rna6807, rna6807 (mRNA) Nannochloropsis gaditana

Overview
Namerna6807
Unique Namerna6807
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1239
Alignment locationCM002469.1:556330..557619 +

Link to JBrowse

Properties
Property NameValue
Productepsin domain-containing protein
Orig transcript idgnl|cribi|Naga_100161g15.9659.mrna
Orig protein idgnl|cribi|Naga_100161g15.9659
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:556330..557619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100161g15gene6581Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6807rna6807-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23890.1cds6791Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6807 ID=rna6807|Name=rna6807|organism=Nannochloropsis gaditana|type=mRNA|length=1239bp
CACACATAGTAATGCCTGGGCTGTGGCTAGTGACTATGCTTTCCTTTTCC
TTCGGCGTTACGTATCCAATGGCATCGGCAGTGTCCCAAGGTATTAAGTC
CTGTGCGTCGTCTAGATCTCTGCCCTCACCACACAAGCTCTTATCCCTAT
ATGATGCTTACCCTCCCCATTTATTCCGACAAAGCATCAAAAGTATTAGG
TTTTGGACATGCGCTTCGTTCACTGTTCAATGTCGCCGCTCCCCTGTCTT
TGGAACAGGGCGCGCACTTTTCTCGTACTCAAAAACCAAGTGATAAGAGA
AGAAAGAGACTCTCTCAGGTTTTAAGCGTCAGCTCGGCAGCCTTCACACC
ATCGTCTACCGGCAGCAAAGCTGCTACAGCTGCGATAGACCCGGACCACT
TTGATATTCCTCCTTTCAGACCGACTCCAGCCTCGGACGAGGACATCGCA
TGTATTGAACAGCGGCAGTTGGGTCACCCAATAACCTGTGCCGGCGGCCC
GCGTCAAAGATGTGCCCACGGGTTTCCTCAAGCTTTTATCTTTCACCCAA
CCAAGACGACTTTTAATTCTGGTCTTTTTCGCCTGTCCTGCCCTCTGCTC
GTGAAGGCCGTGGATGAATTCGAGGCCCAGGGCGGCCTCCAGGAATTCAA
CAGGAAATTGGAAAAGTCCCCCGCGATGCAACGTGAGTTTCGGCGTGTCA
ATGCCCGGCACAGCGCCATCCGCCGCGGGCTTGTGGACCCGGAGGGCCTT
CGGAGCTACGTGGAGAAGCTGGGCGAGGCCGGCGTGGAGCAGATTTTGGC
GAGTGGTATCGCCGGCGTCAGTCCCACCAAAACGGGAGACTTGAAGTGCC
TGCATGCCCATCTGGCGGACTACCTGTGCACACACGACAACGCAATCGGG
GAGGAGGTGTACGAGCATTTACGAACCAACCGTCAGATCGAGGTCGAGGG
AAACGCAGAGTGCTGGCAGCAATGTAATTTGTCGTTTGAACGCACGCCCT
CGTCCTGGTGGTATGTTCCCGTGAAAAATAAACAAAAGCTCCGAAGTCGT
TATCACCGGCGGACCGCGCGGAGGAGGGAACATCGAGAACGTGGGGTGGA
TGAATACGGGGATGGGGAGGAGGATGCGCGTCAAAAGGGATCGAACGAGG
AGCAAAGAGGGACAGCAGCTGGCTAGTCGCCAGGGACTGTGAGACTGAAT
CCGAAAAAGTATCAAACTGGTTGAAGGGGTTCAGCCCTA
back to top

protein sequence of rna6807

>rna6807-protein ID=rna6807-protein|Name=rna6807|organism=Nannochloropsis gaditana|type=polypeptide|length=172bp
MRLRHYCRDKFFLVVGRGGPSTFVSGKTHSCSWTLPVAGALANKVFTRQT
LRDPNIGNMNLNINLESLKNMVDEAKNQIVPRTEMEKRMHEALSNKNWGA
SSTLMNQIASDTYDYEKYHQVLKAIWSALDLPGRSWRSIFKALTLLDHLV
KNGAERVVEEVREGGKEGGHVK
back to top

mRNA from alignment at CM002469.1:556330..557619+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6807 ID=rna6807|Name=rna6807|organism=Nannochloropsis gaditana|type=mRNA|length=1290bp|location=Sequence derived from alignment at CM002469.1:556330..557619+ (Nannochloropsis gaditana)
ATGCGCTTACGCCATTACTGCCGGGATAAATTCTTTCTTGTGGGTAGATA
CGACTCAAGGTCATAGCCAAGGCCTTCGACGCGTTGCTTTCGGTGCGCAT
CCTCGGTGATTGCACGCCAATGGCAGCAAACCAACCACCATCGAAAGCCT
TTTAATTTTCTAGCGAGCCGGCGAGAACGGGGCCTCGGAAACCGACTGAG
GAGTCCTAAGCCTTACTTACGAGACATTCTTCGATCTCCCTGATGATGCG
TCTCCTGTAGCGGCACGTGGCTTCGTTGATGATGAATATATCCTGTACAC
GCTATCCACGGACAGGGCAAAGGCGTTGGTGCTCGTGCTTGTGCCACCAG
TGCTTGTTTAAGTCGGGCGGGGCGGACCCTCAACCTTCGTCAGCGGAAAG
ACACATTCCTGTTCTTGGACTCTGCCTGTTGCCGGTGCACTTGCCAATAA
AGTTTTCACGAGGCAAACTCTACGAGGTAAGGTTGGTGGTTGGGGCCGCG
GTGGATCGCGGGCCCGCCTGTACGAGTCTATGGGCTCCAGGCTCATGTGC
TACGCTGGGGTGTGGGGGGTTGTTAGACCATGGGGTGAGCACTAGGGGTG
GACGATATGTCCGACGCAGCGGATGCAGTCTGGGCCAGCGTCTCCTCCAT
ATGTTTAAAATGTAGCCAATTCTTGTAGAACTGTTGTGGCACCTGGCCAC
GCCCTGAAGGAAGCCTGAGTGCTTGCGGGAGGGACCGACTGCGAGACTCA
CCTCTCTacctctccgcctttcccttcatccGTTTGTCTCAGACCCCAAC
ATTGGAAATATGAATCTTAACATTAATTTAGAAAGTCTGAAAAAtatggt
ggacgaggccaaaAATCAGATAGTGCCGCGGACCGAGATGGAAAAGCGGA
TGCACGAAGCCCTTTCGAACAAAAACTGgggcgcttcctccactttgATG
AACCAAATTGCGTCGGACACGTACGACTACGAGAAGTGAGTAAtgaggga
tgagaaggcgGGCACGAAGGCGCCAAACCGGGTGGTGTCGGGGGCCTCAG
TCCTTTCGCGCCGTGGGCCCCCCAGCTtacccctcctacccctcttctcc
accgcccccgttCCTCGCCAGGTACCACCAAGTATTGAAGGCGATATGGT
CCGCGCTTGATCTGCCGGGACGAAGCTGGCGGTCGATATTCAAGGCCTTG
ACCCTGCTGGATCACCTGGTGAAGAATGGCGCGGAGAGGGTGGTCgaaga
ggtgagggagggaggaaaggagggaggacacgtGAAGTAG
back to top

Coding sequence (CDS) from alignment at CM002469.1:556330..557619+

>rna6807 ID=rna6807|Name=rna6807|organism=Nannochloropsis gaditana|type=CDS|length=2076bp|location=Sequence derived from alignment at CM002469.1:556330..557619+ (Nannochloropsis gaditana)
ATGCGCTTACGCCATTACTGCCGGGATAAATTCTTTCTTGTGGTCGGGCG
GGGCGGACCCTCAACCTTCGTCAGCGGAAAGACACATTCCTGTTCTTGGA
CTCTGCCTGTTGCCGGTGCACTTGCCAATAAAGTTTTCACGAGGCAAACT
CTACGAGACCCCAACATTGGAAATATGAATCTTAACATTAATTTAGAAAG
TCTGAAAAAtatggtggacgaggccaaaAATCAGATAGTGCCGCGGACCG
AGATGGAAAAGCGGATGCACGAAGCCCTTTCGAACAAAAACTGgggcgct
tcctccactttgATGAACCAAATTGCGTCGGACACGTACGACTACGAGAA
GTACCACCAAGTATTGAAGGCGATATGGTCCGCGCTTGATCTGCCGGGAC
GAAGCTGGCGGTCGATATTCAAGGCCTTGACCCTGCTGGATCACCTGGTG
AAGAATGGCGCGGAGAGGGTGGTCgaagaggtgagggagggaggaaagga
gggaggacacgtGAAGTAGATGCGCTTACGCCATTACTGCCGGGATAAAT
TCTTTCTTGTGGTCGGGCGGGGCGGACCCTCAACCTTCGTCAGCGGAAAG
ACACATTCCTGTTCTTGGACTCTGCCTGTTGCCGGTGCACTTGCCAATAA
AGTTTTCACGAGGCAAACTCTACGAGACCCCAACATTGGAAATATGAATC
TTAACATTAATTTAGAAAGTCTGAAAAAtatggtggacgaggccaaaAAT
CAGATAGTGCCGCGGACCGAGATGGAAAAGCGGATGCACGAAGCCCTTTC
GAACAAAAACTGgggcgcttcctccactttgATGAACCAAATTGCGTCGG
ACACGTACGACTACGAGAAGTACCACCAAGTATTGAAGGCGATATGGTCC
GCGCTTGATCTGCCGGGACGAAGCTGGCGGTCGATATTCAAGGCCTTGAC
CCTGCTGGATCACCTGGTGAAGAATGGCGCGGAGAGGGTGGTCgaagagg
tgagggagggaggaaaggagggaggacacgtGAAGTAGATGCGCTTACGC
CATTACTGCCGGGATAAATTCTTTCTTGTGGTCGGGCGGGGCGGACCCTC
AACCTTCGTCAGCGGAAAGACACATTCCTGTTCTTGGACTCTGCCTGTTG
CCGGTGCACTTGCCAATAAAGTTTTCACGAGGCAAACTCTACGAGACCCC
AACATTGGAAATATGAATCTTAACATTAATTTAGAAAGTCTGAAAAAtat
ggtggacgaggccaaaAATCAGATAGTGCCGCGGACCGAGATGGAAAAGC
GGATGCACGAAGCCCTTTCGAACAAAAACTGgggcgcttcctccactttg
ATGAACCAAATTGCGTCGGACACGTACGACTACGAGAAGTACCACCAAGT
ATTGAAGGCGATATGGTCCGCGCTTGATCTGCCGGGACGAAGCTGGCGGT
CGATATTCAAGGCCTTGACCCTGCTGGATCACCTGGTGAAGAATGGCGCG
GAGAGGGTGGTCgaagaggtgagggagggaggaaaggagggaggacacgt
GAAGTAGATGCGCTTACGCCATTACTGCCGGGATAAATTCTTTCTTGTGG
TCGGGCGGGGCGGACCCTCAACCTTCGTCAGCGGAAAGACACATTCCTGT
TCTTGGACTCTGCCTGTTGCCGGTGCACTTGCCAATAAAGTTTTCACGAG
GCAAACTCTACGAGACCCCAACATTGGAAATATGAATCTTAACATTAATT
TAGAAAGTCTGAAAAAtatggtggacgaggccaaaAATCAGATAGTGCCG
CGGACCGAGATGGAAAAGCGGATGCACGAAGCCCTTTCGAACAAAAACTG
gggcgcttcctccactttgATGAACCAAATTGCGTCGGACACGTACGACT
ACGAGAAGTACCACCAAGTATTGAAGGCGATATGGTCCGCGCTTGATCTG
CCGGGACGAAGCTGGCGGTCGATATTCAAGGCCTTGACCCTGCTGGATCA
CCTGGTGAAGAATGGCGCGGAGAGGGTGGTCgaagaggtgagggagggag
gaaaggagggaggacacgtGAAGTAG
back to top
Synonyms
Publications