rna6835, rna6835 (mRNA) Nannochloropsis gaditana

Overview
Namerna6835
Unique Namerna6835
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2024
Alignment locationCM002469.1:608240..610626 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100464g6.7487.mrna
Orig protein idgnl|cribi|Naga_100464g6.7487
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:608240..610626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100464g6gene6607Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6835rna6835-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23853.1cds6819Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6835 ID=rna6835|Name=rna6835|organism=Nannochloropsis gaditana|type=mRNA|length=2024bp
CCCGTACAGGGTGGAAATCTTTTCAACCCCCTTGACGAATGCACTTCCAA
ATGCACATTCGGCACATTGTGACACAGAAATCTCCTTCGGTCCCAACGTT
TGGCTTATTGAGGGCTCTCAAGTGTTGGCCTCTGGATTTTTTACTCTAGA
AACGAGGAGGACGCGGAAGGTGAAGCAGCAGCCTTGCAGTCCTCTTCAAG
ATCGGGAATCGGCCGATATATACACGCGTCATTGTATGCACAGTATGGCT
GATTTTCGTTAATTGAACGGACGAGGAAAGGAAAACTTTCCAGTGCTTAC
GATCACGAGAGCAGCAAGAGCAGCGTCGTGGTCGTCGTTGAAGAACGGGC
GGTGATTGCGATACCTTCTACTGCTCGTTCGTTTTCTCCACATCACAGCA
AAAACACCGGCAAATCATCATAGAATCCGTCACTGATGTCGGGCACGAAC
GAAAGCATTCCCCAGGAATGGGCGTTCACCATGTTTGAGGCCATGCAGAA
GGCAGCGGAGATCATTCTTCGCGCTCGGACAAAGGACTTGAAGGCAGGGC
CGGAGCGAGCGTACACAGCCACATTACCGCCCCATGGCCACCAGAGCGGG
AGCAGCAATCATGGAAACGTGAGCAGCAGCAGCAGTCGTCGATTTCGACT
GAATTTGGAGGTGGAGGAAGTGAGCACGGTGCGGCGCGGTCTGGCGGCCT
GGAAGGAGTCTTTGCACACGCCCCTGGTGTTGGACCTGATCTTTCAGGGA
CCGCCGTCGCCGCCCCTGGCCGGTGAGAGAGAGCAAGTGGCGGAAACCAC
GGGAGAAGAAGGCAGTCAAGACCTTCTAGAACGTTGGTACATTGTGTTCG
AGCCCTTGACGTCCTCCGTGAGCTCGCCGTTCCGAGGGAGTGGGGGTCGG
CAGGTGGAAGGTGGGGGATTCGCCCTCCAAGCCCAGGTAAAACGCGCCCA
GAAACGTCTCTCTGTGCTGCTTCGGACATTGTACGGTTTTTTGCGGCTGA
TGCCGTCGCAGGAAGTGGTGAAACAGCTTGCTGAGACGGGGCCGGGGGAG
GAGCGCGCCTTCGTCTTCCCCGCCATCCATGCCGGCCTTGCCAACACCCT
CCGTCAAGACATGGACACGTTGTTGGCCGGTCCCGAGGAAGGGAGGGAGG
GAGGTGCGGAAGGTGGGGTCTTCGAATCCCACCGGTTCCCGGAGGTGACG
ACCCCCTTTGGCGTTTTTCGGCTGAACGTTGCCTACAGGCGCAGTGTTTC
CGTCTTCGAAAGGGTGGCGGCCGCCGCAGCCGCAGCGGCGGCCACGTGTC
AGGCAGAAAATGGGTCGGTGCAATCGACGGCGATCTACCCCAACTACGTG
GCACCCGGGGAAGAGGAAGGGAGGGAAGGATGGAGGGAAGGAGGGGCGAC
GAGAGCCCCTCCCTCGACAGAGAGCGGCCTGGCGCATGCTTTGCGAGACT
ACGCGGCAGAGAAACGTGCGGCGGCCGGGAAGAAGGAGGCAGGGCGGGGG
GAAGACAAGGCGGGAGGACAGCATCGGACCCCTCCGCCCCCGGCGTCGAC
TCAGCCTGCCTCGTTCTCCGCCTCTGGGACCCGTCAGCGCGAGGGCCACG
ATCGAAGCTACCCGCCCCCCCGCCCCAGCCCCCACCCGTCCCCGTCCTCC
AATGCGACCTCCGCCCCTTCCTCGTCCTCCTTCCCCACCTCCCTCCCTCA
CGCCTCCCCCTCCGTCTTCCCCCCCCCTCCCCTCCATGCCGCCTTCGCCC
ACGAGGATTACGCCCGGCACCGGTCCTTCTCCTCCTTCTCCTCCTCTTCC
