EWM23856.1, cds6816 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|585105130|gb|EWM23856.1| (hypothetical protein Naga_100732g1 [Nannochloropsis gaditana]) HSP 1 Score: 188.734 bits (478), Expect = 1.146e-60 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
Query: 1 MPELKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNKCLGYIRWCVELLRRGGVGQAQRVHLIPEIHSALSVISARRQGCKPGGESRW 93
MPELKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNKCLGYIRWCVELLRRGGVGQAQRVHLIPEIHSALSVISARRQGCKPGGESRW
Sbjct: 1 MPELKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNKCLGYIRWCVELLRRGGVGQAQRVHLIPEIHSALSVISARRQGCKPGGESRW 93
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1072231459|gb|OEU16191.1| (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 59.3066 bits (142), Expect = 2.457e-8 Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 0
Query: 6 EDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNK 42
EDLV LLG+ SP+PVTYAGG RSI+DLE V +LGK++
Sbjct: 227 EDLVQLLGEHSPIPVTYAGGVRSIDDLESVKKLGKDR 263
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1177846000|ref|WP_082872157.1| (hypothetical protein [Oleiphilus sp. HI0117]) HSP 1 Score: 55.4546 bits (132), Expect = 1.614e-7 Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 0
Query: 4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNK 42
+ EDLV+LLG+ISP+PVTYAGGARS EDL+ V +L K
Sbjct: 94 IDEDLVSLLGEISPIPVTYAGGARSFEDLKLVHQLSGGK 132
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1057263273|ref|WP_068633023.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Oleiphilus sp. HI0043] >gi|1024524123|gb|KZY39485.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Oleiphilus sp. HI0043]) HSP 1 Score: 55.8398 bits (133), Expect = 1.670e-7 Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0
Query: 4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNKC 43
+ EDLV+LLG+ISP+PVTYAGGARS EDL+ V +L K
Sbjct: 150 IDEDLVSLLGEISPIPVTYAGGARSFEDLKLVHQLSGGKV 189
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1024658750|gb|KZZ29261.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Oleiphilus sp. HI0081]) HSP 1 Score: 55.4546 bits (132), Expect = 1.955e-7 Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 0
Query: 4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNK 42
+ EDLV+LLG+ISP+PVTYAGGARS EDL+ V +L K
Sbjct: 114 IDEDLVSLLGEISPIPVTYAGGARSFEDLKLVHQLSGGK 152
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1057416439|ref|WP_068764533.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Oleiphilus sp. HI0068] >gi|1024579271|gb|KZY76091.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Oleiphilus sp. HI0068]) HSP 1 Score: 56.225 bits (134), Expect = 2.568e-7 Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 0
Query: 4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNKCLGYIRWCVELLRRGGVG 60
+ EDLV+LLG+ISP+PVTYAGGARS EDL+ V +L K I +++ GG G
Sbjct: 185 IDEDLVSLLGEISPIPVTYAGGARSFEDLKLVHQLSGGKVDLTIGSALDIF--GGAG 239
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1057120110|ref|WP_068515862.1| (MULTISPECIES: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus] >gi|1024507362|gb|KZY28188.1| hypothetical protein A3729_13950, partial [Oleiphilus sp. HI0043] >gi|1024531369|gb|KZY44036.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0050] >gi|1024546695|gb|KZY53344.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0061] >gi|1024579389|gb|KZY76174.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0069] >gi|1024596619|gb|KZY87544.1| hypothetical protein A3743_14085, partial [Oleiphilus sp. HI0072] >gi|1024662313|gb|KZZ31356.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0086] >gi|1024662499|gb|KZZ31468.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0085] >gi|1024698655|gb|KZZ54959.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0123] >gi|1024720991|gb|KZZ70474.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0128] >gi|1024727982|gb|KZZ74945.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0132]) HSP 1 Score: 55.8398 bits (133), Expect = 3.017e-7 Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 0
Query: 4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNK 42
+ EDLV+LLG+ISP+PVTYAGGARS EDL+ V +L K
Sbjct: 185 IDEDLVSLLGEISPIPVTYAGGARSFEDLKLVHQLSGGK 223
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1199274995|gb|OUS40170.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Oleispira antarctica]) HSP 1 Score: 55.8398 bits (133), Expect = 3.194e-7 Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0
Query: 4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNK 42
+ EDLVTLLG + +PVTYAGGARSI DL+RV EL K K
Sbjct: 172 IDEDLVTLLGQHASIPVTYAGGARSIADLKRVEELSKGK 210
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1199222137|gb|OUR89171.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Gammaproteobacteria bacterium 42_54_T18]) HSP 1 Score: 55.4546 bits (132), Expect = 5.283e-7 Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 0
Query: 4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNK 42
+ +DLVTLLGDI+ +PVTYAGGARSI+DL V +L K
Sbjct: 185 IDQDLVTLLGDIATIPVTYAGGARSIDDLALVNQLSNGK 223
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|933783304|ref|WP_054342279.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Neptunomonas antarctica]) HSP 1 Score: 55.4546 bits (132), Expect = 5.293e-7 Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 0
Query: 4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNKCLGYIRWCVELLRRGGV 59
+ +DLV LLG+IS +PVTYAGGARS+EDL++V++L K I +++ GV
Sbjct: 185 IDQDLVALLGEISTIPVTYAGGARSLEDLQQVSQLSAGKVDLTIGSALDIFGGNGV 240 The following BLAST results are available for this feature:
BLAST of EWM23856.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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