EWM23878.1, cds6795 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|553189848|ref|XP_005855084.1| (large subunit ribosomal protein L35e [Nannochloropsis gaditana CCMP526] >gi|422293968|gb|EKU21268.1| large subunit ribosomal protein L35e [Nannochloropsis gaditana CCMP526] >gi|585105157|gb|EWM23878.1| 60s ribosomal protein l35 [Nannochloropsis gaditana]) HSP 1 Score: 239.965 bits (611), Expect = 5.653e-80 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query: 1 MVAGKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
MVAGKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA
Sbjct: 1 MVAGKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|953493049|emb|CEG44995.1| (ribosomal protein l29 [Plasmopara halstedii]) HSP 1 Score: 159.458 bits (402), Expect = 3.929e-48 Identity = 78/122 (63.93%), Postives = 104/122 (85.25%), Query Frame = 0
Query: 4 GKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
++KA +LRTKSK E+++QL++ ++EL++LRVAKV GGAASKL+KI+VVRKSIARVLTVYNQ QKAKLR K++P+DLRRKKTRAIRR+L+KH++ +KT++ K+E PKRRYAL+A
Sbjct: 2 AQIKAHELRTKSKTELLRQLDDYQQELAQLRVAKVIGGAASKLSKIRVVRKSIARVLTVYNQNQKAKLRSALGNKKHVPLDLRRKKTRAIRRQLSKHDKSIKTLKQQKKESYFPKRRYALKA 123
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|675174711|ref|XP_008896240.1| (ribosomal protein L29 [Phytophthora parasitica INRA-310] >gi|566013155|gb|ETI36066.1| ribosomal protein L29 [Phytophthora parasitica P1569] >gi|568038665|gb|ETM36187.1| ribosomal protein L29 [Phytophthora parasitica] >gi|568103947|gb|ETN18604.1| ribosomal protein L29 [Phytophthora parasitica INRA-310] >gi|570316841|gb|ETO64789.1| ribosomal protein L29 [Phytophthora parasitica P1976] >gi|570940630|gb|ETP05887.1| ribosomal protein L29 [Phytophthora parasitica CJ01A1] >gi|570970876|gb|ETP33995.1| ribosomal protein L29 [Phytophthora parasitica P10297]) HSP 1 Score: 159.073 bits (401), Expect = 5.111e-48 Identity = 79/121 (65.29%), Postives = 104/121 (85.95%), Query Frame = 0
Query: 5 KLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
++KA +LRTKSK E+++QL++ ++EL++LRVAKV GGAASKL+KI+VVRKSIARVLTVYNQ QKAKLR K++P+DLRRK+TRAIRR+L+KHE+ LKT++ K+E PKRRYAL+A
Sbjct: 3 QIKAHELRTKSKTELLRQLDDYQQELAQLRVAKVIGGAASKLSKIRVVRKSIARVLTVYNQNQKAKLRAALGSKKHVPLDLRRKQTRAIRRQLSKHEKSLKTLKQQKKESYYPKRRYALKA 123
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|695396463|ref|XP_009521468.1| (hypothetical protein PHYSODRAFT_285167 [Phytophthora sojae] >gi|348686365|gb|EGZ26180.1| hypothetical protein PHYSODRAFT_285167 [Phytophthora sojae]) HSP 1 Score: 159.073 bits (401), Expect = 5.518e-48 Identity = 78/121 (64.46%), Postives = 105/121 (86.78%), Query Frame = 0
Query: 5 KLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
++KA +LRTKSK E+++QL++ ++EL++LRVAKV GGAASKL+KI+VVRKSIARVLTVYNQ QKAKLR+ K++P+DLRRK+TRAIRR+L+KHE+ LKT++ K+E PKRR+AL+A
Sbjct: 3 QIKAHELRTKSKTELLRQLDDYQQELAQLRVAKVIGGAASKLSKIRVVRKSIARVLTVYNQNQKAKLRDALGSKKHVPLDLRRKQTRAIRRQLSKHEKSLKTLKQQKKESYYPKRRFALKA 123
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|567950583|gb|ETK76293.1| (ribosomal protein L29 [Phytophthora parasitica] >gi|567979252|gb|ETL29734.1| ribosomal protein L29 [Phytophthora parasitica]) HSP 1 Score: 159.073 bits (401), Expect = 5.884e-48 Identity = 79/122 (64.75%), Postives = 104/122 (85.25%), Query Frame = 0
Query: 4 GKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
++KA +LRTKSK E+++QL++ ++EL++LRVAKV GGAASKL+KI+VVRKSIARVLTVYNQ QKAKLR K++P+DLRRK+TRAIRR+L+KHE+ LKT++ K+E PKRRYAL+A
Sbjct: 3 DRIKAHELRTKSKTELLRQLDDYQQELAQLRVAKVIGGAASKLSKIRVVRKSIARVLTVYNQNQKAKLRAALGSKKHVPLDLRRKQTRAIRRQLSKHEKSLKTLKQQKKESYYPKRRYALKA 124
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|327290690|ref|XP_003230055.1| (PREDICTED: 60S ribosomal protein L35 [Anolis carolinensis]) HSP 1 Score: 158.688 bits (400), Expect = 6.433e-48 Identity = 83/122 (68.03%), Postives = 103/122 (84.43%), Query Frame = 0
Query: 4 GKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
K+KA+DLR K K E++KQLE+LK ELS+LRVAKVTGGAASKL+KI+VVRKSIARVLTV NQTQK LR+ + G KY P+DLR KKTRA+RRRLTKHE+GLKT + ++E+ P R+YA++A
Sbjct: 2 AKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEQGLKTKKQQRKERLYPPRKYAVKA 123
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|1173935090|gb|OQR86272.1| (60S ribosomal protein L35 [Achlya hypogyna]) HSP 1 Score: 158.303 bits (399), Expect = 1.065e-47 Identity = 80/121 (66.12%), Postives = 104/121 (85.95%), Query Frame = 0
Query: 5 KLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
++KA +LR K+K+E++ +L++ ++EL++LRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKA+LREK K++P+DLR KKTRAIRR LTK E+ +KT++ K+E PKRRYAL+A
Sbjct: 3 QIKAHELRNKTKSELLAELDDFQQELAQLRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKARLREKLGNGKHVPVDLREKKTRAIRRALTKSEKAIKTLKQQKKEAYFPKRRYALKA 123
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|927190894|ref|XP_013929300.1| (PREDICTED: 60S ribosomal protein L35 [Thamnophis sirtalis]) HSP 1 Score: 158.303 bits (399), Expect = 1.188e-47 Identity = 82/122 (67.21%), Postives = 102/122 (83.61%), Query Frame = 0
Query: 4 GKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
K+KA+DLR K K E++KQL++LK ELS+LRVAKVTGGAASKL+KI+VVRKSIARVLTV NQTQK LR+ + G KY P+DLR KKTRA+RRRL KHEEGLKT + ++E+ P R+YA++A
Sbjct: 2 AKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEEGLKTKKQQRKERLYPPRKYAMKA 123
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|1214664783|gb|OWY92890.1| (Ribosomal protein L29 [Phytophthora megakarya]) HSP 1 Score: 157.918 bits (398), Expect = 1.385e-47 Identity = 78/121 (64.46%), Postives = 103/121 (85.12%), Query Frame = 0
Query: 5 KLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
++KA +LRTKSK E+++QL++ ++EL++LRVAKV GGAASKL+KI VVRKSIARVLTVYNQ QKAKLR K++P+DLRRK+TRAIRR+L+KHE+ +KT++ K+E PKRRYAL+A
Sbjct: 3 QIKAHELRTKSKTELLRQLDDYQQELAQLRVAKVIGGAASKLSKIGVVRKSIARVLTVYNQNQKAKLRAALGSKKHVPLDLRRKQTRAIRRKLSKHEQSIKTLKQQKKESYYPKRRYALKA 123
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|602627430|ref|XP_007420663.1| (PREDICTED: 60S ribosomal protein L35 [Python bivittatus] >gi|73917399|sp|Q69CJ9.3|RL35_OPHHA RecName: Full=60S ribosomal protein L35 >gi|38049476|gb|AAR10441.1| ribosomal protein L35 [Ophiophagus hannah] >gi|565303857|gb|ETE59715.1| 60S ribosomal protein L35 [Ophiophagus hannah]) HSP 1 Score: 157.532 bits (397), Expect = 2.147e-47 Identity = 82/122 (67.21%), Postives = 102/122 (83.61%), Query Frame = 0
Query: 4 GKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
K+KA+DLR K K E++KQL++LK ELS+LRVAKVTGGAASKL+KI+VVRKSIARVLTV NQTQK LR+ + G KY P+DLR KKTRA+RRRL KHEEGLKT + ++E+ P R+YA++A
Sbjct: 2 AKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEEGLKTKKQQRKERLYPPRKYAVKA 123 The following BLAST results are available for this feature:
BLAST of EWM23878.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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