EWM23859.1, cds6815 (CDS) Nannochloropsis gaditana

Overview
NameEWM23859.1
Unique Namecds6815
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:598235..598365 +
Alignment locationCM002469.1:598621..598948 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23859.1
Productphosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
Orig transcript idgnl|cribi|Naga_100903g3.10562.mrna
GeneHIS4
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:598235..598365 +
CM002469.1supercontigCM002469.1:598621..598948 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0008152metabolic process
GO:0000105histidine biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:00039491-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR011060RibuloseP-bd_barrel
IPR011858HisA_euk
IPR013785Aldolase_TIM
IPR006062His_biosynth
Homology
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|585105134|gb|EWM23859.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Nannochloropsis gaditana])

HSP 1 Score: 311.612 bits (797), Expect = 1.706e-107
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0
Query:    1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRFEAECNVAMGV 152
            MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRFEAECNVAMGV
Sbjct:    1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRFEAECNVAMGV 152          
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|553183326|ref|XP_005853876.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Nannochloropsis gaditana CCMP526] >gi|422295184|gb|EKU22483.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 266.159 bits (679), Expect = 8.092e-90
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0
Query:    1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERL 129
            MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERL
Sbjct:    1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERL 129          
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|298713160|emb|CBJ26916.1| (1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase [Ectocarpus siliculosus])

HSP 1 Score: 185.267 bits (469), Expect = 1.093e-55
Identity = 92/153 (60.13%), Postives = 112/153 (73.20%), Query Frame = 0
Query:    3 FRPCIDLHAGKVKQIVGSSLTGS---DAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLV-----REREGGREGGRFEAECN 147
            FRPCIDLH GKVKQIVGS+L+ +    + L TN+E T S+ DFAKMY+ D L+GGHVIMLGGGCEEAAL A++A+P GL VGGG+ P NA K+L+AGASHVIVTS++F    +DW RL+E+   VGK+RLV     R R GG E G F    N
Sbjct:   25 FRPCIDLHEGKVKQIVGSTLSATGERTSTLETNYETTKSSADFAKMYERDGLRGGHVIMLGGGCEEAALAAIKAFPGGLHVGGGVNPSNAMKYLDAGASHVIVTSYVFKDGEIDWERLEELRTAVGKDRLVLDLSCRRRPGGLERGDFLVVTN 177          
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|937111324|ref|WP_054550059.1| (MULTISPECIES: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus] >gi|1052513464|gb|OCX65001.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus sp. AR18-8])

HSP 1 Score: 171.014 bits (432), Expect = 1.423e-50
Identity = 83/142 (58.45%), Postives = 104/142 (73.24%), Query Frame = 0
Query:    1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRF 142
            M FRPCIDLH GKVKQIVGS+L  ++ A+V NF +   A  +A+M+  D L GGHVIMLG G EEAAL AL AYPQGLQ+GGGIT  NAQK+++AGASHVIVTS++F+   LD ARLK + + +GKE LV +       G++
Sbjct:    1 MEFRPCIDLHDGKVKQIVGSTLGYTNQAVVENFISQHDASHYAQMFAQDRLTGGHVIMLGSGNEEAALSALTAYPQGLQIGGGITADNAQKYIDAGASHVIVTSYIFHDGQLDLARLKRLNQLIGKEHLVIDLSCKMRDGKW 142          
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|860349013|ref|WP_048392137.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus sp. LK3] >gi|857264273|gb|KMN39768.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus sp. LK3])

HSP 1 Score: 171.014 bits (432), Expect = 1.519e-50
Identity = 83/142 (58.45%), Postives = 104/142 (73.24%), Query Frame = 0
Query:    1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRF 142
            M FRPCIDLH GKVKQIVGS+L  ++ A+V NF +   A  +A+M+  D L GGHVIMLG G EEAAL AL AYPQGLQ+GGGIT  NAQK+++AGASHVIVTS++F+   LD ARLK + + +GKE LV +       G++
Sbjct:    1 MEFRPCIDLHDGKVKQIVGSTLGYTNQAVVENFISQHDASHYAQMFAQDRLTGGHVIMLGSGNEEAALSALTAYPQGLQIGGGITADNAQKYIDAGASHVIVTSYIFHDGQLDLARLKRLNQLIGKEHLVIDLSCKMRDGKW 142          
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|490346842|ref|WP_004226824.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus fusiformis] >gi|298728901|gb|EFI69455.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus fusiformis ZC1] >gi|422946949|gb|EKU41351.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus fusiformis ZB2])

HSP 1 Score: 170.244 bits (430), Expect = 3.469e-50
Identity = 83/142 (58.45%), Postives = 104/142 (73.24%), Query Frame = 0
Query:    1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRF 142
            M FRPCIDLH GKVKQIVGS+L  ++ A+V NF +   A  +A+M+  D L GGHVIMLG G EEAAL AL AYPQGLQ+GGGIT  NAQK+++AGASHVIVTS++F+   LD ARLK + + +GKE LV +       G++
Sbjct:    1 MEFRPCIDLHDGKVKQIVGSTLGYTNQAVVENFISQHDASYYAQMFAQDRLTGGHVIMLGSGNEEAALSALTAYPQGLQIGGGITADNAQKYIDAGASHVIVTSYIFHDGQLDLARLKRLNQLIGKEHLVIDLSCKMRDGKW 142          
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|738118178|ref|WP_036076247.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus boronitolerans] >gi|704831392|gb|KGR87654.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108])

HSP 1 Score: 169.859 bits (429), Expect = 4.652e-50
Identity = 82/142 (57.75%), Postives = 104/142 (73.24%), Query Frame = 0
Query:    1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRF 142
            M FRPCIDLH GKVKQIVGS+L  ++ A+V NF +   A  +A+M+  D L GGHVIMLG G E+AAL AL AYPQGLQ+GGGIT  NAQK+++AGASHVIVTS++F+   LD ARLK + + +GKE LV +       G++
Sbjct:    1 MEFRPCIDLHDGKVKQIVGSTLGYTNQAVVENFISQHDASYYAQMFAQDRLTGGHVIMLGSGNEDAALSALTAYPQGLQIGGGITSDNAQKYIDAGASHVIVTSYIFHDGQLDLARLKHLNQLIGKEHLVIDLSCKMRDGKW 142          
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|1120442410|ref|WP_073304835.1| (MULTISPECIES: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Fibrobacter] >gi|1109880631|emb|SHK82636.1| 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [Fibrobacter sp. UWOS] >gi|1152143962|emb|SJZ53454.1| 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [Fibrobacter intestinalis])

HSP 1 Score: 168.318 bits (425), Expect = 1.672e-49
Identity = 82/129 (63.57%), Postives = 102/129 (79.07%), Query Frame = 0
Query:    2 VFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLV 130
            +FRPCID+H GKVKQIVG +L+ S+  L T+F +  S   FA +YK D LKGGHVIMLG GC EAA +AL+AYP GLQVGGGITP+NA++FL+AGASHVIVTS++FNG  LD  ++K +   VGKE+LV
Sbjct:    3 LFRPCIDIHQGKVKQIVGGTLSDSETPL-THFTSEHSPAYFAHLYKKDGLKGGHVIMLGKGCAEAAKEALQAYPNGLQVGGGITPENAKEFLDAGASHVIVTSWIFNGGKLDMEKVKALSFAVGKEKLV 130          
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|755127817|ref|WP_042478107.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Bacillus ndiopicus])

HSP 1 Score: 167.162 bits (422), Expect = 5.646e-49
Identity = 82/142 (57.75%), Postives = 103/142 (72.54%), Query Frame = 0
Query:    1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRF 142
            M FRPCIDLH GKVKQIVGS+L  ++  +V NF +   A  FA+M++ D L GGHVIMLG G E+AAL+AL+ YP  LQ+GGGIT QNA +F+EAGASHVIVTS++F+  TLD ARL E+   VGKE LV +       G++
Sbjct:    1 MEFRPCIDLHDGKVKQIVGSTLGYANKNVVENFVSEYDAGYFARMFQQDHLTGGHVIMLGSGNEDAALQALQTYPNALQIGGGITAQNAARFIEAGASHVIVTSYIFHDGTLDLARLNELVAVVGKEHLVIDLSCRSRAGKW 142          
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|1213238480|ref|WP_088639165.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Fibrobacter sp. UWB4] >gi|1212427647|gb|OWV19732.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Fibrobacter sp. UWB4])

HSP 1 Score: 167.162 bits (422), Expect = 6.309e-49
Identity = 85/137 (62.04%), Postives = 102/137 (74.45%), Query Frame = 0
Query:    3 FRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREG 139
            FRPCIDLH GKVKQIVGSSL+ S A L TNFE   S+  FA++YK D +KGGHVIMLG G E AA  AL AYP GLQVGGGI  QNA+++++AGASHVIVTS++F    LD +RL E+ +TVGKE L+ +    R G
Sbjct:    4 FRPCIDLHDGKVKQIVGSSLSDSGAGLKTNFETDRSSAWFAELYKRDGIKGGHVIMLGKGNESAAKDALSAYPGGLQVGGGINAQNAKEYIDAGASHVIVTSWIFPDGKLDRSRLDELVKTVGKEHLILDLSCKRTG 140          
The following BLAST results are available for this feature:
BLAST of EWM23859.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105134|gb|EWM23859.1|1.706e-107100.00phosphoribosylformimino-5-aminoimidazole carboxami... [more]
gi|553183326|ref|XP_005853876.1|8.092e-90100.00phosphoribosylformimino-5-aminoimidazole carboxami... [more]
gi|298713160|emb|CBJ26916.1|1.093e-5560.131-(5-phosphoribosyl)-5-((5-phosphoribosylamino)met... [more]
gi|937111324|ref|WP_054550059.1|1.423e-5058.45MULTISPECIES: phosphoribosylformimino-5-aminoimida... [more]
gi|860349013|ref|WP_048392137.1|1.519e-5058.45phosphoribosylformimino-5-aminoimidazole carboxami... [more]
gi|490346842|ref|WP_004226824.1|3.469e-5058.45phosphoribosylformimino-5-aminoimidazole carboxami... [more]
gi|738118178|ref|WP_036076247.1|4.652e-5057.75phosphoribosylformimino-5-aminoimidazole carboxami... [more]
gi|1120442410|ref|WP_073304835.1|1.672e-4963.57MULTISPECIES: phosphoribosylformimino-5-aminoimida... [more]
gi|755127817|ref|WP_042478107.1|5.646e-4957.75phosphoribosylformimino-5-aminoimidazole carboxami... [more]
gi|1213238480|ref|WP_088639165.1|6.309e-4962.04phosphoribosylformimino-5-aminoimidazole carboxami... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6831rna6831Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications