGCTTTCCCCGGGAGCGTG
GACGGGGCGCGTCCCTTTTGCTGCGTCCAATCCCGGTCGCAGGAAGCTGA
GGCACCGTGTTCACATGGCCGGCAATTCACAGCCTGCGTCCCGTTTGAAG
CCATCAATATGTTTGCATTTACTCTTAATGGTTATGAGCAGCTTGATAAC
TGCTGGCTCCGCCCGGGCATTTGCCCTTTTTCTCCGCCCATTTCCTTCAT
CTCCTCCCCATCACCTGCCCCTTGCCTCCCTGTCCTCCTCGTTGTCGAGC
ACTTCCCGTCTTTCTGACAGCAGAAGAGGCCACCACCCGACATGGATATC
AAGGAACAGGAGACCAAGAAGACGACTTTTCTTCACAACCGGACCCATAC
ACCAAACAATGGCTCCTTCCTCCACGTCCCCTGCGACCAACACCGCGACC
AACCGCTCTTGTTCGATTGATTTCGAGCGCCTGGGCCTTTTGCACGCCCC
CGTCCTCCAATCCCTTCGCAAAGCGGCGGTGAATGGCAACGTAGAAGAGG
CCGGTGCCCTAATCGCCCGCCTAGAGCTAGACCACGTGCCCCTGGACCTC
CTCACCCTCACCCACTACATGCAAGCTCACATCGTTCGACGCGATGCCCC
TGGCGCCGAAGCCGTGCTGGCCCGGATGAAAACGCTGGGGCTCTTGCCGG
ACATCGTCCCGTACTCGATGCTGTTGAATTTACACGCCAGTCGGGGCAAC
GTGGGCAAGGCGGAGGAGGTCTTCGGGACCATGAGGGAGGAGGGCGGCTT
GGTCCCGTCGGTCCGGGCGTACACGTCCTTGATGAAGGCCTATGCCGTCT
CACGGGACCCGGAGGGCGCCGAGGACGTCCTCTTTCGGATGGCGGCCGCC
GGTGTGGCCCCCGACGTCCACGCCTACACGATGCTCCTCCGGGCCTACGC
CAACGTGGGGGACGTGGCGGGGGCCGAGGATGTCATGCGCCGGGTGCTGT
TGGCGGTGGAGGGGGGGAAGGTGGGCGGGCGGGAAGGCGGGGAGGTGGTG
CCTGACCTGGTCATTTTCAATGCGTTGCTGCGTGTCTATGTGCGGAGCAA
AGGGCCCGATGCGGCCAGGTTAAGAGGAGGATGGGATGCGCGGGGAGGGA
GGGGGGGGAGGGCAA
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Coding sequence (CDS) from alignment at CM002469.1:617120..618334-

>rna6839 ID=rna6839|Name=rna6839|organism=Nannochloropsis gaditana|type=CDS|length=1051bp|location=Sequence derived from alignment at CM002469.1:617120..618334- (Nannochloropsis gaditana)
ATGGCCGGCAATTCACAGCCTGCGTCCCGTTTGAAGCCATCAATATGTTT
GCATTTACTCTTAATGGTTATGAGCAGCTTGATAACTGCTGGCTCCGCCC
GGGCATTTGCCCTTTTTCTCCGCCCATTTCCTTCATCTCCTCCCCATCAC
CTGCCCCTTGCCTCCCTGTCCTCCTCGTTGTCGAGCACTTCCCGTCTTTC
TGACAGCAGAAGAGGCCACCACCCGACATGGATATCAAGGAACAGGAGAC
CAAGAAGACGACTTTTCTTCACAACCGGACCCATACACCAAACAATGGCT
CCTTCCTCCACGTCCCCTGCGACCAACACCGCGACCAACCGCTCTTGTTC
GATTGATTTCGAGCGCCTGGGCCTTTTGCACGCCCCCGTCCTCCAATCCC
TTCGCAAAGCGGCGGTGAATGGCAACGTAGAAGAGGCCGGTGCCCTAATC
GCCCGCCTAGAGCTAGACCACGTGCCCCTGGACCTCCTCACCCTCACCCA
CTACATGCAAGCTCACATCGTTCGACGCGATGCCCCTGGCGCCGAAGCCG
TGCTGGCCCGGATGAAAACGCTGGGGCTCTTGCCGGACATCGTCCCGTAC
TCGATGCTGTTGAATTTACACGCCAGTCGGGGCAACGTGGGCAAGGCGGA
GGAGGTCTTCGGGACCATGAGGGAGGAGGGCGGCTTGGTCCCGTCGGTCC
GGGCGTACACGTCCTTGATGAAGGCCTATGCCGTCTCACGGGACCCGGAG
GGCGCCGAGGACGTCCTCTTTCGGATGGCGGCCGCCGGTGTGGCCCCCGA
CGTCCACGCCTACACGATGCTCCTCCGGGCCTACGCCAACGTGGGGGACG
TGGCGGGGGCCGAGGATGTCATGCGCCGGGTGCTGTTGGCGGTGGAGGGG
GGGAAGGTGGGCGGGCGGGAAGGCGGGGAGGTGGTGCCTGACCTGGTCAT
TTTCAATGCGTTGCTGCGTGTCTATGTGCGGAGCAAAGGGCCCGATGCGG
CCAGGTTAAGAGGAGGATGGGATGCGCGGGGAGGGAGGGGGGGGAGGGCA
A
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Synonyms
Publications