rna6805, rna6805 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6805
Unique Name	rna6805
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1709
Alignment location	CM002469.1:551697..554303 -

Link to JBrowse

Properties


Property Name	Value
Product	6-4 photolyase
Orig transcript id	gnl\|cribi\|Naga_100161g13.9662.mrna
Orig protein id	gnl\|cribi\|Naga_100161g13.9662
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:551697..554303 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100161g13	gene6579	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23893.1	cds6789	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6805	rna6805-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:551697..554303-
coding sequence from alignment at CM002469.1:551697..554303-

mRNA sequence

>rna6805 ID=rna6805|Name=rna6805|organism=Nannochloropsis gaditana|type=mRNA|length=1709bp
CCCTACTCCTACCAGCAGCAGGCGGGCGCTTACTCCCCGCAGGCCCTTCC
GTCGCGCCAGCAGCAAGGCGTGTACTTTCCCCAACCGCAGCCACAGTACC
TGCCAGCTCACATTGGCACAGCGGTCCGGAGCAGTTTGATGACCATGAAT
GCGCTCGAGGCCCGCGAGTATTTGGCCTCCATGGCGGTGCAGCAGATCGA
GTACTATTTCTCGGTGGACAACCTTTGTCGCGATACTTACCTTCGTGCCC
ATCTCGACGAGGAGGGCTGGGTGCCCTTAGCGCTCATTTGCAATTTCCCC
ACCGTGGCCAGCTTTGCGGCCGACTACTCGGAGATCGTTAAAACGCTGCA
GGAGGCCTCCTCCGTCCTCGAGTACGACGAGGCGAACGAGACGCTGCGCC
TGAAAGAGAAGGCGACGGCCTGGCTCCTTCCCAACGGGCGCGGAGGCATG
GGTTGCCCTCGGTGGTTGAAACAAGCGCCCGACACGCCCCCGCAGGAATC
CAAGCTCCCTCCGGTCGTGCTCCCTAACCCCGAGGCCGGCGGCGAGAAGG
GTGAGGTTGCCGAGAAGAAGGCCGACAGCGAGGGCCCACGGCAACCCGTC
ACCCCCGTCACCCCTCTGTGCTCCCTCTCCTTTTCTTCCTCCGCGTACTC
CAGCTCCTCTTCCACCACGTCCCCCAGCACTTCTCAACCTGAGAGCAGCG
ACGATGACGAGGACGTGGACCGGAGTCCTTCCTCTTCGTCGCAGAGGGAG
GTCGACATCCAAGCTGACGGCAACAGCAATACGAGAAAGGGAGAGATGGG
AAAGCGCAGTGTCTCCGTCGTCAAGGATGTATGACCGAGGGTCGAAGATG
ATCTAACTGATGACGAGGAGGGATGAACAAGGCATTGGATGGTAGGTGAA
GAAGATAGCTAGGGATTTTCCGTGTATTTCGATAGTTTGAGGAAAGTTTA
AGATAATGGATGTAGCGCAGCAAGGTCCAGCAACAAAATCAACAAAAATT
AGGATAGAGTGTGGCATGTTGGGGAATGCTTACGAGAAGAGCGCGGCAGC
ACCGAGAGCATGCAGTAAGTAAGAGAAATACGATATTTACGACGTGAGCT
TTAGGGCCAAGAATAGGAAGATTGGCAGTGACGATGGCATGCTGATCGAC
ATCGGTTGACCCATGCCAGTACCAACGGAAAAGCTTGAAACAGGCCGCGA
GCGTCGCTTGTGGTGGTGAAGGCCGGCTTCGCTGCGTGGTTCTACACATA
CATAGTGCACCTGCACAGGAGAGGCGGGGTCCTGAGAGAGAGGACTGGCC
TCTAGAAGAGGGTGTAATATCCAGATGATGAACATTAAAAAAGGTGTGTC
AGGTGTCATCGGAGCATGGGATCAGTGGTTTTGGCGAAAAAAAATATAAG
ACGTATGTAAGTGTGACATGACAGAGACGAAAAATGGTAGAAGCAGGCTC
AGGACCCAGAGCGAGAATAGCAAAGATGACGTAAGTTTGGAAGGGTTATT
ACGAAAGATGAGGTTTAATATTGACGCTGAAATGATTGGCTTGATGGCAA
TGCAAAGAGATGTGCCACATAAGCATAGCAAATTGAGAATATGTCCTGCG
CCTGCAGCATCCAACACAGAAAAAAGCAGCAGAAAGACATGTGAGGACGT
TCCACACCGCAGTCAGAAAAAAAACAAAGAATCGACAAATATTAGCATGT
CTCTTCTCC

protein sequence of rna6805

>rna6805-protein ID=rna6805-protein|Name=rna6805|organism=Nannochloropsis gaditana|type=polypeptide|length=591bp
MPWKFLLTLALAISLSLAYLPRSASFVRPITMTSTAVSKPAAKGAARTVS
LHWFRKGLRLHDNPALLEACEGATHVYPVFILDPHFAKPDVIGVLRYRFM
LQTIKNLDDNLREIGSRLFVVKGQPAEALPRLFREWGVTKLTFESDTEPY
AKVRDRHVCELAAEHQVHVQTFPSHTLHDPEAYVARLQGKDVPTVYQSFV
KLFASMGPVAPVASTVDAKRLPPPALEYLSGQDGKKAGQGNGHAGGEEIE
EDRTRGDDFSVPGLSGIGYPETDAPTLYPGGETAALARMQEHLANVKYIV
TFEKPKTSPNALRPSTTVLSPYLKHGALSSRLFYHSLRSILAQHKGPHTQ
PPVSLVGQLLWREFFYLQGHATPNFDKMVGNPICRQIPWGKNAELLGAWE
EARTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVF
EKYLLDADWSVNTGNWLWLSASAFFHQYFRVYSPVAFGAKTDKEGEYIRK
YLPVLRKMPIKYIYEPWKAPKGVQETAGCVVGRDYPHPVVDHATVSKQLM
GKMKAAYDANKEGGGKGGEKSGEKKRPAGEDGKGGKTKKRA

mRNA from alignment at CM002469.1:551697..554303-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6805 ID=rna6805|Name=rna6805|organism=Nannochloropsis gaditana|type=mRNA|length=2607bp|location=Sequence derived from alignment at CM002469.1:551697..554303- (Nannochloropsis gaditana)
AATGGGGAGGGTAAGCATCATATAGGGATAAGAGCTTGTGTGGTGAGGGC
AGAGATCTAGACGACGCACAGGACTTAATACCTTGGGACACTGCCGATGC
CATTGGATACGTAACGCCGAAGGAAAAGGAAAGCATAGTCACTAGCCACA
GCCCAGGCATTACTATGTGTGCATGTGTGAGATGTACGCCAACGTTAGAC
CTTCAGAGGACGAAAATCCTTGTTAAGGGGGGGGGACTGGGTTGTAGTAA
TCGTCGTTTAACCTCCCCGCCAGACGCTCTTACGCAAGACACTTCAACAC
TTAAAATGTGGGTGTCGGAGTCTGGAATGCCCTGTCGATCCAAATTGCTA
AATGGAGCTTCATAGTGTAGCCGGAGTTGAATGAACCAGCTAGAGTTATC
AAGCAACTTGTAAAGGAGCAGGTACGCCGATCAAGGTCAGCACGATTGCC
ACCTCAGCACGTTCGATAGGCTGGGCCGCCATGAGACATAATGCGATGAG
ACTTATAAACAACCGTAAGATTTGGCACTTCATGAATCTGACGTCGCTTA
TCCTATGTCCTGCAGGCTTTAAGAAACCTTGCATGCCCTGGAAATTCCTA
TTGACCCTCGCACTAGCTATCTCCCTATCACTGGCGTACCTTCCGCGGAG
TGCTTCCTTTGTCCGTCCTATCACAATGACCAGTACAGCTGTCTCCAAGC
CTGCTGCGAAAGGGGCAGCTCGCACGGTTTCTCTCCATTGGTTCCGGAAA
GGCTTGCGTTTACACGATAATCCTGCCCTGTTGGAGGCATGTGAAGGAGC
CACGCATGTGTACCCCGTGTTCATCCTCGATCCACACTTCGCCAAGCCCG
ACGTCATTGGCGTCCTGCGGTACCGATTCATGCTGCAAACGATCAAGAAC
CTGGATGACAATTTGCGTGAAATCGGTTCTCGGTTGTTCGTGGTCAAGGG
TCAACCGGCGGAGGCCCTGCCCCGGCTTTTTAGGGAGTGGGGAGTGACGA
AACTCACGTTCGAAAGCGACACCGAGCCCTACGCCAAGGTCCGCGACCGA
CACGTGTGCGAGCTTGCCGCGGAGCACCAGGTGCATGTCCAGACTTTCCC
CTCGCACACCCTTCACGACCCCGAGGCTTACGTGGCGCGCCTGCAGGGGA
AGGATGTGCCCACAGTCTACCAGTCCTTCGTGAAGCTATTCGCCTCCATG
GGCCCCGTGGCCCCCGTGGCTTCGACTGTTGACGCCAAGCGGCTCCCACC
CCCGGCGCTGGAGTATTTGTCGGGTCAAGACGGAAAGAAGGCTGGCCAAG
GGAACGGGCATGCTGGAGGCGAGGAGATAGAGGAAGACCGGACACGAGGC
GACGATTTCTCCGTCCCTGGTCTCTCGGGAATAGGCTACCCGGAGACGGA
TGCCCCTACCCTGTATCCCGGGGGGGAGACGGCGGCCCTGGCCCGGATGC
AGGAGCATCTGGCCAATGTCAAGTACATCGTCACGTTCGAGAAACCCAAG
ACCTCTCCCAACGCCCTCCGGCCCTCCACGACCGTCCTCTCTCCTTACTT
GAAGCACGGGGCCCTGTCCTCCCGCCTCTTTTACCACTCCCTGCGCTCCA
TCCTTGCGCAGCACAAGGGCCCCCACACCCAGCCCCCGGTCTCCCTGGTA
GGGCAGCTGCTCTGGCGCGAGTTCTTCTACCTGCAGGGGCACGCCACGCC
CAATTTCGACAAGATGGTGGGGAACCCGATCTGCCGACAGATCCCATGGG
GGAAGAACGCGGAGCTTCTGGGCGCCTGGGAAGAGGCGCGGACCGGATAC
CCTTTCATTGACGCGTGCATGACGCAGCTCCGGGAGGAAGGCTGGATCCA
CCATCTGGCCCGGCACGCCCTGGCGTGTTTTTTGACGCGGGGGGACCTGT
GGCAGAGCTGGGAGGAAGGGGCGAGGGTGTTTGAGAAGTACTTATTGGAC
GCCGACTGGAGCGTGAATACAGGGAACTGGCTCTGGCTCTCGGCGTCGGC
CTTTTTTCACCAGTACTTCCGGGTCTATTCCCCCGTGGCTTTCGGGGCCA
AGACGGACAAGGAGGGCGAGTACATCCGCAAGTATCTGCCGGTGCTGCGG
AAAATGCCAATCAAGTACATTTATGAACCTTGGAAAGCCCCCAAAGGTGT
CCAAGAAACAGCGGGCTGTGTGGTGGGCCGAGACTACCCTCACCCGGTGG
TCGACCATGCCACAGTCAGCAAGCAGCTGATGGGCAAGATGAAGGCGGCT
TACGACGCAAACAAGGAGGGGGGGGGCAAAGGGGGGGAGAAGTCTGGCGA
GAAGAAGAGGCCGGCGGGGGAGGACGGAAAGGGGGGTAAGACTAAGAAGC
GGGCCTAAGAGTCGCAGATAGGAGGGGTATGATGGTCGAAGCTGATGAAA
GGGTTGATGGTGCTGTAAGGGAGTTAACTGGAGAAGCGTTGTGACAAGGC
TTGCATGGGGATGGAGCGGGAAAGCAGGCGAGGAAGACCAGTGAGCGCAT
TCTCCGAGATGCGCGTGTGGATAAAAGTGTAACATACGTGGAAGCCATCG
AAAGGCGGCCGATGAATCAAACGCTGGGAGCGATATGGGCACGATTTAGA
CACTTGG

