EWM23891.1, cds6790 (CDS) Nannochloropsis gaditana

Overview
NameEWM23891.1
Unique Namecds6790
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:554283..554763 +
Alignment locationCM002469.1:555132..555383 +
Alignment locationCM002469.1:555608..555900 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23891.1
ProductProtein of unknown function DUF501
Orig transcript idgnl|cribi|Naga_100161g14.9660.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:554283..554763 +
CM002469.1supercontigCM002469.1:555132..555383 +
CM002469.1supercontigCM002469.1:555608..555900 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007511DUF501
Homology
BLAST of EWM23891.1 vs. NCBI_GenBank
Match: gi|585105172|gb|EWM23891.1| (Protein of unknown function DUF501 [Nannochloropsis gaditana])

HSP 1 Score: 710.294 bits (1832), Expect = 0.000e+0
Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 0
Query:    1 MMLTLPIYSDKASKVLGFGHALRSLFNVAAPLSLEQGAHFSRTQKPSDKRRKRLSQVLSVSSAAFTPSSTGSKAATAAIDPDHFDIPPFRPTPASDEDIACIEQRQLGHPITCAGGPRQRCAHGFPQAFIFHPTKTTFNSGLFRLSCPLLVKAVDEFEAQGGLQEFNRKLEKSPAMQREFRRVNARHSAIRRGLVDPEGLRSYVEKLGEAGVEQILASGIAGVSPTKTGDLKCLHAHLADYLCTHDNAIGEEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSRYHRRTARRREHRERGVDEYGDGEEDARQKGSNEEQRGTAAG 341
            MMLTLPIYSDKASKVLGFGHALRSLFNVAAPLSLEQGAHFSRTQKPSDKRRKRLSQVLSVSSAAFTPSSTGSKAATAAIDPDHFDIPPFRPTPASDEDIACIEQRQLGHPITCAGGPRQRCAHGFPQAFIFHPTKTTFNSGLFRLSCPLLVKAVDEFEAQGGLQEFNRKLEKSPAMQREFRRVNARHSAIRRGLVDPEGLRSYVEKLGEAGVEQILASGIAGVSPTKTGDLKCLHAHLADYLCTHDNAIGEEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSRYHRRTARRREHRERGVDEYGDGEEDARQKGSNEEQRGTAAG
Sbjct:    1 MMLTLPIYSDKASKVLGFGHALRSLFNVAAPLSLEQGAHFSRTQKPSDKRRKRLSQVLSVSSAAFTPSSTGSKAATAAIDPDHFDIPPFRPTPASDEDIACIEQRQLGHPITCAGGPRQRCAHGFPQAFIFHPTKTTFNSGLFRLSCPLLVKAVDEFEAQGGLQEFNRKLEKSPAMQREFRRVNARHSAIRRGLVDPEGLRSYVEKLGEAGVEQILASGIAGVSPTKTGDLKCLHAHLADYLCTHDNAIGEEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSRYHRRTARRREHRERGVDEYGDGEEDARQKGSNEEQRGTAAG 341          
BLAST of EWM23891.1 vs. NCBI_GenBank
Match: gi|553179015|ref|XP_005852636.1| (hypothetical protein NGA_0716200 [Nannochloropsis gaditana CCMP526] >gi|422295898|gb|EKU23197.1| hypothetical protein NGA_0716200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 646.351 bits (1666), Expect = 0.000e+0
Identity = 325/389 (83.55%), Postives = 329/389 (84.58%), Query Frame = 0
Query:   12 ASKVLGFGHALRSLFNVAAPLSLEQGAHFSRTQKPSDKRRKRLSQVLSVSSAAFTPSSTGSKAATAAIDPDHFDIPPFRPTPASDEDIACIEQRQLGHPITCAGGPRQRCAHGFPQAFIFHPTKTTFNSGLFRLSCPLLVKAVDEFEAQ----------------------GGLQEFNRKLEKSPAMQREFRRVNARHSAIRRGLVDPEGLRSYVEKLGEAGVEQILASGIAGVSPTKTGDLKCLHAHLADYLCT-------------------------------------HDNAIGEEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSRYHRRTARRREHRERGVDEYGDGEEDARQKGSNEEQRGTAAG 341
            +SKVLGFGHALRSLFNVAAPLSLEQGAHFSRTQ+PSDKRRKRLSQVLSVSSAAFTP STGSKAATAAIDPDHFDIPPFRPTPASDEDIACIEQRQLGHPITCAGGPRQRCAHGFPQAFIFHPTKTTFNSGLFRLSCPLLVKAVDEFEAQ                      GGLQEFNRKLEKSPAMQREFRRVNARHSAIRRGLVDPEGLRSYVEKLGEAGVEQILASGIAGVSPTKTGDLKCLHAHLADYLCT                                     +DNAIGEEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSRYHRRTARR+EHRERGVDEYGDGEEDARQKGSNEEQRGTAAG
Sbjct:   31 SSKVLGFGHALRSLFNVAAPLSLEQGAHFSRTQQPSDKRRKRLSQVLSVSSAAFTPLSTGSKAATAAIDPDHFDIPPFRPTPASDEDIACIEQRQLGHPITCAGGPRQRCAHGFPQAFIFHPTKTTFNSGLFRLSCPLLVKAVDEFEAQVALCFRVGSPIHPFPSLPSLPPGGLQEFNRKLEKSPAMQREFRRVNARHSAIRRGLVDPEGLRSYVEKLGEAGVEQILASGIAGVSPTKTGDLKCLHAHLADYLCTRTGGGEGKGWGRGGAMLRAKEDVALAYRDISVALLSGYDNAIGEEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSRYHRRTARRKEHRERGVDEYGDGEEDARQKGSNEEQRGTAAG 419          
BLAST of EWM23891.1 vs. NCBI_GenBank
Match: gi|299116385|emb|CBN74650.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 168.318 bits (425), Expect = 1.880e-46
Identity = 86/186 (46.24%), Postives = 109/186 (58.60%), Query Frame = 0
Query:  121 CAHGFPQAFIFHPTKTTFNSGLFRLSCPLLVKAVDEFEAQGGLQEFNRKLEKSPAMQREFRRVNARHSAIRRGLVDPEGLRSYVEKLGEAGVEQILASGIAGVSPTKTGDLKCLHAHLADYLC--THDNAIGEEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSRYHRR 304
            C HGFPQAF F P     +SGLFRLSCPLLV+A+D  E +GG+++ N +L     ++ +F  VN  H  +RR LV P+ +    E +G+ G  + L SGI GV+P K  D KCLHAH+AD L      NAIG    E L   R +  +G   C +QCN   E T  SW Y P KNKQKL+ R  RR
Sbjct:    8 CRHGFPQAFAFDPCGHKVSSGLFRLSCPLLVQAIDLLEDEGGIEDVNARLASEEGLREDFMAVNLAHGMLRRRLVTPDKMGLVEETIGKEGAGRFLDSGITGVTPGKVRDAKCLHAHVADALMRGRSANAIGRATLELLEA-RGVRTDGGDRCSEQCNYLVEETADSWRYTPQKNKQKLQMRKVRR 192          
BLAST of EWM23891.1 vs. NCBI_GenBank
Match: gi|551583035|ref|XP_005776954.1| (hypothetical protein EMIHUDRAFT_463509 [Emiliania huxleyi CCMP1516] >gi|485629145|gb|EOD24525.1| hypothetical protein EMIHUDRAFT_463509 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 144.821 bits (364), Expect = 1.569e-35
Identity = 98/262 (37.40%), Postives = 137/262 (52.29%), Query Frame = 0
Query:   93 PASDEDIACIEQRQLGH-PITCAGGPRQRCAHGFPQAFIFHPT---------KTTFNSGLFRLSCPLLVKAVDEFEAQGGLQEFNRKLEK---SPAMQREFRRVNARHSAIRRGLVD---PEGLRSYVE-------------KLGEAGV----------------EQILASGIAGVSPTKTGDLKCLHAHLADYLC-THDNAIGEEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSRYHRRTARR 308
            P S  D+  +E RQLG+ P   A G   RC HG PQAF++ P          +   +SGLFRLSCPLLV+AVD +EA+G +++   ++++   S   + +    N RH+  RR LV     E L+   E             K   AG                 E +L SG+AG SP+K  ++KCLHA LAD+LC  H N +GE +   +   R + V G+++C QQC+    R  ++WWY PVKNKQKL +R  RR  R+
Sbjct:   59 PVSASDMGALE-RQLGYRPYPLAVG--ARCVHGHPQAFVWDPLARFHGGRARRAPLDSGLFRLSCPLLVQAVDRWEAEGAVRQLQAEVDEGRVSECSRADLEEANRRHALARRALVGNRLEEALQRSREADAAAPPPPPPRRKRTGAGAKSGARPPRALSREELSELVLNSGVAGQSPSKP-EVKCLHAQLADHLCRDHSNPLGEAILSGV-AARGVAVHGDSQCHQQCDCGVAREAATWWYTPVKNKQKLFTRLERRKQRQ 315          
BLAST of EWM23891.1 vs. NCBI_GenBank
Match: gi|551627124|ref|XP_005793543.1| (hypothetical protein EMIHUDRAFT_462020 [Emiliania huxleyi CCMP1516] >gi|485648205|gb|EOD41114.1| hypothetical protein EMIHUDRAFT_462020 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 144.436 bits (363), Expect = 2.062e-35
Identity = 98/262 (37.40%), Postives = 137/262 (52.29%), Query Frame = 0
Query:   93 PASDEDIACIEQRQLGH-PITCAGGPRQRCAHGFPQAFIFHPT---------KTTFNSGLFRLSCPLLVKAVDEFEAQGGLQEFNRKLEK---SPAMQREFRRVNARHSAIRRGLVDP---EGLRSYVE-------------KLGEAGV----------------EQILASGIAGVSPTKTGDLKCLHAHLADYLC-THDNAIGEEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSRYHRRTARR 308
            P S  D+  +E RQLG+ P   A G   RC HG PQAF++ P          +   +SGLFRLSCPLLV+AVD +EA+G +++   ++++   S   + +    N RH+  RR LV     E L+   E             K   AG                 E +L SG+AG SP+K  ++KCLHA LAD+LC  H N +GE +   +   R + V G+++C QQC+    R  ++WWY PVKNKQKL +R  RR  R+
Sbjct:   59 PVSVSDMGALE-RQLGYRPYPLAVG--ARCVHGHPQAFVWDPLARFHGGRARRAPLDSGLFRLSCPLLVQAVDRWEAEGAVRQLQAEVDEGRVSECSRADLEEANRRHALARRALVGSRLEEALQRSREADAAAPPPPPPRRKRTGAGAKSGARPPRALSREELSELVLNSGVAGQSPSKP-EVKCLHAQLADHLCRDHSNPLGEAILSGV-AARGVAVHGDSQCHQQCDCGVAREAATWWYTPVKNKQKLFTRLERRKQRQ 315          
BLAST of EWM23891.1 vs. NCBI_GenBank
Match: gi|676390061|ref|XP_009038309.1| (hypothetical protein AURANDRAFT_65195 [Aureococcus anophagefferens] >gi|323451197|gb|EGB07075.1| hypothetical protein AURANDRAFT_65195 [Aureococcus anophagefferens])

HSP 1 Score: 146.747 bits (369), Expect = 3.505e-35
Identity = 91/230 (39.57%), Postives = 126/230 (54.78%), Query Frame = 0
Query:   93 PASDEDIACIEQRQLGHPITCAGGPRQR-CAHGFPQAFIFHPTKTTFNSGLFRLSCPLLVKAVDEFEAQGGLQEFNRKLEKSPAMQREFR----RVNARHSAIRRGLVD-PEGLRSYVEKLGEAGVEQILASGIAGVSPTKTGDLKCLHAHLADYLCTHDNAIGEEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSRYHRRTARRREHRERGV 316
            P +  D+  IE  QLGH     G P    C  GFPQA +  P+   F +GL RL+CP L +A+D +E    ++  ++ L    A   + R    RVNARH+A RR LV+  +  R  VE+LGE      + SGIAG+S  K  D+KCLHA +AD L + DNA+G+ + + L   R ++V G+  C +QC+         W Y P KNKQKL +   RR    +E R+RGV
Sbjct:   40 PPAAPDVEAIEAHQLGHRTQTIGVPAASLCRRGFPQATLQDPSVHKFGAGLVRLTCPHLCEAIDAWERDDAVRTVSKALLVDGADASKHRDSLDRVNARHAATRRSLVEGTDAERRAVERLGEDAFSHAMGSGIAGISQGKLEDVKCLHAQVADELLSGDNALGKAILDGL-GARGVDVAGSPTCHEQCS----GCDGGWRYTPTKNKQKLWT-TKRRHKELQELRKRGV 263          
BLAST of EWM23891.1 vs. NCBI_GenBank
Match: gi|397631724|gb|EJK70270.1| (hypothetical protein THAOC_08386, partial [Thalassiosira oceanica])

HSP 1 Score: 144.436 bits (363), Expect = 1.400e-34
Identity = 84/206 (40.78%), Postives = 116/206 (56.31%), Query Frame = 0
Query:  121 CAHGFPQAFIFHPTKTTFN-SGLFRLSCPLLVKAVDEFEAQGGLQEF------NRKLEKSPAMQREFRRVNARHSAIRRGLVDPEGLRSYVEK-LGEAGVEQILASGIAGVSPTKTGDLKCLHAHLADYLCTHD--------------NAIGEEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSRYHRR 304
            C HG+PQ+F FHPTK     SGLFRLSCPLLV+A+D++E +GG+++       + +   +   Q  F   N     +R+ L    G  SY+ K LGE   E+ L SGIAG+  ++T ++KC+HAH+AD+LC                 N IGE     L  +R  E+ GN  CWQQCN + +R  S W Y P KN+QKL++   RR
Sbjct:  688 CLHGYPQSFGFHPTKGPKPVSGLFRLSCPLLVEAIDQWEGEGGVRQMTDWLRSDDRFHNASRKQDGFETANRIQKKVRKELA--RGDLSYLSKRLGEFNSERFLDSGIAGIPSSQTFNVKCIHAHVADHLCRRSRDLDSADIENADRGNIIGEHALRIL-GDRGTEICGNEVCWQQCNCNRKRVDSDWSYRPKKNRQKLKTTSERR 890          
BLAST of EWM23891.1 vs. NCBI_GenBank
Match: gi|145356674|ref|XP_001422552.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144582795|gb|ABP00869.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 97.0561 bits (240), Expect = 8.224e-20
Identity = 70/201 (34.83%), Postives = 102/201 (50.75%), Query Frame = 0
Query:   94 ASDEDIACIEQRQLGHPITCA-GGPRQRCAHGFPQAFIFHPTKTTFNSG---------LFRLSCPLLVKAVDEFEAQGGLQEFNRKLEKSPAMQREFRRVNARHSAIRRGLVDPEGLRSYVEKLGEAGVEQILA-SGIAGVS-----PTKT-GDLKCLHAHLADYLCTH--DNAIGEEVYEHLRTNRQIEVEGNAECWQQC 275
            ASDE  A   ++QLGH    A GG  +RC HG+ +A ++ P  TT             L RLSCP L++AVD +E +GG+       +   ++ +   R +     +R  LV  E   S   + GE   + I+  +G+ GVS       KT   +KCLHAH+AD L      NA+G    + LRT R ++V+G  ECW++C
Sbjct:   47 ASDEATA---RKQLGHACAQAIGGEARRCRHGYSRALLYAPASTTTTDARAALKAEHALSRLSCPELIEAVDAWEREGGIHAVAAACDADESLFQSLERAHRDAPRVRNWLVGEE--TSARVREGETKTDFIVNRTGLVGVSLEALTSQKTWKKVKCLHAHIADTLVRGRGKNAVGAFALDVLRTRRGVDVDGTPECWRRC 242          
BLAST of EWM23891.1 vs. NCBI_GenBank
Match: gi|501768533|ref|WP_012635013.1| (DUF501 domain-containing protein [Halothermothrix orenii] >gi|219992211|gb|ACL68814.1| uncharacterized conserved protein [Halothermothrix orenii H 168])

HSP 1 Score: 78.9518 bits (193), Expect = 7.262e-14
Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 0
Query:  102 IEQRQLGHPITCAGGPRQRCAHGFPQAFIFHP---TKTTFNSGLFRLSCPLLVKAVDEFEAQGGLQEFNRKLEKSPAMQREFRRVNARHSAIRRGLVDPEGLRSYVEKLGEAGVEQILASGIAGVSPTKTGDLKCLHAHLADYLCTHDNAIGEEVYEHL 257
            I ++QLG      GG   +C    P   +  P    K  F +  F LSCP LVK V   E +G ++E   K+ K+PA++ E  R +  ++  RR L+  + + + + +     ++ +L SG+ G+   K G +KCLH HLADYL    N +G  V+E L
Sbjct:   10 IIRKQLGREPDNLGGIPLKCPFEKPAVLLTLPYSSDKGIFPTT-FWLSCPYLVKEVSRLEEKGLVKELTEKINKNPALKEELERAHKIYAQKRRSLLGEDEV-AELRRGSPDILKVLLESGVGGIR-NKEG-IKCLHTHLADYLVNGVNPVGRLVWEKL 164          
BLAST of EWM23891.1 vs. NCBI_GenBank
Match: gi|1119868794|ref|WP_072757608.1| (DUF501 domain-containing protein [Fervidobacterium gondwanense] >gi|1109676959|emb|SHN51167.1| hypothetical protein SAMN02745226_00323 [Fervidobacterium gondwanense DSM 13020])

HSP 1 Score: 77.7962 bits (190), Expect = 1.538e-13
Identity = 62/185 (33.51%), Postives = 91/185 (49.19%), Query Frame = 0
Query:   94 ASDEDIACIEQRQLGHPITCAGGPRQRCAHGFPQAFIFHPTKT--TFNSGLFRLSCPLLVKAVDEFEAQGGLQEFNRKLEKSPAMQREFRRVNARHSAI---RRGLVDPEGLRSYVEKLGEAGVEQILAS-GIAGVSPTKTGDLKCLHAHLADYLCTHDNAIGEEVYEHLRTNRQIEVEGNAECW 272
             SD+D+  I  +QL   +       + C+ GFP   + +P +    F + +  L+CP LVK V + E QG ++++ R +E +    R F R+   H  +   R  L+ PE          ++  + +LAS G  G+   KT  LKCLH HLADYL   DN IGE VY       QIE +   EC+
Sbjct:    4 VSDKDLNII-AKQLDRNVENVLSVERYCSFGFPVVILSYPVRNGKPFPT-IHYLTCPHLVKEVSKLEEQGYVKKYERLIEDNI---RFFSRLEQAHKDVIKKRMSLLKPE----------DSEWDAVLASSGTGGIRNWKT--LKCLHLHLADYLAGIDNPIGELVY------NQIEKKECGECY 165          
The following BLAST results are available for this feature:
BLAST of EWM23891.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105172|gb|EWM23891.1|0.000e+0100.00Protein of unknown function DUF501 [Nannochloropsi... [more]
gi|553179015|ref|XP_005852636.1|0.000e+083.55hypothetical protein NGA_0716200 [Nannochloropsis ... [more]
gi|299116385|emb|CBN74650.1|1.880e-4646.24conserved unknown protein [Ectocarpus siliculosus][more]
gi|551583035|ref|XP_005776954.1|1.569e-3537.40hypothetical protein EMIHUDRAFT_463509 [Emiliania ... [more]
gi|551627124|ref|XP_005793543.1|2.062e-3537.40hypothetical protein EMIHUDRAFT_462020 [Emiliania ... [more]
gi|676390061|ref|XP_009038309.1|3.505e-3539.57hypothetical protein AURANDRAFT_65195 [Aureococcus... [more]
gi|397631724|gb|EJK70270.1|1.400e-3440.78hypothetical protein THAOC_08386, partial [Thalass... [more]
gi|145356674|ref|XP_001422552.1|8.224e-2034.83predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|501768533|ref|WP_012635013.1|7.262e-1433.33DUF501 domain-containing protein [Halothermothrix ... [more]
gi|1119868794|ref|WP_072757608.1|1.538e-1333.51DUF501 domain-containing protein [Fervidobacterium... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6806rna6806Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications