EWM23878.1, cds6795 (CDS) Nannochloropsis gaditana

Overview
NameEWM23878.1
Unique Namecds6795
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:560871..560880 +
Alignment locationCM002469.1:561237..561604 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23878.1
Product60s ribosomal protein l35
Orig transcript idgnl|cribi|Naga_101009g2.10312.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:560871..560880 +
CM002469.1supercontigCM002469.1:561237..561604 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR018254Ribosomal_L29_CS
IPR001854Ribosomal_L29
Homology
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|553189848|ref|XP_005855084.1| (large subunit ribosomal protein L35e [Nannochloropsis gaditana CCMP526] >gi|422293968|gb|EKU21268.1| large subunit ribosomal protein L35e [Nannochloropsis gaditana CCMP526] >gi|585105157|gb|EWM23878.1| 60s ribosomal protein l35 [Nannochloropsis gaditana])

HSP 1 Score: 239.965 bits (611), Expect = 5.653e-80
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query:    1 MVAGKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
            MVAGKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA
Sbjct:    1 MVAGKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125          
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|953493049|emb|CEG44995.1| (ribosomal protein l29 [Plasmopara halstedii])

HSP 1 Score: 159.458 bits (402), Expect = 3.929e-48
Identity = 78/122 (63.93%), Postives = 104/122 (85.25%), Query Frame = 0
Query:    4 GKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
             ++KA +LRTKSK E+++QL++ ++EL++LRVAKV GGAASKL+KI+VVRKSIARVLTVYNQ QKAKLR      K++P+DLRRKKTRAIRR+L+KH++ +KT++  K+E   PKRRYAL+A
Sbjct:    2 AQIKAHELRTKSKTELLRQLDDYQQELAQLRVAKVIGGAASKLSKIRVVRKSIARVLTVYNQNQKAKLRSALGNKKHVPLDLRRKKTRAIRRQLSKHDKSIKTLKQQKKESYFPKRRYALKA 123          
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|675174711|ref|XP_008896240.1| (ribosomal protein L29 [Phytophthora parasitica INRA-310] >gi|566013155|gb|ETI36066.1| ribosomal protein L29 [Phytophthora parasitica P1569] >gi|568038665|gb|ETM36187.1| ribosomal protein L29 [Phytophthora parasitica] >gi|568103947|gb|ETN18604.1| ribosomal protein L29 [Phytophthora parasitica INRA-310] >gi|570316841|gb|ETO64789.1| ribosomal protein L29 [Phytophthora parasitica P1976] >gi|570940630|gb|ETP05887.1| ribosomal protein L29 [Phytophthora parasitica CJ01A1] >gi|570970876|gb|ETP33995.1| ribosomal protein L29 [Phytophthora parasitica P10297])

HSP 1 Score: 159.073 bits (401), Expect = 5.111e-48
Identity = 79/121 (65.29%), Postives = 104/121 (85.95%), Query Frame = 0
Query:    5 KLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
            ++KA +LRTKSK E+++QL++ ++EL++LRVAKV GGAASKL+KI+VVRKSIARVLTVYNQ QKAKLR      K++P+DLRRK+TRAIRR+L+KHE+ LKT++  K+E   PKRRYAL+A
Sbjct:    3 QIKAHELRTKSKTELLRQLDDYQQELAQLRVAKVIGGAASKLSKIRVVRKSIARVLTVYNQNQKAKLRAALGSKKHVPLDLRRKQTRAIRRQLSKHEKSLKTLKQQKKESYYPKRRYALKA 123          
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|695396463|ref|XP_009521468.1| (hypothetical protein PHYSODRAFT_285167 [Phytophthora sojae] >gi|348686365|gb|EGZ26180.1| hypothetical protein PHYSODRAFT_285167 [Phytophthora sojae])

HSP 1 Score: 159.073 bits (401), Expect = 5.518e-48
Identity = 78/121 (64.46%), Postives = 105/121 (86.78%), Query Frame = 0
Query:    5 KLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
            ++KA +LRTKSK E+++QL++ ++EL++LRVAKV GGAASKL+KI+VVRKSIARVLTVYNQ QKAKLR+     K++P+DLRRK+TRAIRR+L+KHE+ LKT++  K+E   PKRR+AL+A
Sbjct:    3 QIKAHELRTKSKTELLRQLDDYQQELAQLRVAKVIGGAASKLSKIRVVRKSIARVLTVYNQNQKAKLRDALGSKKHVPLDLRRKQTRAIRRQLSKHEKSLKTLKQQKKESYYPKRRFALKA 123          
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|567950583|gb|ETK76293.1| (ribosomal protein L29 [Phytophthora parasitica] >gi|567979252|gb|ETL29734.1| ribosomal protein L29 [Phytophthora parasitica])

HSP 1 Score: 159.073 bits (401), Expect = 5.884e-48
Identity = 79/122 (64.75%), Postives = 104/122 (85.25%), Query Frame = 0
Query:    4 GKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
             ++KA +LRTKSK E+++QL++ ++EL++LRVAKV GGAASKL+KI+VVRKSIARVLTVYNQ QKAKLR      K++P+DLRRK+TRAIRR+L+KHE+ LKT++  K+E   PKRRYAL+A
Sbjct:    3 DRIKAHELRTKSKTELLRQLDDYQQELAQLRVAKVIGGAASKLSKIRVVRKSIARVLTVYNQNQKAKLRAALGSKKHVPLDLRRKQTRAIRRQLSKHEKSLKTLKQQKKESYYPKRRYALKA 124          
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|327290690|ref|XP_003230055.1| (PREDICTED: 60S ribosomal protein L35 [Anolis carolinensis])

HSP 1 Score: 158.688 bits (400), Expect = 6.433e-48
Identity = 83/122 (68.03%), Postives = 103/122 (84.43%), Query Frame = 0
Query:    4 GKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
             K+KA+DLR K K E++KQLE+LK ELS+LRVAKVTGGAASKL+KI+VVRKSIARVLTV NQTQK  LR+ + G KY P+DLR KKTRA+RRRLTKHE+GLKT +  ++E+  P R+YA++A
Sbjct:    2 AKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEQGLKTKKQQRKERLYPPRKYAVKA 123          
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|1173935090|gb|OQR86272.1| (60S ribosomal protein L35 [Achlya hypogyna])

HSP 1 Score: 158.303 bits (399), Expect = 1.065e-47
Identity = 80/121 (66.12%), Postives = 104/121 (85.95%), Query Frame = 0
Query:    5 KLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
            ++KA +LR K+K+E++ +L++ ++EL++LRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKA+LREK    K++P+DLR KKTRAIRR LTK E+ +KT++  K+E   PKRRYAL+A
Sbjct:    3 QIKAHELRNKTKSELLAELDDFQQELAQLRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKARLREKLGNGKHVPVDLREKKTRAIRRALTKSEKAIKTLKQQKKEAYFPKRRYALKA 123          
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|927190894|ref|XP_013929300.1| (PREDICTED: 60S ribosomal protein L35 [Thamnophis sirtalis])

HSP 1 Score: 158.303 bits (399), Expect = 1.188e-47
Identity = 82/122 (67.21%), Postives = 102/122 (83.61%), Query Frame = 0
Query:    4 GKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
             K+KA+DLR K K E++KQL++LK ELS+LRVAKVTGGAASKL+KI+VVRKSIARVLTV NQTQK  LR+ + G KY P+DLR KKTRA+RRRL KHEEGLKT +  ++E+  P R+YA++A
Sbjct:    2 AKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEEGLKTKKQQRKERLYPPRKYAMKA 123          
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|1214664783|gb|OWY92890.1| (Ribosomal protein L29 [Phytophthora megakarya])

HSP 1 Score: 157.918 bits (398), Expect = 1.385e-47
Identity = 78/121 (64.46%), Postives = 103/121 (85.12%), Query Frame = 0
Query:    5 KLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
            ++KA +LRTKSK E+++QL++ ++EL++LRVAKV GGAASKL+KI VVRKSIARVLTVYNQ QKAKLR      K++P+DLRRK+TRAIRR+L+KHE+ +KT++  K+E   PKRRYAL+A
Sbjct:    3 QIKAHELRTKSKTELLRQLDDYQQELAQLRVAKVIGGAASKLSKIGVVRKSIARVLTVYNQNQKAKLRAALGSKKHVPLDLRRKQTRAIRRKLSKHEQSIKTLKQQKKESYYPKRRYALKA 123          
BLAST of EWM23878.1 vs. NCBI_GenBank
Match: gi|602627430|ref|XP_007420663.1| (PREDICTED: 60S ribosomal protein L35 [Python bivittatus] >gi|73917399|sp|Q69CJ9.3|RL35_OPHHA RecName: Full=60S ribosomal protein L35 >gi|38049476|gb|AAR10441.1| ribosomal protein L35 [Ophiophagus hannah] >gi|565303857|gb|ETE59715.1| 60S ribosomal protein L35 [Ophiophagus hannah])

HSP 1 Score: 157.532 bits (397), Expect = 2.147e-47
Identity = 82/122 (67.21%), Postives = 102/122 (83.61%), Query Frame = 0
Query:    4 GKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
             K+KA+DLR K K E++KQL++LK ELS+LRVAKVTGGAASKL+KI+VVRKSIARVLTV NQTQK  LR+ + G KY P+DLR KKTRA+RRRL KHEEGLKT +  ++E+  P R+YA++A
Sbjct:    2 AKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEEGLKTKKQQRKERLYPPRKYAVKA 123          
The following BLAST results are available for this feature:
BLAST of EWM23878.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553189848|ref|XP_005855084.1|5.653e-80100.00large subunit ribosomal protein L35e [Nannochlorop... [more]
gi|953493049|emb|CEG44995.1|3.929e-4863.93ribosomal protein l29 [Plasmopara halstedii][more]
gi|675174711|ref|XP_008896240.1|5.111e-4865.29ribosomal protein L29 [Phytophthora parasitica INR... [more]
gi|695396463|ref|XP_009521468.1|5.518e-4864.46hypothetical protein PHYSODRAFT_285167 [Phytophtho... [more]
gi|567950583|gb|ETK76293.1|5.884e-4864.75ribosomal protein L29 [Phytophthora parasitica] >g... [more]
gi|327290690|ref|XP_003230055.1|6.433e-4868.03PREDICTED: 60S ribosomal protein L35 [Anolis carol... [more]
gi|1173935090|gb|OQR86272.1|1.065e-4766.1260S ribosomal protein L35 [Achlya hypogyna][more]
gi|927190894|ref|XP_013929300.1|1.188e-4767.21PREDICTED: 60S ribosomal protein L35 [Thamnophis s... [more]
gi|1214664783|gb|OWY92890.1|1.385e-4764.46Ribosomal protein L29 [Phytophthora megakarya][more]
gi|602627430|ref|XP_007420663.1|2.147e-4767.21PREDICTED: 60S ribosomal protein L35 [Python bivit... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6811rna6811Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications