EWM23863.1, cds6803 (CDS) Nannochloropsis gaditana

Overview
NameEWM23863.1
Unique Namecds6803
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:576542..576618 +
Alignment locationCM002469.1:576809..576988 +
Alignment locationCM002469.1:577295..577517 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23863.1
Productmad2 mitotic arrest deficient-like 2
Orig transcript idgnl|cribi|Naga_100202g9.188.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:576542..576618 +
CM002469.1supercontigCM002469.1:576809..576988 +
CM002469.1supercontigCM002469.1:577295..577517 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016049cell growth
GO:0030154cell differentiation
GO:0016043cellular component organization
GO:0065009regulation of molecular function
GO:0006950response to stress
GO:0007049cell cycle
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0007267cell-cell signaling
GO:0006464cellular protein modification process
GO:0007275multicellular organism development
GO:0007165signal transduction
GO:0009056catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005856cytoskeleton
GO:0005654nucleoplasm
GO:0005730nucleolus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR003511HORMA_DNA-bd
Homology
BLAST of EWM23863.1 vs. NCBI_GenBank
Match: gi|585105139|gb|EWM23863.1| (mad2 mitotic arrest deficient-like 2 [Nannochloropsis gaditana])

HSP 1 Score: 326.635 bits (836), Expect = 2.892e-113
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
Query:    1 MKNNGPLQEATAVLLEFLEVAVHQVLYNRGVYPPAIFERRRKYDVPVFMSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTLIRALAVGGLDDPFPAFRKLLARLSVAEVRDGVCSPPLVMTTHAFPSRQCLN 159
            MKNNGPLQEATAVLLEFLEVAVHQVLYNRGVYPPAIFERRRKYDVPVFMSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTLIRALAVGGLDDPFPAFRKLLARLSVAEVRDGVCSPPLVMTTHAFPSRQCLN
Sbjct:    1 MKNNGPLQEATAVLLEFLEVAVHQVLYNRGVYPPAIFERRRKYDVPVFMSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTLIRALAVGGLDDPFPAFRKLLARLSVAEVRDGVCSPPLVMTTHAFPSRQCLN 159          
BLAST of EWM23863.1 vs. NCBI_GenBank
Match: gi|553189851|ref|XP_005855085.1| (mad2 mitotic arrest deficient-like 2, partial [Nannochloropsis gaditana CCMP526] >gi|422293969|gb|EKU21269.1| mad2 mitotic arrest deficient-like 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 176.792 bits (447), Expect = 1.089e-54
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
Query:   49 MSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTLIRALAVGGLDDPFPAFRKLLARLSVAE 135
            MSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTLIRALAVGGLDDPFPAFRKLLARLSVAE
Sbjct:    1 MSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTLIRALAVGGLDDPFPAFRKLLARLSVAE 87          
BLAST of EWM23863.1 vs. NCBI_GenBank
Match: gi|58865782|ref|NP_001012106.1| (mitotic spindle assembly checkpoint protein MAD2B [Rattus norvegicus] >gi|564354077|ref|XP_006239452.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2B isoform X1 [Rattus norvegicus] >gi|672054511|ref|XP_008762478.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2B isoform X1 [Rattus norvegicus] >gi|56388614|gb|AAH87687.1| MAD2 mitotic arrest deficient-like 2 (yeast) [Rattus norvegicus])

HSP 1 Score: 99.3673 bits (246), Expect = 9.409e-23
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 0
Query:    8 QEATAVLLEFLEVAVHQVLYNRGVYPPAIFERRRKYDVPVFMSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTLIRALAVGGLDD 119
            Q    VL EFLEVAVH +LY R VYP  IF++R+KY+VPV MS HP+LN YI + LH    +  +  V+KV+V +     D+E H P+E F FE+   P L  ++ +GGL  
Sbjct:   13 QVVADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVVVIL----DKE-HRPVEKFVFEITQPPLL--SIKLGGLKQ 117          
BLAST of EWM23863.1 vs. NCBI_GenBank
Match: gi|1188111758|ref|XP_020778086.1| (mitotic spindle assembly checkpoint protein MAD2B [Boleophthalmus pectinirostris])

HSP 1 Score: 98.5969 bits (244), Expect = 9.962e-23
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 0
Query:   13 VLLEFLEVAVHQVLYNRGVYPPAIFERRRKYDVPVFMSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTLIRALAVGGLDDPFPAFRKLLARLSVAE 135
            +L EFLEVA+H +LY R VYP  IF++RRKY+VPV MS HPDLN YI + L+    +  +   +KV+V +       +GH P+E F FE+ S PTL+   +   L       R  + ++SV +
Sbjct:   18 ILCEFLEVAIHLILYVREVYPSGIFQKRRKYNVPVQMSCHPDLNQYIQDTLYCIKPLIEKNEAEKVVVVIMD-----KGHHPVERFVFEI-SQPTLLSISSETLLSHVEQLLRAFILKISVCD 134          
BLAST of EWM23863.1 vs. NCBI_GenBank
Match: gi|1012171525|ref|XP_016004900.1| (PREDICTED: mitotic spindle assembly checkpoint protein MAD2B-like [Rousettus aegyptiacus] >gi|1012171529|ref|XP_016004901.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2B-like [Rousettus aegyptiacus] >gi|1012171533|ref|XP_016004902.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2B-like [Rousettus aegyptiacus] >gi|1012171537|ref|XP_016004903.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2B-like [Rousettus aegyptiacus])

HSP 1 Score: 96.2857 bits (238), Expect = 1.078e-22
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 0
Query:    8 QEATAVLLEFLEVAVHQVLYNRGVYPPAIFERRRKYDVPVFMSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTL 108
            Q    VL EFLEVAVH +LY R VYP  IF++R+KY+VPV MS HP+LN YI + LH    +  +  V+KV+V +     D+E H P+E F FE+   P L
Sbjct:   13 QVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVVVIL----DKE-HRPVEKFVFEITQPPLL 108          
BLAST of EWM23863.1 vs. NCBI_GenBank
Match: gi|929228863|ref|XP_013990912.1| (PREDICTED: mitotic spindle assembly checkpoint protein MAD2B [Salmo salar] >gi|929228865|ref|XP_013990913.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2B [Salmo salar])

HSP 1 Score: 96.6709 bits (239), Expect = 5.292e-22
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 0
Query:    8 QEATAVLLEFLEVAVHQVLYNRGVYPPAIFERRRKYDVPVFMSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTL 108
            Q    +L EFLEVA+H +LY R VYP  IF++R+KY+VPV MS HP+LN YIH+ LH    +  +   +KV+V +     D+E H P+E F FE++  P L
Sbjct:   13 QVVADILCEFLEVAIHLILYVREVYPSGIFQKRKKYNVPVQMSCHPELNQYIHDTLHCVKPLIEKNDAEKVVVVIM----DKEHH-PVERFVFEISQPPLL 108          
BLAST of EWM23863.1 vs. NCBI_GenBank
Match: gi|642068123|emb|CDQ89254.1| (unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 96.6709 bits (239), Expect = 5.348e-22
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 0
Query:    8 QEATAVLLEFLEVAVHQVLYNRGVYPPAIFERRRKYDVPVFMSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTL 108
            Q    +L EFLEVA+H +LY R VYP  IF++R+KY+VPV MS HP+LN YIH+ LH    +  +   +KV+V +     D+E H P+E F FE++  P L
Sbjct:   13 QVVADILCEFLEVAIHLILYVREVYPSGIFQKRKKYNVPVQMSCHPELNQYIHDTLHCVKPLIEKNDAEKVVVVIM----DKEHH-PVERFVFEISQPPLL 108          
BLAST of EWM23863.1 vs. NCBI_GenBank
Match: gi|4835900|gb|AAD30290.1|AF139365_1 (Mad2B protein [Homo sapiens])

HSP 1 Score: 96.6709 bits (239), Expect = 6.016e-22
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0
Query:    8 QEATAVLLEFLEVAVHQVLYNRGVYPPAIFERRRKYDVPVFMSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSP 106
            Q   AVL EFLEVAVH +LY R VYP  IF++R+KY+VPV MS HP+LN YI + LH    +  +  V+KV+V +     D+E H P+E F FE+   P
Sbjct:   13 QVVAAVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVVVIL----DKE-HRPVEKFVFEITQPP 106          
BLAST of EWM23863.1 vs. NCBI_GenBank
Match: gi|568931920|ref|XP_006539252.1| (PREDICTED: mitotic spindle assembly checkpoint protein MAD2B isoform X3 [Mus musculus])

HSP 1 Score: 95.9005 bits (237), Expect = 6.176e-22
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 0
Query:    8 QEATAVLLEFLEVAVHQVLYNRGVYPPAIFERRRKYDVPVFMSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTL 108
            Q    VL EFLEVAVH +LY R VYP  IF++R+KY+VPV MS HP+LN YI + LH    +  +  V+KV+V +     D+E H P+E F FE+   P L
Sbjct:   13 QVVADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVVVIL----DKE-HRPVEKFVFEITQPPLL 108          
BLAST of EWM23863.1 vs. NCBI_GenBank
Match: gi|1025125617|ref|XP_016350628.1| (PREDICTED: mitotic spindle assembly checkpoint protein MAD2B [Sinocyclocheilus anshuiensis])

HSP 1 Score: 96.6709 bits (239), Expect = 6.831e-22
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = 0
Query:    8 QEATAVLLEFLEVAVHQVLYNRGVYPPAIFERRRKYDVPVFMSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTL 108
            Q    +L EFLEVA+H +LY R VYP  IF++R+KY+VPV MS HPDLN YI + LH    +  +   +KV+V +     D+E H P+E F FE++  P L
Sbjct:   13 QVVADILCEFLEVAIHLILYVRDVYPSGIFQKRKKYNVPVQMSCHPDLNQYIQDTLHCVKPLIEKNEAEKVVVVIM----DKE-HRPVERFVFEISQPPLL 108          
The following BLAST results are available for this feature:
BLAST of EWM23863.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105139|gb|EWM23863.1|2.892e-113100.00mad2 mitotic arrest deficient-like 2 [Nannochlorop... [more]
gi|553189851|ref|XP_005855085.1|1.089e-54100.00mad2 mitotic arrest deficient-like 2, partial [Nan... [more]
gi|58865782|ref|NP_001012106.1|9.409e-2346.43mitotic spindle assembly checkpoint protein MAD2B ... [more]
gi|1188111758|ref|XP_020778086.1|9.962e-2341.46mitotic spindle assembly checkpoint protein MAD2B ... [more]
gi|1012171525|ref|XP_016004900.1|1.078e-2248.51PREDICTED: mitotic spindle assembly checkpoint pro... [more]
gi|929228863|ref|XP_013990912.1|5.292e-2246.53PREDICTED: mitotic spindle assembly checkpoint pro... [more]
gi|642068123|emb|CDQ89254.1|5.348e-2246.53unnamed protein product [Oncorhynchus mykiss][more]
gi|4835900|gb|AAD30290.1|AF139365_16.016e-2249.49Mad2B protein [Homo sapiens][more]
gi|568931920|ref|XP_006539252.1|6.176e-2248.51PREDICTED: mitotic spindle assembly checkpoint pro... [more]
gi|1025125617|ref|XP_016350628.1|6.831e-2246.53PREDICTED: mitotic spindle assembly checkpoint pro... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6819rna6819Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications