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Properties
| Property Name | Value |
|---|
| Product | phytoene desaturase |
| Orig transcript id | gnl|cribi|Naga_100161g10.9661.mrna |
| Orig protein id | gnl|cribi|Naga_100161g10.9661 |
| Gene | PDS |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:545181..548002 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6803 ID=rna6803|Name=rna6803|organism=Nannochloropsis gaditana|type=mRNA|length=1133bp
TCCCCCTCCCATGCCATGATAGCATTAATTCGACAACAGTCCATGCACCG
TGCTTGCCCGCCTTCTCTACCATGCATTTCATCCATGTGTCATGCTTGTG
TCCGGAGGCTTCCACGTCGGCTCGACCTCTTTGGTCGCTGTGTATTGCAG
AGTAGCGCAGTCTGCTCGAGCCAGCTCGCTTTCCCTTCAATTTGGTGGGG
CTATTCGCCTCCTCCCCCCCCACTGGCACTGCCGGCAGCCTGCCCGGCAA
ATTCTCAAAAGAACCCAACCTTTGATACCGGTCCGGCCTCGATGTTATTT
TCCATGCCGTTCGCCTCTTTGATGCCATTTGCGATCTTCTTAAGCACAGG
TCGATTCGCAAGTGTTGTTGGAATCGTTGCCTCCTGCATACCGCAGGACG
TGCTGGCGGCAGCGGCGTTGATCCTGTAGGTGGCTACTTTCTGCCTCGCC
TTTGGTCGATATCCTCCACCGTGATTGAAGAAGGGGCGAAGGAGGATGGA
GGGGGAGGCTGGTAACAACACGAGCAACGAGACCGCGCGTCCGGGGAAAG
TGGAGTACAATGCGGTCGAATGGGGGGACAAGCTGGCCGGTCTTGACGCC
TTAGTCAGCCAGGTCGAGCAACCACTGCATCAAGATAGGTTTCAAAAAGT
TCAGGGGCTGTTGAAAAAGAACAATGAGCTTATTGTCCAAGTCATGGAGC
AACAGCGAGAGGCCTCCGAGGTACCTATTCAGCCAACAGCCAAGGAAGCG
GGAAACGAGGAAGGAGGAGGGGAAGAGACGGGCGAGGTCAAAGAAGAGGG
AAACACTGGTGCAGCGCAACAGGCAGCGTTGCAAAAATGTGCGCTCATGA
TCAAAGAGTTGAATGACAACTTGACCCAGGTGTACGATGTATACGCAGCA
TTGCAGCCTACCAAGGACGAGAAGTGAGGAGGATGGCGGGCATGGAGGAA
GCCGTGCGGGGGGGCGTGGATGGGCCGTGTCGGTGTGGGCAGAGCGTGGG
GATGATGTGTAGAAGAAAGAAAAAGCGAATTTCCGACGTTTTCGATGCAT
CCGGGCCCAGGAGAAGGATAAACGGCAGAAGAGAAGGGTGGCGAAATCAC
CCGGAAAAGCCTTTCCAAACTCCTGGCGGGGGT back to topprotein sequence of rna6803 >rna6803-protein ID=rna6803-protein|Name=rna6803|organism=Nannochloropsis gaditana|type=polypeptide|length=590bp
MAKLGVAVASISALLGCFSVQAFIPQTPLSELARHGRSRQSSTSRLVPSA
NFLVDYPPPGERRDYPRPNLEETSSSFKIAEQLSEEIKKFPRPKEGKPTV
VIAGAGLAGLSTAKYLCDAGFKPIVLEARDVLGGKVSAWQDKDGDWIETG
LHIFFGAYPNMMRLFKELKIEERLQWKSHSMIFAMPGKQDAEGRQRFSRF
DFPSFLPAPFNGILAILLNDEMLTWPEKIKFGIGLLPAIIQGQDYVEKQD
SLSVKQWMKQQGVPDRVNDEVFIAMAKALAFIDPDQLSMTIVLTALNRFL
QEKDGSKMAFLDGPPPTRLCEPMVEYIRQNGGEVHLNAPVREMMLHREFR
ESVVDGFRLPNGTIVQGDLYVSAMPVDLVKKVIPKRMKERWSYFDQLDEL
EGVPVINIHLWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKGYQDDEKSM
LELVFAPAKDWIGKSDEDIVAATMEELYRLFPTELSADGSKAKLVKSAVV
KTPRSVYTPLPGKEAFRPDQRTPVGNFYLAGDYTKQIYLGSMEGATLSGK
LCALKIAQDEQEWDGRSQAMDLIAEEEKRAGRAAEAAIKV back to topmRNA from alignment at CM002469.1:545181..548002+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6803 ID=rna6803|Name=rna6803|organism=Nannochloropsis gaditana|type=mRNA|length=2822bp|location=Sequence derived from alignment at CM002469.1:545181..548002+ (Nannochloropsis gaditana)
GCAAACCCGTGCCTTCATCCCCGTGCACACCGATCCGTGCCCATTTTTCC
TCATAGTGCCCTTGCATTTCGTCTGGGAACAGGCAAGGCATACATTTGTT
GGAGGGGTTGAGTTTTTCATCGTCAAGTTGCATCGACAATGGCCAAGCTC
GGTGTGGCGGTGGCCTCAATATCTGCCCTGTTGGGTTGCTTCAGTGTGCA
GGCCTTCATTCCCCAAGTAAGTACGCGCTTTCAACCCTACAAGCACCATA
TCGCATCAAATCGTGCTGATACCTTACCGGTGACCATTTTAAGCAGACAC
CGTTGTCGGAGTTGGCCAGACATGGCAGATCTCGTCAGAGCTCCACGTCC
AGGTGAGCGGGAGGGCCTAGTCAGCGTGCGTGAGGCAGTGTGACTCCTCT
CCCGTCATGTTTCTTTCAGACTTGTGATTCTAAATCATTGCTTTTTTTTC
AGAAGATCGATTGAACGTACGCTTGCCTAGGAGACACGCAAGCTTACGTG
AATGACAATAATTACAATCAATGCCCCTTTTACTCAGTTGCCCGTGCAAC
CTCCCGACGTTCAGGACTCTACTGTCTGATCGTGTATGTTGACAGGGGAT
GAATCATCAAACACATCATTTTATCCATGTATACCCTCGACATGATGCCG
TCCGATTTCTCTGTCGTGCGTCTCCTTGCACCCCACCTCTTTCCACGTCT
CAgcacccatccctcctcgttTCGCCCCCCGCAGGCTCGTCCCCTCTGCC
AACTTCCTCGTCGACTATCCCCCCCCAGGCGAGCGCCGTGATTACCCCCG
TCCCAACCTGGAAGAGACGTCGTCTTCCTTCAAAATCGCAGAGCAGCTCT
CGGAGGAAATCAAGAAGTTTCCCCGCCCGAAGGAAGGCAAGCCCACCGTG
GTCATCGCGGGGGCGGGTTTGGCGGGTCTGAGCACAGCCAAGTACCTGTG
CGACGCGGGGTTCAAGCCCATAGTCCTTGAAGCGCGCGACGTGCTCGGGG
GTAAAGTCTCGGCGTGGCAGGACAAGGATGGGGACTGGATTGAGACGGGG
CTGCACATTTTCTTCGGAGCTTACCCTAACATGATGCGCCTCTTCAAAGA
GCTCAAGATCGAAGAGCGCTTGCAATGGAAGAGCCATTCCATGATTTTCG
CCATGCCAGGCAAACAGGACGCGGAAGGCCGACAGCGCTTCTCCCGCTTC
GACTTCCCATCGTTCCTACCTGCGCCCTTCAACGGCATCCTGGCGATCCT
CCTGAACGACGAGATGCTCACCTGGCCTGAGAAGATCAAATTTGGCATTG
GCCTCCTGCCTGCCATTATCCAAGGGCAGGACTACGTGGAGAAGCAGGAT
TCGCTGTCCGTGAAGCAGTGGATGAAGCAGCAAGGGGTTCCGGACCGCGT
GAACGACGAGGTCTTCATCGCCATGGCGAAGGCCCTCGCCTTCATCGACC
CCGACCAGCTCTCCATGACCATCGTGCTCACGGCGCTCAACCGCTTCCTC
CAGGAGAAAGACGGGTCCAAGATGGCCTTTCTGgacggccccccccccac
ccgcctgTGCGAGCCCATGGTGGAATACATCCGTCAAAACGGGGGAGAGG
TGCACCTGAACGCCCCCGTGCGGGAGATGATGCTGCACCGGGAGTTCCGG
GAGAGCGTCGTGGACGGTTTCCGGCTCCCGAATGGGACGATCGTTCAGGG
AGACCTCTACGTCTCCGCCATGCCCGTGGACCTGGTCAAGAAGGTGATCC
CGAAGCGGATGAAGGAGCGGTGGTCCTATTTCGACCAACTCgacgagctg
gagggggTTCCCGTCATCAACATTCACCTCTGGTTCGACCGGAAACTGAC
CACCGTcgaccacctcctcttctcgcgctcccccctcctgagCGTGTACG
CGGACatgtccaccacctgcaAGGGCTACCAGGACGACGAGAAGAGCATG
CTGGAGCTGGTCTTTGCCCCTGCCAAGGACTGGATCGGGAAATCCGACGA
GGACATTGTGGCCGCCACCATGGAGGAGCTCTACAGGCTTTTCCCCACCG
AGCTCTCGGCGGATGGGAGCAAGGCGAAGCTGGTCAAGAGCGCAGTGGTG
AAGACGCCGCGATCCGTGTACACGCCTCTGccaggaaaggaggcctTCCG
CCCCGATCAGAGGACACCGGTGGGGAATTTCTATCTGGCAGGGGACTACA
CCAAGCAGATCTACTTGGGGTCTATGGAGGGGGCCACTTTGAGTGGGAAA
CTCTGTGCGCTGAAGATCGCACAGGACGAGCAGGAGTGGGACGGTCGAAG
TCAGGCGATGGATCTgatcgcggaggaggaaaagagggcaggaagggcgg
cggaggcggctaTCAAGGTATAAAATTGGAAATCGCTGAGGCAGCACAGA
TACTGGAGATATTTTGCAATGGAAGTTTCCACTTAGAAAATgtgctcgtc
gtcgtcgcaaGGAGtttggaaagaaagaggaggggaaaaaagagggagaa
ggcgctaACAGCACGGAAGATTGGAGGCTTTCCGACTGTAACGAATGTGG
AAGCATGAACGGGCCTGTAGGTTTCAGCGATACGTAAACTGATATATGTC
ACAACAAAAAATTCTTATATAAGGGCGCTGTGAAATGTTTCTATTTCTTG
TCTTTGCTGACTTGGGAAAGCCAGTCAGTGTATGAGTCTGCCTACATCAC
CCGAGACAATCCATCACATGAGGTTAGAAGGCATGAGGTTATTGAATGTT
CTCTAGACAGTCTTCTCTTGCTTAGAGTTTTATCGAGTATATGTATTTTT
AATGAAAAAAGCTGCTTCATGA back to topCoding sequence (CDS) from alignment at CM002469.1:545181..548002+ >rna6803 ID=rna6803|Name=rna6803|organism=Nannochloropsis gaditana|type=CDS|length=5319bp|location=Sequence derived from alignment at CM002469.1:545181..548002+ (Nannochloropsis gaditana)
ATGGCCAAGCTCGGTGTGGCGGTGGCCTCAATATCTGCCCTGTTGGGTTG
CTTCAGTGTGCAGGCCTTCATTCCCCAAACACCGTTGTCGGAGTTGGCCA
GACATGGCAGATCTCGTCAGAGCTCCACGTCCAGGCTCGTCCCCTCTGCC
AACTTCCTCGTCGACTATCCCCCCCCAGGCGAGCGCCGTGATTACCCCCG
TCCCAACCTGGAAGAGACGTCGTCTTCCTTCAAAATCGCAGAGCAGCTCT
CGGAGGAAATCAAGAAGTTTCCCCGCCCGAAGGAAGGCAAGCCCACCGTG
GTCATCGCGGGGGCGGGTTTGGCGGGTCTGAGCACAGCCAAGTACCTGTG
CGACGCGGGGTTCAAGCCCATAGTCCTTGAAGCGCGCGACGTGCTCGGGG
GTAAAGTCTCGGCGTGGCAGGACAAGGATGGGGACTGGATTGAGACGGGG
CTGCACATTTTCTTCGGAGCTTACCCTAACATGATGCGCCTCTTCAAAGA
GCTCAAGATCGAAGAGCGCTTGCAATGGAAGAGCCATTCCATGATTTTCG
CCATGCCAGGCAAACAGGACGCGGAAGGCCGACAGCGCTTCTCCCGCTTC
GACTTCCCATCGTTCCTACCTGCGCCCTTCAACGGCATCCTGGCGATCCT
CCTGAACGACGAGATGCTCACCTGGCCTGAGAAGATCAAATTTGGCATTG
GCCTCCTGCCTGCCATTATCCAAGGGCAGGACTACGTGGAGAAGCAGGAT
TCGCTGTCCGTGAAGCAGTGGATGAAGCAGCAAGGGGTTCCGGACCGCGT
GAACGACGAGGTCTTCATCGCCATGGCGAAGGCCCTCGCCTTCATCGACC
CCGACCAGCTCTCCATGACCATCGTGCTCACGGCGCTCAACCGCTTCCTC
CAGGAGAAAGACGGGTCCAAGATGGCCTTTCTGgacggccccccccccac
ccgcctgTGCGAGCCCATGGTGGAATACATCCGTCAAAACGGGGGAGAGG
TGCACCTGAACGCCCCCGTGCGGGAGATGATGCTGCACCGGGAGTTCCGG
GAGAGCGTCGTGGACGGTTTCCGGCTCCCGAATGGGACGATCGTTCAGGG
AGACCTCTACGTCTCCGCCATGCCCGTGGACCTGGTCAAGAAGGTGATCC
CGAAGCGGATGAAGGAGCGGTGGTCCTATTTCGACCAACTCgacgagctg
gagggggTTCCCGTCATCAACATTCACCTCTGGTTCGACCGGAAACTGAC
CACCGTcgaccacctcctcttctcgcgctcccccctcctgagCGTGTACG
CGGACatgtccaccacctgcaAGGGCTACCAGGACGACGAGAAGAGCATG
CTGGAGCTGGTCTTTGCCCCTGCCAAGGACTGGATCGGGAAATCCGACGA
GGACATTGTGGCCGCCACCATGGAGGAGCTCTACAGGCTTTTCCCCACCG
AGCTCTCGGCGGATGGGAGCAAGGCGAAGCTGGTCAAGAGCGCAGTGGTG
AAGACGCCGCGATCCGTGTACACGCCTCTGccaggaaaggaggcctTCCG
CCCCGATCAGAGGACACCGGTGGGGAATTTCTATCTGGCAGGGGACTACA
CCAAGCAGATCTACTTGGGGTCTATGGAGGGGGCCACTTTGAGTGGGAAA
CTCTGTGCGCTGAAGATCGCACAGGACGAGCAGGAGTGGGACGGTCGAAG
TCAGGCGATGGATCTgatcgcggaggaggaaaagagggcaggaagggcgg
cggaggcggctaTCAAGGTATAAATGGCCAAGCTCGGTGTGGCGGTGGCC
TCAATATCTGCCCTGTTGGGTTGCTTCAGTGTGCAGGCCTTCATTCCCCA
AACACCGTTGTCGGAGTTGGCCAGACATGGCAGATCTCGTCAGAGCTCCA
CGTCCAGGCTCGTCCCCTCTGCCAACTTCCTCGTCGACTATCCCCCCCCA
GGCGAGCGCCGTGATTACCCCCGTCCCAACCTGGAAGAGACGTCGTCTTC
CTTCAAAATCGCAGAGCAGCTCTCGGAGGAAATCAAGAAGTTTCCCCGCC
CGAAGGAAGGCAAGCCCACCGTGGTCATCGCGGGGGCGGGTTTGGCGGGT
CTGAGCACAGCCAAGTACCTGTGCGACGCGGGGTTCAAGCCCATAGTCCT
TGAAGCGCGCGACGTGCTCGGGGGTAAAGTCTCGGCGTGGCAGGACAAGG
ATGGGGACTGGATTGAGACGGGGCTGCACATTTTCTTCGGAGCTTACCCT
AACATGATGCGCCTCTTCAAAGAGCTCAAGATCGAAGAGCGCTTGCAATG
GAAGAGCCATTCCATGATTTTCGCCATGCCAGGCAAACAGGACGCGGAAG
GCCGACAGCGCTTCTCCCGCTTCGACTTCCCATCGTTCCTACCTGCGCCC
TTCAACGGCATCCTGGCGATCCTCCTGAACGACGAGATGCTCACCTGGCC
TGAGAAGATCAAATTTGGCATTGGCCTCCTGCCTGCCATTATCCAAGGGC
AGGACTACGTGGAGAAGCAGGATTCGCTGTCCGTGAAGCAGTGGATGAAG
CAGCAAGGGGTTCCGGACCGCGTGAACGACGAGGTCTTCATCGCCATGGC
GAAGGCCCTCGCCTTCATCGACCCCGACCAGCTCTCCATGACCATCGTGC
TCACGGCGCTCAACCGCTTCCTCCAGGAGAAAGACGGGTCCAAGATGGCC
TTTCTGgacggccccccccccacccgcctgTGCGAGCCCATGGTGGAATA
CATCCGTCAAAACGGGGGAGAGGTGCACCTGAACGCCCCCGTGCGGGAGA
TGATGCTGCACCGGGAGTTCCGGGAGAGCGTCGTGGACGGTTTCCGGCTC
CCGAATGGGACGATCGTTCAGGGAGACCTCTACGTCTCCGCCATGCCCGT
GGACCTGGTCAAGAAGGTGATCCCGAAGCGGATGAAGGAGCGGTGGTCCT
ATTTCGACCAACTCgacgagctggagggggTTCCCGTCATCAACATTCAC
CTCTGGTTCGACCGGAAACTGACCACCGTcgaccacctcctcttctcgcg
ctcccccctcctgagCGTGTACGCGGACatgtccaccacctgcaAGGGCT
ACCAGGACGACGAGAAGAGCATGCTGGAGCTGGTCTTTGCCCCTGCCAAG
GACTGGATCGGGAAATCCGACGAGGACATTGTGGCCGCCACCATGGAGGA
GCTCTACAGGCTTTTCCCCACCGAGCTCTCGGCGGATGGGAGCAAGGCGA
AGCTGGTCAAGAGCGCAGTGGTGAAGACGCCGCGATCCGTGTACACGCCT
