EWM23856.1, cds6816 (CDS) Nannochloropsis gaditana

Overview
NameEWM23856.1
Unique Namecds6816
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:599603..599617 +
Alignment locationCM002469.1:599778..599888 +
Alignment locationCM002469.1:599985..600140 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23856.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100732g1.4463.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:599603..599617 +
CM002469.1supercontigCM002469.1:599778..599888 +
CM002469.1supercontigCM002469.1:599985..600140 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR011060RibuloseP-bd_barrel
IPR013785Aldolase_TIM
Homology
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|585105130|gb|EWM23856.1| (hypothetical protein Naga_100732g1 [Nannochloropsis gaditana])

HSP 1 Score: 188.734 bits (478), Expect = 1.146e-60
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
Query:    1 MPELKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNKCLGYIRWCVELLRRGGVGQAQRVHLIPEIHSALSVISARRQGCKPGGESRW 93
            MPELKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNKCLGYIRWCVELLRRGGVGQAQRVHLIPEIHSALSVISARRQGCKPGGESRW
Sbjct:    1 MPELKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNKCLGYIRWCVELLRRGGVGQAQRVHLIPEIHSALSVISARRQGCKPGGESRW 93          
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1072231459|gb|OEU16191.1| (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 59.3066 bits (142), Expect = 2.457e-8
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 0
Query:    6 EDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNK 42
            EDLV LLG+ SP+PVTYAGG RSI+DLE V +LGK++
Sbjct:  227 EDLVQLLGEHSPIPVTYAGGVRSIDDLESVKKLGKDR 263          
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1177846000|ref|WP_082872157.1| (hypothetical protein [Oleiphilus sp. HI0117])

HSP 1 Score: 55.4546 bits (132), Expect = 1.614e-7
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 0
Query:    4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNK 42
            + EDLV+LLG+ISP+PVTYAGGARS EDL+ V +L   K
Sbjct:   94 IDEDLVSLLGEISPIPVTYAGGARSFEDLKLVHQLSGGK 132          
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1057263273|ref|WP_068633023.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Oleiphilus sp. HI0043] >gi|1024524123|gb|KZY39485.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Oleiphilus sp. HI0043])

HSP 1 Score: 55.8398 bits (133), Expect = 1.670e-7
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0
Query:    4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNKC 43
            + EDLV+LLG+ISP+PVTYAGGARS EDL+ V +L   K 
Sbjct:  150 IDEDLVSLLGEISPIPVTYAGGARSFEDLKLVHQLSGGKV 189          
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1024658750|gb|KZZ29261.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Oleiphilus sp. HI0081])

HSP 1 Score: 55.4546 bits (132), Expect = 1.955e-7
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 0
Query:    4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNK 42
            + EDLV+LLG+ISP+PVTYAGGARS EDL+ V +L   K
Sbjct:  114 IDEDLVSLLGEISPIPVTYAGGARSFEDLKLVHQLSGGK 152          
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1057416439|ref|WP_068764533.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Oleiphilus sp. HI0068] >gi|1024579271|gb|KZY76091.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Oleiphilus sp. HI0068])

HSP 1 Score: 56.225 bits (134), Expect = 2.568e-7
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 0
Query:    4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNKCLGYIRWCVELLRRGGVG 60
            + EDLV+LLG+ISP+PVTYAGGARS EDL+ V +L   K    I   +++   GG G
Sbjct:  185 IDEDLVSLLGEISPIPVTYAGGARSFEDLKLVHQLSGGKVDLTIGSALDIF--GGAG 239          
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1057120110|ref|WP_068515862.1| (MULTISPECIES: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus] >gi|1024507362|gb|KZY28188.1| hypothetical protein A3729_13950, partial [Oleiphilus sp. HI0043] >gi|1024531369|gb|KZY44036.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0050] >gi|1024546695|gb|KZY53344.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0061] >gi|1024579389|gb|KZY76174.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0069] >gi|1024596619|gb|KZY87544.1| hypothetical protein A3743_14085, partial [Oleiphilus sp. HI0072] >gi|1024662313|gb|KZZ31356.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0086] >gi|1024662499|gb|KZZ31468.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0085] >gi|1024698655|gb|KZZ54959.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0123] >gi|1024720991|gb|KZZ70474.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0128] >gi|1024727982|gb|KZZ74945.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Oleiphilus sp. HI0132])

HSP 1 Score: 55.8398 bits (133), Expect = 3.017e-7
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 0
Query:    4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNK 42
            + EDLV+LLG+ISP+PVTYAGGARS EDL+ V +L   K
Sbjct:  185 IDEDLVSLLGEISPIPVTYAGGARSFEDLKLVHQLSGGK 223          
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1199274995|gb|OUS40170.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Oleispira antarctica])

HSP 1 Score: 55.8398 bits (133), Expect = 3.194e-7
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0
Query:    4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNK 42
            + EDLVTLLG  + +PVTYAGGARSI DL+RV EL K K
Sbjct:  172 IDEDLVTLLGQHASIPVTYAGGARSIADLKRVEELSKGK 210          
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|1199222137|gb|OUR89171.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Gammaproteobacteria bacterium 42_54_T18])

HSP 1 Score: 55.4546 bits (132), Expect = 5.283e-7
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 0
Query:    4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNK 42
            + +DLVTLLGDI+ +PVTYAGGARSI+DL  V +L   K
Sbjct:  185 IDQDLVTLLGDIATIPVTYAGGARSIDDLALVNQLSNGK 223          
BLAST of EWM23856.1 vs. NCBI_GenBank
Match: gi|933783304|ref|WP_054342279.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Neptunomonas antarctica])

HSP 1 Score: 55.4546 bits (132), Expect = 5.293e-7
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 0
Query:    4 LKEDLVTLLGDISPVPVTYAGGARSIEDLERVTELGKNKCLGYIRWCVELLRRGGV 59
            + +DLV LLG+IS +PVTYAGGARS+EDL++V++L   K    I   +++    GV
Sbjct:  185 IDQDLVALLGEISTIPVTYAGGARSLEDLQQVSQLSAGKVDLTIGSALDIFGGNGV 240          
The following BLAST results are available for this feature:
BLAST of EWM23856.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105130|gb|EWM23856.1|1.146e-60100.00hypothetical protein Naga_100732g1 [Nannochloropsi... [more]
gi|1072231459|gb|OEU16191.1|2.457e-870.27Phosphoribosylformimino-5-aminoimidazole carboxami... [more]
gi|1177846000|ref|WP_082872157.1|1.614e-766.67hypothetical protein [Oleiphilus sp. HI0117][more]
gi|1057263273|ref|WP_068633023.1|1.670e-765.00phosphoribosylformimino-5-aminoimidazole carboxami... [more]
gi|1024658750|gb|KZZ29261.1|1.955e-766.67phosphoribosylformimino-5-aminoimidazole carboxami... [more]
gi|1057416439|ref|WP_068764533.1|2.568e-752.63phosphoribosylformimino-5-aminoimidazole carboxami... [more]
gi|1057120110|ref|WP_068515862.1|3.017e-766.67MULTISPECIES: phosphoribosylformimino-5-aminoimida... [more]
gi|1199274995|gb|OUS40170.1|3.194e-769.23phosphoribosylformimino-5-aminoimidazole carboxami... [more]
gi|1199222137|gb|OUR89171.1|5.283e-764.10phosphoribosylformimino-5-aminoimidazole carboxami... [more]
gi|933783304|ref|WP_054342279.1|5.293e-748.21phosphoribosylformimino-5-aminoimidazole carboxami... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6832rna6832Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications