rna6832, rna6832 (mRNA) Nannochloropsis gaditana

Overview
Namerna6832
Unique Namerna6832
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length596
Alignment locationCM002469.1:599603..600140 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100732g1.4463.mrna
Orig protein idgnl|cribi|Naga_100732g1.4463
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:599603..600140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100732g1gene6604Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6832rna6832-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23856.1cds6816Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6832 ID=rna6832|Name=rna6832|organism=Nannochloropsis gaditana|type=mRNA|length=596bp
TGGCCTTTATTTTTCAAGACTTTCATGGCTATTCTACTTCGCCGCAATCT
GATATCTATCTCATTCAATCCTCTGTCATCTTTTTTTCAATCGTTCCGCT
GAACAGTTCAACCTCCCGCCTCTTCCACACAGTAAATATGGTTTTTCGCC
CATGCATTGATCTTCATGCAGGAAAAGTGAAGCAGATCGTTGGTTCCTCT
TTGACTGGAAGCGATGCCGCCCTTGTGACAAACTTTGAGGCCACCATGAG
CGCAGAGGACTTTGCCAAAATGTACAAAGCGGATGATTTGAAGGGTGGGC
ACGTGATCATGTTGGGGGGCGGATGCGAAGAGGCGGCGTTGAAGGCGCTG
CGGGCATATCCGCAGGGCCTTCAAGTGGGGGGTGGGATCACCCCCCAAAA
CGCTCAGAAATTTCTAGAAGCAGGAGCTAGTCACGTCATTGTGACTTCTT
TTTTGTTCAACGGGTCGACGTTGGATTGGGCGCGGTTGAAAGAGATGGAG
GAAACGGTGGGGAAGGAACGACTGGTGCGTGAGAGGGAGGGAGGGAGGGA
GGGAGGGAGATTTGAAGCGGAGTGTAACGTAGCGATGGGCGTGTAA
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protein sequence of rna6832

>rna6832-protein ID=rna6832-protein|Name=rna6832|organism=Nannochloropsis gaditana|type=polypeptide|length=93bp
MPELKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNKCLGYIRWC
VELLRRGGVGQAQRVHLIPEIHSALSVISARRQGCKPGGESRW
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mRNA from alignment at CM002469.1:599603..600140+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6832 ID=rna6832|Name=rna6832|organism=Nannochloropsis gaditana|type=mRNA|length=538bp|location=Sequence derived from alignment at CM002469.1:599603..600140+ (Nannochloropsis gaditana)
ATGCCTGAGTTGAAGGTCGGAAACAGGGTCTGAGGGCAGGGGAATGCCGT
CCCTGGCCCCCGGGGAAACCTTGTCGACCCAATCCACGGAACTAGGtcct
tttttaatttttgaGATAGCACTCTAATGCTTCCAAGGCTTGGTTCCTCA
TGCGCGACTGTACTTTCTTTGACAGGAGGATCTGGTCACGCTCCTGGGGG
ACATCTCACCCGTACCCGTGACGTacgcgggaggagcgcggTCCATCGAG
GACTTAGAACGGGTGACTGAGCTGGGCAAGAACAAGGTGCGTGGTGTTTG
ACGGGTCGGGTGTGTCCTGCATGTTTGCGATGGTAATAAGGAAAGGCCCT
CCTTGAATACAGGTGGATTTGACGATAGGCAGTGCCTTGGATATATTCGG
TGGTGCGTTGAGCTACTCAGACGTGGTGGAGTGGGACAAGCGCAACGCGT
ACATTTGATACCAGAAATTCATTCTGCCCTCTCGGTAATATCTGCGCGGA
GACAAGGGTGTAAGCCCGGGGGAGAATCGCGCTGGTGA
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Coding sequence (CDS) from alignment at CM002469.1:599603..600140+

>rna6832 ID=rna6832|Name=rna6832|organism=Nannochloropsis gaditana|type=CDS|length=846bp|location=Sequence derived from alignment at CM002469.1:599603..600140+ (Nannochloropsis gaditana)
ATGCCTGAGTTGAAGGAGGATCTGGTCACGCTCCTGGGGGACATCTCACC
CGTACCCGTGACGTacgcgggaggagcgcggTCCATCGAGGACTTAGAAC
GGGTGACTGAGCTGGGCAAGAACAAGTGCCTTGGATATATTCGGTGGTGC
GTTGAGCTACTCAGACGTGGTGGAGTGGGACAAGCGCAACGCGTACATTT
GATACCAGAAATTCATTCTGCCCTCTCGGTAATATCTGCGCGGAGACAAG
GGTGTAAGCCCGGGGGAGAATCGCGCTGGTGAATGCCTGAGTTGAAGGAG
GATCTGGTCACGCTCCTGGGGGACATCTCACCCGTACCCGTGACGTacgc
gggaggagcgcggTCCATCGAGGACTTAGAACGGGTGACTGAGCTGGGCA
AGAACAAGTGCCTTGGATATATTCGGTGGTGCGTTGAGCTACTCAGACGT
GGTGGAGTGGGACAAGCGCAACGCGTACATTTGATACCAGAAATTCATTC
TGCCCTCTCGGTAATATCTGCGCGGAGACAAGGGTGTAAGCCCGGGGGAG
AATCGCGCTGGTGAATGCCTGAGTTGAAGGAGGATCTGGTCACGCTCCTG
GGGGACATCTCACCCGTACCCGTGACGTacgcgggaggagcgcggTCCAT
CGAGGACTTAGAACGGGTGACTGAGCTGGGCAAGAACAAGTGCCTTGGAT
ATATTCGGTGGTGCGTTGAGCTACTCAGACGTGGTGGAGTGGGACAAGCG
CAACGCGTACATTTGATACCAGAAATTCATTCTGCCCTCTCGGTAATATC
TGCGCGGAGACAAGGGTGTAAGCCCGGGGGAGAATCGCGCTGGTGA
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Synonyms
Publications