rna6811, rna6811 (mRNA) Nannochloropsis gaditana

Overview
Namerna6811
Unique Namerna6811
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1117
Alignment locationCM002469.1:560475..561875 +

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Properties
Property NameValue
Product60s ribosomal protein l35
Orig transcript idgnl|cribi|Naga_101009g2.10312.mrna
Orig protein idgnl|cribi|Naga_101009g2.10312
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:560475..561875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101009g2gene6585Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6811rna6811-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23878.1cds6795Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6811 ID=rna6811|Name=rna6811|organism=Nannochloropsis gaditana|type=mRNA|length=1117bp
GCGAGCGGCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
ATGACGCAATCCACCTACGGCGCACTCTCTGTCTGCAACATTTCCCTACG
CATTTATTGGAGTAACTTGCATTACATTCTGTCTTGTGCTACGTTTGGTT
GTCGCCGTCTGCGCAACGCAAAGCAACACGGAGTGCATTTTCGTGCGCAG
TGGTGTTGGCTGTCTGACTTTCTGGTTTATGACCTCCTCGTATTCTCTTT
CTAATTATTTGCACATCAAATTCCCTCTACCGACGACTAGTGATGCAGTG
CCCACACAAAAAAAAAGGTCTATGTACGCCCCCGGTTGTTCCTTCCCTCT
TCCTCCTCCTCTTTTTCCTCTTCCTCCTTTTGCCCCACCTCCCCTCGACC
TCTGCCATCAAGCTGTTCGCGTGGGGAGGGCACCAAAGACAGGAGCTTTC
GCCTGCTTTGTCTCCCTACCTTCAAGAGCAGGAGGAGGCTGTGCAAGCCC
ATGACCATCCCTGCGATGGTCGCAGTAAGCGCGGCAGGAGTCGTGATGAT
ACGGGAAATAGGGACGCTACTTGCCGAAACAAAGAATTTCGGGGGAAAAC
TCAGACCAAGACCCGGACTTTGGCGCACGTGACCTGCCCATATTGTCTCT
CTGCTACCGACGACTTCTTTCTGTACACTCCCCTATCGCATTCTGGGGCT
TCAGTTCCGGGGACGGGCGCAGCGCCCCGAGGAGGGCCAAGTCTCATCGG
TCGGGGGGAAGGGAAGGAGGATGATTCTGCGGGAGAGATGCAGTGGCCGG
CAGTCTCCACGCTGCCTACCTCCATGTCTGCAGGGGAGCTGGCGCGCCGA
CTGTACAAAGATAAACCGTGGGTGACGCGCGGTCGCGGGGGAGGGGGAGG
GGAAGCGCAAGAAGAGTCTTGGCGATGACCCAGTTGTGGATGCTAGTGTA
CAGTGGATCGGGAGCAAGTGAGGTGAGGAGGAAGAAGTCCAAGCATGGAA
TGTGAGAAGGCATCATTCGATGGCGTGCACAGAAAACTTGCGAGCAAAAT
AACAAAGAAAGGAGCCATAGGGTCTGTCGCCGCAGCCATTCCCACATCGC
GTCTCGGGCCTGCTCCT
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protein sequence of rna6811

>rna6811-protein ID=rna6811-protein|Name=rna6811|organism=Nannochloropsis gaditana|type=polypeptide|length=125bp
MVAGKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIK
VVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKH
EEGLKTVRAVKREQAVPKRRYALRA
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mRNA from alignment at CM002469.1:560475..561875+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6811 ID=rna6811|Name=rna6811|organism=Nannochloropsis gaditana|type=mRNA|length=1401bp|location=Sequence derived from alignment at CM002469.1:560475..561875+ (Nannochloropsis gaditana)
GGATTgcgtcatccctccctccctccctccctccctccctccctccctcc
ctcgccgctcGCCATCCACCACACACCTCCTGAAACGCCAGCCCTCATCA
GTTCCCGTGGTTCCGCGAGTCATTGGTCACGAAAACGTGCCAAAGCTTGT
GTCTGTAAGCATGATGAGCTTGCGTGACCTTGGACAAGCATGGTATCCGT
AGAGATCGACGCAATAGATGTTTTTTTACATGGATTGAGGGGTACCCGCC
CCgtcgaggaaaagaagagggccTCGCAAGCAGAAACCATGCACACCAGT
GAGCGGGCATTCAACGAGCCTCTCACAGTTTGATACTTAATGCACGTACA
GGTGTGATCGTCCACGCACAGGTATTGTCACGGAGCGATCGGAGAAATGG
TTGCAGGTGAGTACTCTTCGTGATGTCCTCTCTTTGCCTGTGCCCGAGGC
CTTTCCAGTCGTAACACGCGAAGGACGATGGATAAGATAACATGCCATTG
TGATGACAGAAGATTGACAGTATTCAATAGCCACTGTCTATTGCGTCCCG
TGCCTCTCTGATCTCATCCTAAGATGCCACGGCTTTGGCCCTGCGGCCTG
ATGACCTGCCCCTTCGCGAAGCCTCACTCACCTTCATCCTGGCATGCCGA
CATGACTCATCGCTGTGCCTGCATTGAACTTTTTTAATGCATCCATGCTC
CCTGTTCGGCTCTTTGCCTGTCTGACAtttctgcttcttctcccctgccc
ttccaTTGTCAGGTAAATTGAAAGCCAAGGACCTTCGTACCAAGTCCAAG
GCCGAGATGGTCaagcagctggaggagctcAAGAAGGAGCTTTCCGAGCT
GCGGGTGGCGAAGGTGACTGGCGGGGCAGCGTCGAAACTGGCGAAAATCA
AGGTGGTTCGCAAAAGCATCGCTCGCGTCCTGACTGTCTACAATCAGACC
CAGAAGGCCAAGCTCCGTGAGAAGTTCACAGGAAGCAAATACATGCCCAT
GGATCTGCGCAGGAAAAAAACACGTGCTATCCGACGGCGACTAACGAAgc
acgaggaagggctgAAAACCGTCCGGGCTGTGaaaagggagcaagcggTT
CCGAAGCGCAGATACGCGTTGAGGGCAtagacaaggagggaaggagaaag
ggaggggagaagggaaagagggaataggggaggggtcgaggggaAGGCAT
ATGGACGCTGGCGTCGGATTGAATTTCCTGGTCAATGTGTTCGGATGCGT
GGTTGAATGAGCGAAGGGGGCCTCTGTCagtgcgggagagggcgacaaGA
GGGGGGCGTCCTGCAGGGCGGTAGATGTGGCAGACGAACGGCCTCGTGCA
TGCACTAAGCAAGACTGAGAAAAGGAATCCACACACGAGCGGCAAGTGTA
T
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Coding sequence (CDS) from alignment at CM002469.1:560475..561875+

>rna6811 ID=rna6811|Name=rna6811|organism=Nannochloropsis gaditana|type=CDS|length=756bp|location=Sequence derived from alignment at CM002469.1:560475..561875+ (Nannochloropsis gaditana)
ATGGTTGCAGGTAAATTGAAAGCCAAGGACCTTCGTACCAAGTCCAAGGC
CGAGATGGTCaagcagctggaggagctcAAGAAGGAGCTTTCCGAGCTGC
GGGTGGCGAAGGTGACTGGCGGGGCAGCGTCGAAACTGGCGAAAATCAAG
GTGGTTCGCAAAAGCATCGCTCGCGTCCTGACTGTCTACAATCAGACCCA
GAAGGCCAAGCTCCGTGAGAAGTTCACAGGAAGCAAATACATGCCCATGG
ATCTGCGCAGGAAAAAAACACGTGCTATCCGACGGCGACTAACGAAgcac
gaggaagggctgAAAACCGTCCGGGCTGTGaaaagggagcaagcggTTCC
GAAGCGCAGATACGCGTTGAGGGCAtagATGGTTGCAGGTAAATTGAAAG
CCAAGGACCTTCGTACCAAGTCCAAGGCCGAGATGGTCaagcagctggag
gagctcAAGAAGGAGCTTTCCGAGCTGCGGGTGGCGAAGGTGACTGGCGG
GGCAGCGTCGAAACTGGCGAAAATCAAGGTGGTTCGCAAAAGCATCGCTC
GCGTCCTGACTGTCTACAATCAGACCCAGAAGGCCAAGCTCCGTGAGAAG
TTCACAGGAAGCAAATACATGCCCATGGATCTGCGCAGGAAAAAAACACG
TGCTATCCGACGGCGACTAACGAAgcacgaggaagggctgAAAACCGTCC
GGGCTGTGaaaagggagcaagcggTTCCGAAGCGCAGATACGCGTTGAGG
GCAtag
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Synonyms
Publications