rna6819, rna6819 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6819
Unique Name	rna6819
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3447
Alignment location	CM002469.1:576531..577775 +

Link to JBrowse

Properties


Property Name	Value
Product	mad2 mitotic arrest deficient-like 2
Orig transcript id	gnl\|cribi\|Naga_100202g9.188.mrna
Orig protein id	gnl\|cribi\|Naga_100202g9.188
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:576531..577775 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100202g9	gene6592	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6819	rna6819-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23863.1	cds6803	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:576531..577775+
coding sequence from alignment at CM002469.1:576531..577775+

mRNA sequence

>rna6819 ID=rna6819|Name=rna6819|organism=Nannochloropsis gaditana|type=mRNA|length=3447bp
AAGAACAGACTAACAGTAGGAAATGTGGCCAACTGTGAGGACTGGAGCCA
AGGCTTCTCCCAGCGATTCTTTCAGCACGTCAATGGATTTGAGCGACAGA
AGCAGCGGCAGTGCAAGCGATTGCGGTATCGACAACAGCACGAGCACCAG
GACGAGCAGTAGCAGCAGCATCTCATCAACGTCATCTCGTGGCTTGCTAC
AGTCTATTTTCCCATCCTTTTTAGGTCTTTTACCGCAACTTAGCTCCTAC
AGTGCTGGGGCAGGTGCGAAAGGCACCTTTAAGCCGATAAAAGAACACAC
GGGCAACAAACGGGTATCCCTCCACCGCTATTCCCAAGCCACTCTCGCCA
CAGGCATTACGCGTGCGGCTGTAGCTTGTCCTCCGACCGAAGATCCGAAC
GAATGGCTGGCTGTGCATACAGTGGATGCGTACAATGAACTCGCTCTGTT
GTACGGGGTCATCCACGCGAAGTGCTCACCTTCCAAAGAGAGCTGCTCGG
TCATGAACGCGGGCCCGGAGTTCGAATATCTATGGGCGGACAGCGATCTC
CACAAGAAACCCACCAAGGTATCTGCCAAGGACTACGTGAATTTGCTGTT
GTCATGGGTGGAAAAGCAGCTGCATGATCCGGCGGTTTTTCCGCCATCGA
CAAACATCGCCTTCCCTCGGACTTTTAAGGTGACGGTGGCCAAGATCTTC
ACGCGTTTGTTTCGGGTTTATGGACACATCTACCTTGTGCACGCGCAGGA
CGTGGAACAAGCGGGGGCTATGAGTCACCTCAATTCTTGCTTTAAGCACT
TCATCTTCTGCGTCCTGGAGTTCGACCTAGTAGAGGACCGGGAACTCGTC
CCCCTGCACCTCTTGATCCGCAACATTGTCGCAGAAGACACGCGGAAGCA
AGCAGCAGCCCGACCCTCCATCCCTGCTGTCTCATCCTCGTCGGCTAACA
GAGGGCTGGGATGGGGCAGGCCCTGCCAAGCCGCGGTGTCGGCCTCACAT
TCACCGCACCAGGCGAGAATGCAGCGCCTGCGTAGCAACAGTGGCCACAG
CACCAACAGCTGTAACTTGAGACCAGCAAACAGCGCTCAAAAACCGATGC
CCTCGACCCGACAGGAACGATCGTCATTTCCGTCTCCGTTATTCCCTTCT
TCACCCTCACCTTCCACCTCCTCCTCTTTTTCCTCTCCCAGCACCTCCAC
TCTGTCCCCCACATTGGCATCCAGACCGCCAAGAGAAGAGCACCGCATGC
CGCGCACTAATAGCACTGGCACTGATGGCGGGCACTGCAGCACCAGGCAC
CGCATAAGCCCGCACGGACACAAGGGCAAAGAACCGAGAGCGGGGCCACG
AAAGTTGCTTGTAGGGAAGCCGCATGACGCCCTAACCCCGGTCAAACTTT
AGAATGTGAATTTTGATTTGCAGGCCCACAAAAGCAATTTGAAAACGATG
ATGCGTGTTCATCAACGAACGGGAAACTAGAAGGCCGATTGGACAACTTT
TTTTGCGCCCACCGAAATCTTCGTACCACCCACATCCTACGTGTTCATAT
TTGTTTTCTTCCGATCGAAATCACGCATGGCTTACCAAAATGTAAGCAGG
CACACAAAGTCTTTTCAGCTTTGTCCACCATGAAGTCGAATGCAAGAGTC
GAATACCTTGTATTATGCCCCCCGGTCCGTTCCCACATATCCCCCATCAA
CCACATTTCCCCCCCCCCCAAATGTCTTAAATATAAAAGTGCCACAACAT
TTTTCAATGCTTGATTGTCCGAGGTCATATCAGATGTGGAGGAAACCCTG
TTTCGTGTAGTTCACACCCGTGGTCCGCGCGTGAAAGGGACAAGAGGGTC
CTCTACGCGTCGCCAGCGGCTCGACCCATCTTTCTCTTAGTACACGTACT
TTAAAGTCAGATACGTCAAACACTAATCAACAAGGTTGCCGTGAATATGT
CTGTATTCACTTTAAGTATAGCGCAGAGCCTCTACGTTCTGTTGCTTGAT
TTGGAACAAAAAACCACAGACGAACAGGAACACTTCTCGTCCTTTGGGAG
TCTTTTCCTCGGAACTTACAAAAACTGTAAATTGAAAGCACACGGTTCTG
TTTCCAGAAGCAAATCTTACGCCGGTGGAAAGACATGGGTAGTGGTCACA
TTGACAGTGTCGAAGGTCTGTTCTTCCAGTGTGCTTCCATTGTGAAGAGC
CCACCGCCCGAGTTTTCCCATGTGACGTTGACGGAGGAGCAGCAGTTGCA
TCTATATGCCCGTTACAAACAGGGTTATGAGGGGGATAACGTCACACCTT
GCCCGGGGCTCTTAGACTTTGTCGCGCGGGCGAAATGGTCAGTTCATGGG
TTGCATACAGTTGCGAAGGGTGTATGCTGAAGCTTTCTTATTACGTGCGT
ATGCGCGGTCGCACTGAGAGGTGTATGCTGAAGCTTTCTTGTTACCTGCG
TATGCGCGGTCGCACTGACGAGACTGGGTAACCTTCGGTGGCCTTTGAGA
AGCCAGCAGTCCATTTTCAAGGATTGAGCTTCCGATCATTTATCCCACAG
GAAGGCGTGGAAGGCATTGATGGGAATGGATGCGCTCCAAGCACAGTCCG
AATACATCGATTGCGTACAGGCCTGGTTCAAGGAGCAAAGCCCCGAAATG
GGCTGCCATGCTAGTGAGGGCTTAAAGCAGACCAAGATAACGTCGCGCTT
TCAATCACACAGGGATTCGCGTGCGAACGAGCATGTTGATGACACCCTCT
TATTGGGAAGCGCGCCTTTCCGGGGGATAGGGGTTATCGGTCGAGAGGGC
CTCAACAGTGGGTGTGTTGACAGTCCGGATAGGACCAGTGAGGAGAGGGA
AGGAGACAAGAGGGATGCGGCGAATGAGCACGAAGACATTTTCTCCTGGG
CCAAGGAGGGCTTCGTGGACAAAGTGCTCGCCTGGTTGGATGGTGAGAAC
GAGCCGGCGGAAGGGGGAGAGATCGGGCCACTTCCACGACACGTGGATAC
TAGAGATGAGGAGGGTCGGACCCTGTTGCATTGGGCTGTGGATGGAAATC
ATGGGGCGCTTGTCAAAGTACTGCTGGCGCGGGGAGCGGACGTGACTGCG
ACGGATAAGGAGGGAGATACCTGCTTGGATTATGCTCGATTATGTGAACA
CAAAGAGCTCGTTGAACTGTTGGTAGAGAGGGAAGCGATAACACAGGAAA
GGAAAACGAAGGAGACATCATGGTGTCAGGAATAGGGGAAACGATGGAAA
CGGGGTTGTATTGACATTAACAAAGAATTGACATGACGCTTCTTCAAATC
TTGTGGATGTGGCAACAGTGTAGTACTAACGCATCTGTTGATGAGCTCTG
TGAGGCCAAACTAGCTTGGGGGGTAATAAATGGGCCATTCAGATACGAGG
AAATATCCTGGTTTTTAAGATATAAATCTGAAATATACCTGACTGTG

protein sequence of rna6819

>rna6819-protein ID=rna6819-protein|Name=rna6819|organism=Nannochloropsis gaditana|type=polypeptide|length=159bp
MKNNGPLQEATAVLLEFLEVAVHQVLYNRGVYPPAIFERRRKYDVPVFMS
RHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAF
ELASSPTLIRALAVGGLDDPFPAFRKLLARLSVAEVRDGVCSPPLVMTTH
AFPSRQCLN

mRNA from alignment at CM002469.1:576531..577775+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6819 ID=rna6819|Name=rna6819|organism=Nannochloropsis gaditana|type=mRNA|length=1245bp|location=Sequence derived from alignment at CM002469.1:576531..577775+ (Nannochloropsis gaditana)
ACAGAGCTCTTATGAAGAATAATGGACCATTGCAGGAAGCTACTGCCGTG
CTACTCGAATTTTTGGAGGTAGCAGTACACCAAGTCCTGTAAGTCCTGGC
CCGAACGCTCTCAAACCTCTTCCCCTTACATCAAGCACTTCTTGTCCGCA
TTTTGCCTTCATCAAATTAAAATCACaattcttttcttcattcCCGAGCC
ATCATTTATCAAACATCCCTGAACTGGTTtgtttctttccctttaCCTCC
CACCCACTCGTACCTCTTCTTGGCACAGGTACAACCGTGGGGTGTATCCC
CCCGCAATCTTCGAACGCCGAAGGAAGTATGACGTACCTGTCTTTATGAG
CCGACATCCGGACCTCAACCTTTACATACACGAGGTCCTCCATGCAGCGG
GGGCCATGTTTATGGAAGGGTCCGTGGACAAGGTCATAGTGACTCTGTAC
GGTAGCAGGTAGGTCGCACGGCGACGAATGAAACGAACAGAATTCCTTAA
ACGACAGGTTGGAAGGCATTGTATTGTGACGCACAACCGAGAGGGCATGC
CTTCCTGACACTGGCTTCCAAGACATAGAGTTGTGCGAGCATCCCTGTTG
ATGCCAGgcctcctacctccctcaactccctccctccgcccccatgCGGA
TGCCTCCATCGTCAAAGCCACTATTTTATCGTCCTTGCACGAGCCACCAT
TTGTCTTCCATGCCACAACTTTGGACTCACCTCGTACCCCTCCCCACGGG
GCATGACGCCACAGGAGCGATCAGGAGGGACACGCGCCCTTGGAATCATT
CGCTTTCgagctcgcctcctctcccacgctTATCCGTGCCTTGGCTGTCG
GGGGCTTGGACgacccctttcccgcctttcgGAAGCTGCTCGCCCGCCTT
AGCGTTGCCGAGGTACGGGACGGGGtctgctccccccctctcgtgATGAC
AACACATGCGTTCCCGAGTCGGCAGTGCCTAAACTGACTCATTTACACTC
AAGCCCCCTTCGTCAAAGACTCGTGCCATACTCTTGGCTATGTTCCATCT
GGAAAATGTCCTCGTTcatccgtttcctcctcccatctctcctgtccttc
ctccttccctccctcattccctccctcccttcctccctcaggaggTTGCC
GagctccagcccctcccctctgatGTAACGTTCGCCCTCCTGCTTTCCAC
CCGGCCGCAGGTGCGACCtgacaaggaaggaagggagggctggag

Coding sequence (CDS) from alignment at CM002469.1:576531..577775+

>rna6819 ID=rna6819|Name=rna6819|organism=Nannochloropsis gaditana|type=CDS|length=1440bp|location=Sequence derived from alignment at CM002469.1:576531..577775+ (Nannochloropsis gaditana)
ATGAAGAATAATGGACCATTGCAGGAAGCTACTGCCGTGCTACTCGAATT
TTTGGAGGTAGCAGTACACCAAGTCCTGTACAACCGTGGGGTGTATCCCC
CCGCAATCTTCGAACGCCGAAGGAAGTATGACGTACCTGTCTTTATGAGC
CGACATCCGGACCTCAACCTTTACATACACGAGGTCCTCCATGCAGCGGG
GGCCATGTTTATGGAAGGGTCCGTGGACAAGGTCATAGTGACTCTGTACG
GTAGCAGGAGCGATCAGGAGGGACACGCGCCCTTGGAATCATTCGCTTTC
gagctcgcctcctctcccacgctTATCCGTGCCTTGGCTGTCGGGGGCTT
GGACgacccctttcccgcctttcgGAAGCTGCTCGCCCGCCTTAGCGTTG
CCGAGGTACGGGACGGGGtctgctccccccctctcgtgATGACAACACAT
GCGTTCCCGAGTCGGCAGTGCCTAAACTGAATGAAGAATAATGGACCATT
GCAGGAAGCTACTGCCGTGCTACTCGAATTTTTGGAGGTAGCAGTACACC
AAGTCCTGTACAACCGTGGGGTGTATCCCCCCGCAATCTTCGAACGCCGA
AGGAAGTATGACGTACCTGTCTTTATGAGCCGACATCCGGACCTCAACCT
TTACATACACGAGGTCCTCCATGCAGCGGGGGCCATGTTTATGGAAGGGT
CCGTGGACAAGGTCATAGTGACTCTGTACGGTAGCAGGAGCGATCAGGAG
GGACACGCGCCCTTGGAATCATTCGCTTTCgagctcgcctcctctcccac
gctTATCCGTGCCTTGGCTGTCGGGGGCTTGGACgacccctttcccgcct
ttcgGAAGCTGCTCGCCCGCCTTAGCGTTGCCGAGGTACGGGACGGGGtc
tgctccccccctctcgtgATGACAACACATGCGTTCCCGAGTCGGCAGTG
CCTAAACTGAATGAAGAATAATGGACCATTGCAGGAAGCTACTGCCGTGC
TACTCGAATTTTTGGAGGTAGCAGTACACCAAGTCCTGTACAACCGTGGG
GTGTATCCCCCCGCAATCTTCGAACGCCGAAGGAAGTATGACGTACCTGT
CTTTATGAGCCGACATCCGGACCTCAACCTTTACATACACGAGGTCCTCC
ATGCAGCGGGGGCCATGTTTATGGAAGGGTCCGTGGACAAGGTCATAGTG
ACTCTGTACGGTAGCAGGAGCGATCAGGAGGGACACGCGCCCTTGGAATC
ATTCGCTTTCgagctcgcctcctctcccacgctTATCCGTGCCTTGGCTG
TCGGGGGCTTGGACgacccctttcccgcctttcgGAAGCTGCTCGCCCGC
CTTAGCGTTGCCGAGGTACGGGACGGGGtctgctccccccctctcgtgAT
GACAACACATGCGTTCCCGAGTCGGCAGTGCCTAAACTGA

Synonyms

Publications