rna6806, rna6806 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6806
Unique Name	rna6806
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2463
Alignment location	CM002469.1:554133..555963 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF501
Orig transcript id	gnl\|cribi\|Naga_100161g14.9660.mrna
Orig protein id	gnl\|cribi\|Naga_100161g14.9660
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:554133..555963 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100161g14	gene6580	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6806	rna6806-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23891.1	cds6790	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:554133..555963+
coding sequence from alignment at CM002469.1:554133..555963+

mRNA sequence

>rna6806 ID=rna6806|Name=rna6806|organism=Nannochloropsis gaditana|type=mRNA|length=2463bp
AATGGGGAGGGTAAGCATCATATAGGGATAAGAGCTTGTGTGGTGAGGGC
AGAGATCTAGACGACGCACAGGACTTAATACCTTGGGACACTGCCGATGC
CATTGGATACGTAACGCCGAAGGAAAAGGAAAGCATAGTCACTAGCCACA
GCCCAGGCATTACTATGTGTGCATGTGTGAGATGTACGCCAACGTTAGAC
CTTCAGAGGACGAAAATCCTTGTTAAGGGGGGGGGACTGGGTTGTAGTAA
TCGTCGTTTAACCTCCCCGCCAGACGCTCTTACGCAAGACACTTCAACAC
TTAAAATGTGGGTGTCGGAGTCTGGAATGCCCTGTCGATCCAAATTGCTA
AATGGAGCTTCATAGTGTAGCCGGAGTTGAATGAACCAGCTAGAGTTATC
AAGCAACTTGTAAAGGAGCAGGCTTTAAGAAACCTTGCATGCCCTGGAAA
TTCCTATTGACCCTCGCACTAGCTATCTCCCTATCACTGGCGTACCTTCC
GCGGAGTGCTTCCTTTGTCCGTCCTATCACAATGACCAGTACAGCTGTCT
CCAAGCCTGCTGCGAAAGGGGCAGCTCGCACGGTTTCTCTCCATTGGTTC
CGGAAAGGCTTGCGTTTACACGATAATCCTGCCCTGTTGGAGGCATGTGA
AGGAGCCACGCATGTGTACCCCGTGTTCATCCTCGATCCACACTTCGCCA
AGCCCGACGTCATTGGCGTCCTGCGGTACCGATTCATGCTGCAAACGATC
AAGAACCTGGATGACAATTTGCGTGAAATCGGTTCTCGGTTGTTCGTGGT
CAAGGGTCAACCGGCGGAGGCCCTGCCCCGGCTTTTTAGGGAGTGGGGAG
TGACGAAACTCACGTTCGAAAGCGACACCGAGCCCTACGCCAAGGTCCGC
GACCGACACGTGTGCGAGCTTGCCGCGGAGCACCAGGTGCATGTCCAGAC
TTTCCCCTCGCACACCCTTCACGACCCCGAGGCTTACGTGGCGCGCCTGC
AGGGGAAGGATGTGCCCACAGTCTACCAGTCCTTCGTGAAGCTATTCGCC
TCCATGGGCCCCGTGGCCCCCGTGGCTTCGACTGTTGACGCCAAGCGGCT
CCCACCCCCGGCGCTGGAGTATTTGTCGGGTCAAGACGGAAAGAAGGCTG
GCCAAGGGAACGGGCATGCTGGAGGCGAGGAGATAGAGGAAGACCGGACA
CGAGGCGACGATTTCTCCGTCCCTGGTCTCTCGGGAATAGGCTACCCGGA
GACGGATGCCCCTACCCTGTATCCCGGGGGGGAGACGGCGGCCCTGGCCC
GGATGCAGGAGCATCTGGCCAATGTCAAGTACATCGTCACGTTCGAGAAA
CCCAAGACCTCTCCCAACGCCCTCCGGCCCTCCACGACCGTCCTCTCTCC
TTACTTGAAGCACGGGGCCCTGTCCTCCCGCCTCTTTTACCACTCCCTGC
GCTCCATCCTTGCGCAGCACAAGGGCCCCCACACCCAGCCCCCGGTCTCC
CTGGTAGGGCAGCTGCTCTGGCGCGAGTTCTTCTACCTGCAGGGGCACGC
CACGCCCAATTTCGACAAGATGGTGGGGAACCCGATCTGCCGACAGATCC
CATGGGGGAAGAACGCGGAGCTTCTGGGCGCCTGGGAAGAGGCGCGGACC
GGATACCCTTTCATTGACGCGTGCATGACGCAGCTCCGGGAGGAAGGCTG
GATCCACCATCTGGCCCGGCACGCCCTGGCGTGTTTTTTGACGCGGGGGG
ACCTGTGGCAGAGCTGGGAGGAAGGGGCGAGGGTGTTTGAGAAGTACTTA
TTGGACGCCGACTGGAGCGTGAATACAGGGAACTGGCTCTGGCTCTCGGC
GTCGGCCTTTTTTCACCAGTACTTCCGGGTCTATTCCCCCGTGGCTTTCG
GGGCCAAGACGGACAAGGAGGGCGAGTACATCCGCAAGTATCTGCCGGTG
CTGCGGAAAATGCCAATCAAGTACATTTATGAACCTTGGAAAGCCCCCAA
AGGTGTCCAAGAAACAGCGGGCTGTGTGGTGGGCCGAGACTACCCTCACC
CGGTGGTCGACCATGCCACAGTCAGCAAGCAGCTGATGGGCAAGATGAAG
GCGGCTTACGACGCAAACAAGGAGGGGGGGGGCAAAGGGGGGGAGAAGTC
TGGCGAGAAGAAGAGGCCGGCGGGGGAGGACGGAAAGGGGGGTAAGACTA
AGAAGCGGGCCTAAGAGTCGCAGATAGGAGGGGTATGATGGTCGAAGCTG
ATGAAAGGGTTGATGGTGCTGTAAGGGAGTTAACTGGAGAAGCGTTGTGA
CAAGGCTTGCATGGGGATGGAGCGGGAAAGCAGGCGAGGAAGACCAGTGA
GCGCATTCTCCGAGATGCGCGTGTGGATAAAAGTGTAACATACGTGGAAG
CCATCGAAAGGCGGCCGATGAATCAAACGCTGGGAGCGATATGGGCACGA
TTTAGACACTTGG

protein sequence of rna6806

>rna6806-protein ID=rna6806-protein|Name=rna6806|organism=Nannochloropsis gaditana|type=polypeptide|length=341bp
MMLTLPIYSDKASKVLGFGHALRSLFNVAAPLSLEQGAHFSRTQKPSDKR
RKRLSQVLSVSSAAFTPSSTGSKAATAAIDPDHFDIPPFRPTPASDEDIA
CIEQRQLGHPITCAGGPRQRCAHGFPQAFIFHPTKTTFNSGLFRLSCPLL
VKAVDEFEAQGGLQEFNRKLEKSPAMQREFRRVNARHSAIRRGLVDPEGL
RSYVEKLGEAGVEQILASGIAGVSPTKTGDLKCLHAHLADYLCTHDNAIG
EEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSR
YHRRTARRREHRERGVDEYGDGEEDARQKGSNEEQRGTAAG

mRNA from alignment at CM002469.1:554133..555963+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6806 ID=rna6806|Name=rna6806|organism=Nannochloropsis gaditana|type=mRNA|length=1831bp|location=Sequence derived from alignment at CM002469.1:554133..555963+ (Nannochloropsis gaditana)
CACACATAGTAATGCCTGGGCTGTGGCTAGTGACtatgctttccttttcc
ttcggcGTTACGTATCCAATGGCATCGGCAGTGTCCCAAGGTATTAAGTC
CTGTGCGTCGTCTAGATCTCTGCCCTCACCACACAAGCTCTTATCCCTAT
ATGATGCTTACCCTCCCCATTTATTCCGACAAAGCATCAAAAGTATTAGG
TTTTGGACATGCGCTTCGTTCACTGTTCAATGTCGCCGCTCCCCTGTCTT
TGGAACAGGGCGCGCACTTTTCTCGTACTCAAAAACCAAGTGAtaagaga
agaaagagactcTCTCAGGTTTTAAGCGTCAGCTCGGCAGCCTTCACACC
ATCGTCTACCGGCAGCAAAGCTGCTACAGCTGCGATAGACCCGGACCACT
TTGATATTCCTCCTTTCAGACCGACTCCAGCCTCGGACGAGGACATCGCA
TGTATTGAACAGCGGCAGTTGGGTCACCCAATAACCTGTGCCGGCGGCCC
GCGTCAAAGATGTGCCCACGGGTTTCCTCAAGCTTTTATCTTTCACCCAA
CCAAGACGACTTTTAATTCTGGTCTTTTTCGCCTGTCCTGCCCTCTGCTC
GTGAAGGCCGTGGATGAATTCGAGGCCCAGGGTgagcagaaagggaggag
ggtctggTATTCCTGGGGAAGCAGGGCTGCAAAGGGAAGGCTTCATTGAT
GCTTTTGGAATGCGTGAATTATTCTCTGAATACTTTTATTCTTCAAGTGA
TTGTCTGAAGCGAAGTGCGTTGGCAGGCTCGCGACggttcttttcttctt
cttgtcatCTCCTTGAGGTCAACACACTCCCGAGCCCCCATTGGCCCCCT
TTCAACGAGCTCCCCGCCCCATGCACTGCTTGGCTCGTATTCGACGTGAT
CGCGAAAAAGGGTgttaccctccctccctccagtcgcCCTTTGCTTCCGA
GTCGGTTCTCCGATCCacccgtttccctcccttccccctctccctccagg
cggCCTCCAGGAATTCAACAGGAAATTGGAAAAGTCCCCCGCGATGCAAC
GTGAGTTTCGGCGTGTCAATGCCCGGCACAGCGCCATCCGCCGCGGGctt
gtggacccggagggCCTTCGGAGCTACGTGGAGAAGCTGGGCGAGGCCGG
CGTGGAGCAGATTTTGGCGAGTGGTATCGCCGGCGTCAGTCCCACCAAAA
CGGGAGACTTGAAGTGCCTGCATGCCCATCTGGCGGACTACCTGTGCACA
cgtagggggggaggggaaggcaaggggtgggggaggggaggggccgtgcT
GCGTGCAAAAGAGGATGTTGCCCTCGCATACCGCGACATTTCCGTTGCCT
TACTTTCTGGGTGTATGGAATGGCTctgtcatcctcatccttctACACCC
TTGTGGCGTCATGGGTACATCCAGAATGACCTGTGTCCTTGatgtcctcc
atcccctctctccctcttgttACAGACGACAACGCaatcggggaggaggt
gtacGAGCATTTACGAACCAACCGTCAGATCGAGGTCGAGGGAAACGCAG
AGTGCTGGCAGCAATGTAATTTGTCGTTTGAACGCACGCCCTCGTCCTGG
TGGTATGTTCCCGTGAAAAATAAACAAAAGCTCCGAAGTCGTTATCACCG
GCGGAccgcgcggaggagggaacatCGAGAACGTGGGGTGGATGAATacg
gggatggggaggaggatgcgcgTCAAAAGGGATCGAACGAGGAGCAAAGA
GGGACAGCAGCTGGCTAGTCGCCAGGGACTGTGAGACTGAATCCGAAAAA
GTATCAAACTGGTTGAAGGGGTTCAGCCCTA

Coding sequence (CDS) from alignment at CM002469.1:554133..555963+

>rna6806 ID=rna6806|Name=rna6806|organism=Nannochloropsis gaditana|type=CDS|length=3078bp|location=Sequence derived from alignment at CM002469.1:554133..555963+ (Nannochloropsis gaditana)
ATGATGCTTACCCTCCCCATTTATTCCGACAAAGCATCAAAAGTATTAGG
TTTTGGACATGCGCTTCGTTCACTGTTCAATGTCGCCGCTCCCCTGTCTT
TGGAACAGGGCGCGCACTTTTCTCGTACTCAAAAACCAAGTGAtaagaga
agaaagagactcTCTCAGGTTTTAAGCGTCAGCTCGGCAGCCTTCACACC
ATCGTCTACCGGCAGCAAAGCTGCTACAGCTGCGATAGACCCGGACCACT
TTGATATTCCTCCTTTCAGACCGACTCCAGCCTCGGACGAGGACATCGCA
TGTATTGAACAGCGGCAGTTGGGTCACCCAATAACCTGTGCCGGCGGCCC
GCGTCAAAGATGTGCCCACGGGTTTCCTCAAGCTTTTATCTTTCACCCAA
CCAAGACGACTTTTAATTCTGGTCTTTTTCGCCTGTCCTGCCCTCTGCTC
GTGAAGGCCGTGGATGAATTCGAGGCCCAGGgcggCCTCCAGGAATTCAA
CAGGAAATTGGAAAAGTCCCCCGCGATGCAACGTGAGTTTCGGCGTGTCA
ATGCCCGGCACAGCGCCATCCGCCGCGGGcttgtggacccggagggCCTT
CGGAGCTACGTGGAGAAGCTGGGCGAGGCCGGCGTGGAGCAGATTTTGGC
GAGTGGTATCGCCGGCGTCAGTCCCACCAAAACGGGAGACTTGAAGTGCC
TGCATGCCCATCTGGCGGACTACCTGTGCACAcACGACAACGCaatcggg
gaggaggtgtacGAGCATTTACGAACCAACCGTCAGATCGAGGTCGAGGG
AAACGCAGAGTGCTGGCAGCAATGTAATTTGTCGTTTGAACGCACGCCCT
CGTCCTGGTGGTATGTTCCCGTGAAAAATAAACAAAAGCTCCGAAGTCGT
TATCACCGGCGGAccgcgcggaggagggaacatCGAGAACGTGGGGTGGA
TGAATacggggatggggaggaggatgcgcgTCAAAAGGGATCGAACGAGG
AGCAAAGAGGGACAGCAGCTGGCTAGATGATGCTTACCCTCCCCATTTAT
TCCGACAAAGCATCAAAAGTATTAGGTTTTGGACATGCGCTTCGTTCACT
GTTCAATGTCGCCGCTCCCCTGTCTTTGGAACAGGGCGCGCACTTTTCTC
GTACTCAAAAACCAAGTGAtaagagaagaaagagactcTCTCAGGTTTTA
AGCGTCAGCTCGGCAGCCTTCACACCATCGTCTACCGGCAGCAAAGCTGC
TACAGCTGCGATAGACCCGGACCACTTTGATATTCCTCCTTTCAGACCGA
CTCCAGCCTCGGACGAGGACATCGCATGTATTGAACAGCGGCAGTTGGGT
CACCCAATAACCTGTGCCGGCGGCCCGCGTCAAAGATGTGCCCACGGGTT
TCCTCAAGCTTTTATCTTTCACCCAACCAAGACGACTTTTAATTCTGGTC
TTTTTCGCCTGTCCTGCCCTCTGCTCGTGAAGGCCGTGGATGAATTCGAG
GCCCAGGgcggCCTCCAGGAATTCAACAGGAAATTGGAAAAGTCCCCCGC
GATGCAACGTGAGTTTCGGCGTGTCAATGCCCGGCACAGCGCCATCCGCC
GCGGGcttgtggacccggagggCCTTCGGAGCTACGTGGAGAAGCTGGGC
GAGGCCGGCGTGGAGCAGATTTTGGCGAGTGGTATCGCCGGCGTCAGTCC
CACCAAAACGGGAGACTTGAAGTGCCTGCATGCCCATCTGGCGGACTACC
TGTGCACAcACGACAACGCaatcggggaggaggtgtacGAGCATTTACGA
ACCAACCGTCAGATCGAGGTCGAGGGAAACGCAGAGTGCTGGCAGCAATG
TAATTTGTCGTTTGAACGCACGCCCTCGTCCTGGTGGTATGTTCCCGTGA
AAAATAAACAAAAGCTCCGAAGTCGTTATCACCGGCGGAccgcgcggagg
agggaacatCGAGAACGTGGGGTGGATGAATacggggatggggaggagga
tgcgcgTCAAAAGGGATCGAACGAGGAGCAAAGAGGGACAGCAGCTGGCT
AGATGATGCTTACCCTCCCCATTTATTCCGACAAAGCATCAAAAGTATTA
GGTTTTGGACATGCGCTTCGTTCACTGTTCAATGTCGCCGCTCCCCTGTC
TTTGGAACAGGGCGCGCACTTTTCTCGTACTCAAAAACCAAGTGAtaaga
gaagaaagagactcTCTCAGGTTTTAAGCGTCAGCTCGGCAGCCTTCACA
CCATCGTCTACCGGCAGCAAAGCTGCTACAGCTGCGATAGACCCGGACCA
CTTTGATATTCCTCCTTTCAGACCGACTCCAGCCTCGGACGAGGACATCG
CATGTATTGAACAGCGGCAGTTGGGTCACCCAATAACCTGTGCCGGCGGC
CCGCGTCAAAGATGTGCCCACGGGTTTCCTCAAGCTTTTATCTTTCACCC
AACCAAGACGACTTTTAATTCTGGTCTTTTTCGCCTGTCCTGCCCTCTGC
TCGTGAAGGCCGTGGATGAATTCGAGGCCCAGGgcggCCTCCAGGAATTC
AACAGGAAATTGGAAAAGTCCCCCGCGATGCAACGTGAGTTTCGGCGTGT
CAATGCCCGGCACAGCGCCATCCGCCGCGGGcttgtggacccggagggCC
TTCGGAGCTACGTGGAGAAGCTGGGCGAGGCCGGCGTGGAGCAGATTTTG
GCGAGTGGTATCGCCGGCGTCAGTCCCACCAAAACGGGAGACTTGAAGTG
CCTGCATGCCCATCTGGCGGACTACCTGTGCACAcACGACAACGCaatcg
gggaggaggtgtacGAGCATTTACGAACCAACCGTCAGATCGAGGTCGAG
GGAAACGCAGAGTGCTGGCAGCAATGTAATTTGTCGTTTGAACGCACGCC
CTCGTCCTGGTGGTATGTTCCCGTGAAAAATAAACAAAAGCTCCGAAGTC
GTTATCACCGGCGGAccgcgcggaggagggaacatCGAGAACGTGGGGTG
GATGAATacggggatggggaggaggatgcgcgTCAAAAGGGATCGAACGA
GGAGCAAAGAGGGACAGCAGCTGGCTAG

Synonyms

Publications