rna6831, rna6831 (mRNA) Nannochloropsis gaditana

Overview
Namerna6831
Unique Namerna6831
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length463
Alignment locationCM002469.1:598098..598948 +

Link to JBrowse

Properties
Property NameValue
Productphosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
Orig transcript idgnl|cribi|Naga_100903g3.10562.mrna
Orig protein idgnl|cribi|Naga_100903g3.10562
GeneHIS4
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:598098..598948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
HIS4gene6603Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6831rna6831-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23859.1cds6815Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6831 ID=rna6831|Name=rna6831|organism=Nannochloropsis gaditana|type=mRNA|length=463bp
AGAGGTTCATATTCAACGAGGTCGTCTGAGTAGTCAAGGGGAACGTAAAG
TTTACGATTCTATAGCCACACAGGATGGCGACAACATCGGGTGAGACTGT
GCGTGTCGAGACTTTAAATTGAATGCCTATGTTGTTACGAGCCTCATCGG
TCCATTGTACCGACGCCCCCCAACTACCGAGCAGTCATTTCTCCGTCTGT
CCTTCCTATTCCAGCCCCCCTTCCTCCTTGAGCTTTTCCACTGACCGTCC
CTCTGTGGCATGTGCTCGTGCTCATGTGGCCATCGATTACCCCAACAGGC
CTCAACAGGAAAAGTACATGTGCAAAAGAAGAGGATGTTCTCCTACAGCA
CATCCTTTCCTTCTCCTCCGCCCCTCCTCCGCCCCCCGCAATGCCCCACG
ATGGGCGCCATTCCATGCATTCCAACGATAATTGTCCAACAGCCTCGACG
GACTTCGACTCGG
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protein sequence of rna6831

>rna6831-protein ID=rna6831-protein|Name=rna6831|organism=Nannochloropsis gaditana|type=polypeptide|length=152bp
MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADD
LKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHV
IVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRFEAECNVAM
GV
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mRNA from alignment at CM002469.1:598098..598948+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6831 ID=rna6831|Name=rna6831|organism=Nannochloropsis gaditana|type=mRNA|length=851bp|location=Sequence derived from alignment at CM002469.1:598098..598948+ (Nannochloropsis gaditana)
TGGCCTTTATTTTTCAAGACTTTCATGGCTATTCTACTTCGCCGCAATCT
GATATCTATCTCATTCAATCCTCTGTCATCTTTTTTTCAATCGTTCCGCT
GAACAGTtcaacctcccgcctcttccacACAGTAAATATGGTTTTTCGCC
CATGCATTGATCTTCATGCAGGAAAAGTGAAGCAGATCGTTGGTTCCTCT
TTGACTGGAAGCGATGCCGCCCTTGTGACAAACTTTGAGGCCACCATGAG
CGCAGAGGACTTTGCCAagtagggagagagaggacgcgggagggaaggtt
gGAGCGTAACATGTCGAGATGTGTCGAAGGGAACAACGAAAGCAAGTTGT
GCACATCCAAAGCCCGAAGAAAGACAGCGATAATTTTTGGGTTTTGACTG
AAAAGGAAGGCATTGCAGCATCTGGTGATGAGACATCCTTTAGCGGGCTA
GACCGTCATAAGTCGTTGAGGCCTCTAACGCGCCTAGCgaccctttctct
ccccacTTTTCCTTACCTGTCAGAATGTACAAAGCGGATGATTTGAAGGG
TGGGCACGTGATCATGTTGGGGGGCGGATGCGAAGAGGCGGCGTTGAAGG
CGCTGCGGGCATATCCGCAGGGCCTTCAAGTGGGGGGTGGGATCACCCCC
CAAAACGCTCAGAAATTTCTAGAAGCAGGAGCTAGTCACGTCATTGTGAC
TTCTTTTTTGTTCAACGGGTCGACGTTGGATTGGGCGCGGttgaaagaga
tggaggaaacggtggggaaggaacgaCTGGTgcgtgagagggagggaggg
agggagggagggagatttGAAGCGGAGTGTAACGTAGCGATGGGCGTGTA
A
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Coding sequence (CDS) from alignment at CM002469.1:598098..598948+

>rna6831 ID=rna6831|Name=rna6831|organism=Nannochloropsis gaditana|type=CDS|length=918bp|location=Sequence derived from alignment at CM002469.1:598098..598948+ (Nannochloropsis gaditana)
ATGGTTTTTCGCCCATGCATTGATCTTCATGCAGGAAAAGTGAAGCAGAT
CGTTGGTTCCTCTTTGACTGGAAGCGATGCCGCCCTTGTGACAAACTTTG
AGGCCACCATGAGCGCAGAGGACTTTGCCAaAATGTACAAAGCGGATGAT
TTGAAGGGTGGGCACGTGATCATGTTGGGGGGCGGATGCGAAGAGGCGGC
GTTGAAGGCGCTGCGGGCATATCCGCAGGGCCTTCAAGTGGGGGGTGGGA
TCACCCCCCAAAACGCTCAGAAATTTCTAGAAGCAGGAGCTAGTCACGTC
ATTGTGACTTCTTTTTTGTTCAACGGGTCGACGTTGGATTGGGCGCGGtt
gaaagagatggaggaaacggtggggaaggaacgaCTGGTgcgtgagaggg
agggagggagggagggagggagatttGAAGCGGAGTGTAACGTAGCGATG
GGCGTGTAAATGGTTTTTCGCCCATGCATTGATCTTCATGCAGGAAAAGT
GAAGCAGATCGTTGGTTCCTCTTTGACTGGAAGCGATGCCGCCCTTGTGA
CAAACTTTGAGGCCACCATGAGCGCAGAGGACTTTGCCAaAATGTACAAA
GCGGATGATTTGAAGGGTGGGCACGTGATCATGTTGGGGGGCGGATGCGA
AGAGGCGGCGTTGAAGGCGCTGCGGGCATATCCGCAGGGCCTTCAAGTGG
GGGGTGGGATCACCCCCCAAAACGCTCAGAAATTTCTAGAAGCAGGAGCT
AGTCACGTCATTGTGACTTCTTTTTTGTTCAACGGGTCGACGTTGGATTG
GGCGCGGttgaaagagatggaggaaacggtggggaaggaacgaCTGGTgc
gtgagagggagggagggagggagggagggagatttGAAGCGGAGTGTAAC
GTAGCGATGGGCGTGTAA
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Synonyms
Publications