Coding sequence (CDS) from alignment at CM002469.1:551697..554303-

>rna6805 ID=rna6805|Name=rna6805|organism=Nannochloropsis gaditana|type=CDS|length=1776bp|location=Sequence derived from alignment at CM002469.1:551697..554303- (Nannochloropsis gaditana)
ATGCCCTGGAAATTCCTATTGACCCTCGCACTAGCTATCTCCCTATCACT
GGCGTACCTTCCGCGGAGTGCTTCCTTTGTCCGTCCTATCACAATGACCA
GTACAGCTGTCTCCAAGCCTGCTGCGAAAGGGGCAGCTCGCACGGTTTCT
CTCCATTGGTTCCGGAAAGGCTTGCGTTTACACGATAATCCTGCCCTGTT
GGAGGCATGTGAAGGAGCCACGCATGTGTACCCCGTGTTCATCCTCGATC
CACACTTCGCCAAGCCCGACGTCATTGGCGTCCTGCGGTACCGATTCATG
CTGCAAACGATCAAGAACCTGGATGACAATTTGCGTGAAATCGGTTCTCG
GTTGTTCGTGGTCAAGGGTCAACCGGCGGAGGCCCTGCCCCGGCTTTTTA
GGGAGTGGGGAGTGACGAAACTCACGTTCGAAAGCGACACCGAGCCCTAC
GCCAAGGTCCGCGACCGACACGTGTGCGAGCTTGCCGCGGAGCACCAGGT
GCATGTCCAGACTTTCCCCTCGCACACCCTTCACGACCCCGAGGCTTACG
TGGCGCGCCTGCAGGGGAAGGATGTGCCCACAGTCTACCAGTCCTTCGTG
AAGCTATTCGCCTCCATGGGCCCCGTGGCCCCCGTGGCTTCGACTGTTGA
CGCCAAGCGGCTCCCACCCCCGGCGCTGGAGTATTTGTCGGGTCAAGACG
GAAAGAAGGCTGGCCAAGGGAACGGGCATGCTGGAGGCGAGGAGATAGAG
GAAGACCGGACACGAGGCGACGATTTCTCCGTCCCTGGTCTCTCGGGAAT
AGGCTACCCGGAGACGGATGCCCCTACCCTGTATCCCGGGGGGGAGACGG
CGGCCCTGGCCCGGATGCAGGAGCATCTGGCCAATGTCAAGTACATCGTC
ACGTTCGAGAAACCCAAGACCTCTCCCAACGCCCTCCGGCCCTCCACGAC
CGTCCTCTCTCCTTACTTGAAGCACGGGGCCCTGTCCTCCCGCCTCTTTT
ACCACTCCCTGCGCTCCATCCTTGCGCAGCACAAGGGCCCCCACACCCAG
CCCCCGGTCTCCCTGGTAGGGCAGCTGCTCTGGCGCGAGTTCTTCTACCT
GCAGGGGCACGCCACGCCCAATTTCGACAAGATGGTGGGGAACCCGATCT
GCCGACAGATCCCATGGGGGAAGAACGCGGAGCTTCTGGGCGCCTGGGAA
GAGGCGCGGACCGGATACCCTTTCATTGACGCGTGCATGACGCAGCTCCG
GGAGGAAGGCTGGATCCACCATCTGGCCCGGCACGCCCTGGCGTGTTTTT
TGACGCGGGGGGACCTGTGGCAGAGCTGGGAGGAAGGGGCGAGGGTGTTT
GAGAAGTACTTATTGGACGCCGACTGGAGCGTGAATACAGGGAACTGGCT
CTGGCTCTCGGCGTCGGCCTTTTTTCACCAGTACTTCCGGGTCTATTCCC
CCGTGGCTTTCGGGGCCAAGACGGACAAGGAGGGCGAGTACATCCGCAAG
TATCTGCCGGTGCTGCGGAAAATGCCAATCAAGTACATTTATGAACCTTG
GAAAGCCCCCAAAGGTGTCCAAGAAACAGCGGGCTGTGTGGTGGGCCGAG
ACTACCCTCACCCGGTGGTCGACCATGCCACAGTCAGCAAGCAGCTGATG
GGCAAGATGAAGGCGGCTTACGACGCAAACAAGGAGGGGGGGGGCAAAGG
GGGGGAGAAGTCTGGCGAGAAGAAGAGGCCGGCGGGGGAGGACGGAAAGG
GGGGTAAGACTAAGAAGCGGGCCTAA

Synonyms

Publications