EWM23859.1, cds6815 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|585105134|gb|EWM23859.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Nannochloropsis gaditana]) HSP 1 Score: 311.612 bits (797), Expect = 1.706e-107 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0
Query: 1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRFEAECNVAMGV 152
MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRFEAECNVAMGV
Sbjct: 1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRFEAECNVAMGV 152
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|553183326|ref|XP_005853876.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Nannochloropsis gaditana CCMP526] >gi|422295184|gb|EKU22483.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 266.159 bits (679), Expect = 8.092e-90 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0
Query: 1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERL 129
MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERL
Sbjct: 1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERL 129
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|298713160|emb|CBJ26916.1| (1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase [Ectocarpus siliculosus]) HSP 1 Score: 185.267 bits (469), Expect = 1.093e-55 Identity = 92/153 (60.13%), Postives = 112/153 (73.20%), Query Frame = 0
Query: 3 FRPCIDLHAGKVKQIVGSSLTGS---DAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLV-----REREGGREGGRFEAECN 147
FRPCIDLH GKVKQIVGS+L+ + + L TN+E T S+ DFAKMY+ D L+GGHVIMLGGGCEEAAL A++A+P GL VGGG+ P NA K+L+AGASHVIVTS++F +DW RL+E+ VGK+RLV R R GG E G F N
Sbjct: 25 FRPCIDLHEGKVKQIVGSTLSATGERTSTLETNYETTKSSADFAKMYERDGLRGGHVIMLGGGCEEAALAAIKAFPGGLHVGGGVNPSNAMKYLDAGASHVIVTSYVFKDGEIDWERLEELRTAVGKDRLVLDLSCRRRPGGLERGDFLVVTN 177
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|937111324|ref|WP_054550059.1| (MULTISPECIES: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus] >gi|1052513464|gb|OCX65001.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus sp. AR18-8]) HSP 1 Score: 171.014 bits (432), Expect = 1.423e-50 Identity = 83/142 (58.45%), Postives = 104/142 (73.24%), Query Frame = 0
Query: 1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRF 142
M FRPCIDLH GKVKQIVGS+L ++ A+V NF + A +A+M+ D L GGHVIMLG G EEAAL AL AYPQGLQ+GGGIT NAQK+++AGASHVIVTS++F+ LD ARLK + + +GKE LV + G++
Sbjct: 1 MEFRPCIDLHDGKVKQIVGSTLGYTNQAVVENFISQHDASHYAQMFAQDRLTGGHVIMLGSGNEEAALSALTAYPQGLQIGGGITADNAQKYIDAGASHVIVTSYIFHDGQLDLARLKRLNQLIGKEHLVIDLSCKMRDGKW 142
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|860349013|ref|WP_048392137.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus sp. LK3] >gi|857264273|gb|KMN39768.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus sp. LK3]) HSP 1 Score: 171.014 bits (432), Expect = 1.519e-50 Identity = 83/142 (58.45%), Postives = 104/142 (73.24%), Query Frame = 0
Query: 1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRF 142
M FRPCIDLH GKVKQIVGS+L ++ A+V NF + A +A+M+ D L GGHVIMLG G EEAAL AL AYPQGLQ+GGGIT NAQK+++AGASHVIVTS++F+ LD ARLK + + +GKE LV + G++
Sbjct: 1 MEFRPCIDLHDGKVKQIVGSTLGYTNQAVVENFISQHDASHYAQMFAQDRLTGGHVIMLGSGNEEAALSALTAYPQGLQIGGGITADNAQKYIDAGASHVIVTSYIFHDGQLDLARLKRLNQLIGKEHLVIDLSCKMRDGKW 142
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|490346842|ref|WP_004226824.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus fusiformis] >gi|298728901|gb|EFI69455.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus fusiformis ZC1] >gi|422946949|gb|EKU41351.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus fusiformis ZB2]) HSP 1 Score: 170.244 bits (430), Expect = 3.469e-50 Identity = 83/142 (58.45%), Postives = 104/142 (73.24%), Query Frame = 0
Query: 1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRF 142
M FRPCIDLH GKVKQIVGS+L ++ A+V NF + A +A+M+ D L GGHVIMLG G EEAAL AL AYPQGLQ+GGGIT NAQK+++AGASHVIVTS++F+ LD ARLK + + +GKE LV + G++
Sbjct: 1 MEFRPCIDLHDGKVKQIVGSTLGYTNQAVVENFISQHDASYYAQMFAQDRLTGGHVIMLGSGNEEAALSALTAYPQGLQIGGGITADNAQKYIDAGASHVIVTSYIFHDGQLDLARLKRLNQLIGKEHLVIDLSCKMRDGKW 142
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|738118178|ref|WP_036076247.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus boronitolerans] >gi|704831392|gb|KGR87654.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108]) HSP 1 Score: 169.859 bits (429), Expect = 4.652e-50 Identity = 82/142 (57.75%), Postives = 104/142 (73.24%), Query Frame = 0
Query: 1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRF 142
M FRPCIDLH GKVKQIVGS+L ++ A+V NF + A +A+M+ D L GGHVIMLG G E+AAL AL AYPQGLQ+GGGIT NAQK+++AGASHVIVTS++F+ LD ARLK + + +GKE LV + G++
Sbjct: 1 MEFRPCIDLHDGKVKQIVGSTLGYTNQAVVENFISQHDASYYAQMFAQDRLTGGHVIMLGSGNEDAALSALTAYPQGLQIGGGITSDNAQKYIDAGASHVIVTSYIFHDGQLDLARLKHLNQLIGKEHLVIDLSCKMRDGKW 142
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|1120442410|ref|WP_073304835.1| (MULTISPECIES: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Fibrobacter] >gi|1109880631|emb|SHK82636.1| 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [Fibrobacter sp. UWOS] >gi|1152143962|emb|SJZ53454.1| 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [Fibrobacter intestinalis]) HSP 1 Score: 168.318 bits (425), Expect = 1.672e-49 Identity = 82/129 (63.57%), Postives = 102/129 (79.07%), Query Frame = 0
Query: 2 VFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLV 130
+FRPCID+H GKVKQIVG +L+ S+ L T+F + S FA +YK D LKGGHVIMLG GC EAA +AL+AYP GLQVGGGITP+NA++FL+AGASHVIVTS++FNG LD ++K + VGKE+LV
Sbjct: 3 LFRPCIDIHQGKVKQIVGGTLSDSETPL-THFTSEHSPAYFAHLYKKDGLKGGHVIMLGKGCAEAAKEALQAYPNGLQVGGGITPENAKEFLDAGASHVIVTSWIFNGGKLDMEKVKALSFAVGKEKLV 130
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|755127817|ref|WP_042478107.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Bacillus ndiopicus]) HSP 1 Score: 167.162 bits (422), Expect = 5.646e-49 Identity = 82/142 (57.75%), Postives = 103/142 (72.54%), Query Frame = 0
Query: 1 MVFRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREGGRF 142
M FRPCIDLH GKVKQIVGS+L ++ +V NF + A FA+M++ D L GGHVIMLG G E+AAL+AL+ YP LQ+GGGIT QNA +F+EAGASHVIVTS++F+ TLD ARL E+ VGKE LV + G++
Sbjct: 1 MEFRPCIDLHDGKVKQIVGSTLGYANKNVVENFVSEYDAGYFARMFQQDHLTGGHVIMLGSGNEDAALQALQTYPNALQIGGGITAQNAARFIEAGASHVIVTSYIFHDGTLDLARLNELVAVVGKEHLVIDLSCRSRAGKW 142
BLAST of EWM23859.1 vs. NCBI_GenBank
Match: gi|1213238480|ref|WP_088639165.1| (phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Fibrobacter sp. UWB4] >gi|1212427647|gb|OWV19732.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Fibrobacter sp. UWB4]) HSP 1 Score: 167.162 bits (422), Expect = 6.309e-49 Identity = 85/137 (62.04%), Postives = 102/137 (74.45%), Query Frame = 0
Query: 3 FRPCIDLHAGKVKQIVGSSLTGSDAALVTNFEATMSAEDFAKMYKADDLKGGHVIMLGGGCEEAALKALRAYPQGLQVGGGITPQNAQKFLEAGASHVIVTSFLFNGSTLDWARLKEMEETVGKERLVREREGGREG 139
FRPCIDLH GKVKQIVGSSL+ S A L TNFE S+ FA++YK D +KGGHVIMLG G E AA AL AYP GLQVGGGI QNA+++++AGASHVIVTS++F LD +RL E+ +TVGKE L+ + R G
Sbjct: 4 FRPCIDLHDGKVKQIVGSSLSDSGAGLKTNFETDRSSAWFAELYKRDGIKGGHVIMLGKGNESAAKDALSAYPGGLQVGGGINAQNAKEYIDAGASHVIVTSWIFPDGKLDRSRLDELVKTVGKEHLILDLSCKRTG 140 The following BLAST results are available for this feature:
BLAST of EWM23859.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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