CCCTTCTCCTCTTCGCCGTCTCCCTCCCAGCTGCCTCCCTCTCCCTTCCC
CCCCCGAGATCCCTCTCCCACCCCTCCGCCCCCCCCGGCTGCGTCGCGGG
AAACCTACAATGCGCCCCCATTCGGATACCCGGAGCCACCGCCCCCACCC
CGGCCTCAGGGAAAGGCGCGCACGGCGTCCCAGGAGGCAAGCGTTGGGAA
AGGAGGGAGGGAGGGAGGGAAGGA
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protein sequence of rna6835

>rna6835-protein ID=rna6835-protein|Name=rna6835|organism=Nannochloropsis gaditana|type=polypeptide|length=361bp
MLCADGGVFSSRCANFGLITVTIRPYRLSPSAFWMKCVFSTSTFLLSCTL
LVVSPRFNDAFLRGEMSPRELATVVDLPSISVNVNEDGGVSVSTPWGSVN
TDSNGTSVHGFTPTSIGNVTCANLGPWDTAAEPTCETALPAFYESTTTFA
GTSKPKIRKITMDTFCTTPCGDTWTRAVFAHSLRCSPGVGGNGSAAGGVV
VDVPGAAVSTGPGGNVDVQAPGTTVTRDPGTGAVQVEFPGGRVHAGNGSV
AVTSAASPAQTARTSAATTSGGPTFPVDYPGLRLGCIKDPKDEEFCAVKR
AAVPGVGGDAEDGGPACDFYLSCCYAQYVQTFGSVPTEFVEEVEAACPGS
TLFLQGSVCTA
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mRNA from alignment at CM002469.1:608240..610626+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6835 ID=rna6835|Name=rna6835|organism=Nannochloropsis gaditana|type=mRNA|length=2387bp|location=Sequence derived from alignment at CM002469.1:608240..610626+ (Nannochloropsis gaditana)
AAGTGTTGCCATCATTTCTGTTCCTGATTTCTGCCAAGATGCATGCATTG
CTTTCGCTGGACAATCACTCACGTTTGGTTCACGTTGTGCGTTGCGTCGA
TTGATACCTCCGTTTTATGACATCTTGGGGGCAAATTTCTCGTTTGCTTC
TCTCCCAGACAAGGGAAGGATCGAGTTGAACCTCTTTCCCTGGCTGGTCA
CTTGTTGTCTTGTTCAGAATATTCTACTTCGTGACCGGTCACATGGATCA
AATCACACTCATGCTGGAAAACCATGCTGTTAGCCATATATAACGCGACC
TTGTATCCATTCTTGGCGGATATGGTTATATTTGGTTTGCGTGTCCTTGT
CGACCGACGCGAATCGTACGCTTGGCTCCTGCACCTCCTTCGAAGCAAGG
GTGAACATCCTTTTCTGAGCCCACTATTGCATGGACTTTTCTGTTTTTTC
TGTTTCTTATCTTGATCTCCTTGCTTTTGCGTAAGGAATGCTTTGTGCTG
ATGGTGGCGTCTTTTCATCGCGATGCGCAAATTTTGGTCTCATTACTGTT
ACTATCCGACCGTACAGATTATCACCGAGCGCTTTCTGGATGAAGTGCGT
ATTTTCGACTTCCACCTTCCTTTTAAGCTGCACACTCCTAGTCGTATCTC
CTCGCTTCAATGATGCTTTCCTCCGTGGTGAGATGTCCCCGAGGGAGCTT
GCGACGGTCGTGGACCTCCCCAGTATATCGGTCAATGTGaacgaggatgg
aggcgtcTCGGTGTCGACGCCCTGGGGTTCAGTAAATACGGATAGCAACG
GTACCAGCGTTCATGGTTTCACTCCCACGAGCATTGGCAATGTGACGTGT
GCGAATTTGGGTCCTTGGGATACGGCCGCGGAACCGACGTGCGAGACAGC
CTTGCCAGCTTTCTACGAGTCGACCACCACCTTCGCCGGGACTTCGAAAC
CGAAAATCCGAAAAATTACTATGGACACGTTCTGCACCACACCCTGCGGC
GACACCTGGACCCGGGCCGTTTTTGCCCACAGCTTGCGGTGTTCCCCTGG
CGTAGGAGGGAACGGCTCGGCGGCCGGAGGAGTGGTTGTCGACGTACCGG
GAGCCGCGGTATCCACAGGACCGGGCGGAAATGTGGATGTACAGGCCCCT
GGCACGACCGTGACAAGAGATCCGGGCACGGGTGCCGTCCAGGTGGAGTt
cccggggggaagggtgcaCGCGGGGAATGGGAGCGTTGCGGTTACgtcgg
cggcctcccccgcccagaCAGCACGCACGTCGGCCGCCACGACCTCAGGA
GGGCCCACCTTCCCCGTGGATTATCCGGGCCTGCGCCTGGGTTGCATCAA
GGACcccaaggacgaggagttTTGCGCGGTGAAACGGGCGGCAGTGCCGG
GGGTAGGGGGAGACgcggaggacggaggccccGCTTGCGATTTTTATCTC
TCCTGCTGCTACGCCCAGTATGTGCAAACCTTTGGCAGCGTGCCAACTGA
AtttgtggaggaggtagaggcggcTTGCCCGGGTTCGACGTTGTTTTTGC
AAGGCAGTGTCTGTACGGCGTAGGAGGGGGGAGTAAAGGGGGAATAAGGA
TACTTTGGGGGGTACGGATGCTTCAGGTAGTATGGTCTTAAGGGAGGCAA
CGGGGTGCTGTGGCCTACCGAGCACtagaggaagggacgacGGGACTTGA
AAATAAGAAAATAAGGGCGGACGATAGAAAATATGCGTCGTGTCGATATT
GCGTGTGGATACCGCCTAAGAGTGGAGACGACAGGCACGGGGCGTAGGGC
GGGAGACACGGAAGACAGTGGACAGAAAGACCGATGACAGGGAAAAATAG
GGAAAGAATAGTGTCGCATgatggaggcaggaagcGTCAGCAATCAAAAA
AATGTCACGTATCCACATGCTGCGCCGTGTGAACCTGGTCTCTTTGTGCT
GTCCAAACGCTTCCAACGGCGGACAGCTTGCAAATCTCAAATGCTTCCAC
CGATGGACAGCTTGAAAGATGTCCCTATCGTCATGCAGACTTTATCGTCA
ATGACAAGTGGAGATCAAGGTGTGCATAAGGAGAAGTTTGGGAGTCTAGA
GGCCCAGACACTGGATGAGTGAAGACGATGGTGACACCAGCTGATTTTGT
GCACATTTTTAAATCTTGAAAGAAACATTTTGATGGGAGGCAACTGGCAA
AGAGGCTTCTTTATTCCCTGTCCTCGTCCGAAAATTGACAGGGGTCTTTT
TTCATGCGTGGTCACTGTACCCCCTCCCCACTGTGTCTCTACTTATACAC
GCCCATGACCGTCTAAGAGACTCACGAGACCAAGTTTACCCGCCAAAGAG
GAGTTCAATGACGACTGTGACGATATTGAGGGCGATC
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Coding sequence (CDS) from alignment at CM002469.1:608240..610626+

>rna6835 ID=rna6835|Name=rna6835|organism=Nannochloropsis gaditana|type=CDS|length=1086bp|location=Sequence derived from alignment at CM002469.1:608240..610626+ (Nannochloropsis gaditana)
ATGCTTTGTGCTGATGGTGGCGTCTTTTCATCGCGATGCGCAAATTTTGG
TCTCATTACTGTTACTATCCGACCGTACAGATTATCACCGAGCGCTTTCT
GGATGAAGTGCGTATTTTCGACTTCCACCTTCCTTTTAAGCTGCACACTC
CTAGTCGTATCTCCTCGCTTCAATGATGCTTTCCTCCGTGGTGAGATGTC
CCCGAGGGAGCTTGCGACGGTCGTGGACCTCCCCAGTATATCGGTCAATG
TGaacgaggatggaggcgtcTCGGTGTCGACGCCCTGGGGTTCAGTAAAT
ACGGATAGCAACGGTACCAGCGTTCATGGTTTCACTCCCACGAGCATTGG
CAATGTGACGTGTGCGAATTTGGGTCCTTGGGATACGGCCGCGGAACCGA
CGTGCGAGACAGCCTTGCCAGCTTTCTACGAGTCGACCACCACCTTCGCC
GGGACTTCGAAACCGAAAATCCGAAAAATTACTATGGACACGTTCTGCAC
CACACCCTGCGGCGACACCTGGACCCGGGCCGTTTTTGCCCACAGCTTGC
GGTGTTCCCCTGGCGTAGGAGGGAACGGCTCGGCGGCCGGAGGAGTGGTT
GTCGACGTACCGGGAGCCGCGGTATCCACAGGACCGGGCGGAAATGTGGA
TGTACAGGCCCCTGGCACGACCGTGACAAGAGATCCGGGCACGGGTGCCG
TCCAGGTGGAGTtcccggggggaagggtgcaCGCGGGGAATGGGAGCGTT
GCGGTTACgtcggcggcctcccccgcccagaCAGCACGCACGTCGGCCGC
CACGACCTCAGGAGGGCCCACCTTCCCCGTGGATTATCCGGGCCTGCGCC
TGGGTTGCATCAAGGACcccaaggacgaggagttTTGCGCGGTGAAACGG
GCGGCAGTGCCGGGGGTAGGGGGAGACgcggaggacggaggccccGCTTG
CGATTTTTATCTCTCCTGCTGCTACGCCCAGTATGTGCAAACCTTTGGCA
GCGTGCCAACTGAAtttgtggaggaggtagaggcggcTTGCCCGGGTTCG
ACGTTGTTTTTGCAAGGCAGTGTCTGTACGGCGTAG
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Synonyms
Publications