CTGccaggaaaggaggcctTCCGCCCCGATCAGAGGACACCGGTGGGGAA
TTTCTATCTGGCAGGGGACTACACCAAGCAGATCTACTTGGGGTCTATGG
AGGGGGCCACTTTGAGTGGGAAACTCTGTGCGCTGAAGATCGCACAGGAC
GAGCAGGAGTGGGACGGTCGAAGTCAGGCGATGGATCTgatcgcggagga
ggaaaagagggcaggaagggcggcggaggcggctaTCAAGGTATAAATGG
CCAAGCTCGGTGTGGCGGTGGCCTCAATATCTGCCCTGTTGGGTTGCTTC
AGTGTGCAGGCCTTCATTCCCCAAACACCGTTGTCGGAGTTGGCCAGACA
TGGCAGATCTCGTCAGAGCTCCACGTCCAGGCTCGTCCCCTCTGCCAACT
TCCTCGTCGACTATCCCCCCCCAGGCGAGCGCCGTGATTACCCCCGTCCC
AACCTGGAAGAGACGTCGTCTTCCTTCAAAATCGCAGAGCAGCTCTCGGA
GGAAATCAAGAAGTTTCCCCGCCCGAAGGAAGGCAAGCCCACCGTGGTCA
TCGCGGGGGCGGGTTTGGCGGGTCTGAGCACAGCCAAGTACCTGTGCGAC
GCGGGGTTCAAGCCCATAGTCCTTGAAGCGCGCGACGTGCTCGGGGGTAA
AGTCTCGGCGTGGCAGGACAAGGATGGGGACTGGATTGAGACGGGGCTGC
ACATTTTCTTCGGAGCTTACCCTAACATGATGCGCCTCTTCAAAGAGCTC
AAGATCGAAGAGCGCTTGCAATGGAAGAGCCATTCCATGATTTTCGCCAT
GCCAGGCAAACAGGACGCGGAAGGCCGACAGCGCTTCTCCCGCTTCGACT
TCCCATCGTTCCTACCTGCGCCCTTCAACGGCATCCTGGCGATCCTCCTG
AACGACGAGATGCTCACCTGGCCTGAGAAGATCAAATTTGGCATTGGCCT
CCTGCCTGCCATTATCCAAGGGCAGGACTACGTGGAGAAGCAGGATTCGC
TGTCCGTGAAGCAGTGGATGAAGCAGCAAGGGGTTCCGGACCGCGTGAAC
GACGAGGTCTTCATCGCCATGGCGAAGGCCCTCGCCTTCATCGACCCCGA
CCAGCTCTCCATGACCATCGTGCTCACGGCGCTCAACCGCTTCCTCCAGG
AGAAAGACGGGTCCAAGATGGCCTTTCTGgacggccccccccccacccgc
ctgTGCGAGCCCATGGTGGAATACATCCGTCAAAACGGGGGAGAGGTGCA
CCTGAACGCCCCCGTGCGGGAGATGATGCTGCACCGGGAGTTCCGGGAGA
GCGTCGTGGACGGTTTCCGGCTCCCGAATGGGACGATCGTTCAGGGAGAC
CTCTACGTCTCCGCCATGCCCGTGGACCTGGTCAAGAAGGTGATCCCGAA
GCGGATGAAGGAGCGGTGGTCCTATTTCGACCAACTCgacgagctggagg
gggTTCCCGTCATCAACATTCACCTCTGGTTCGACCGGAAACTGACCACC
GTcgaccacctcctcttctcgcgctcccccctcctgagCGTGTACGCGGA
CatgtccaccacctgcaAGGGCTACCAGGACGACGAGAAGAGCATGCTGG
AGCTGGTCTTTGCCCCTGCCAAGGACTGGATCGGGAAATCCGACGAGGAC
ATTGTGGCCGCCACCATGGAGGAGCTCTACAGGCTTTTCCCCACCGAGCT
CTCGGCGGATGGGAGCAAGGCGAAGCTGGTCAAGAGCGCAGTGGTGAAGA
CGCCGCGATCCGTGTACACGCCTCTGccaggaaaggaggcctTCCGCCCC
GATCAGAGGACACCGGTGGGGAATTTCTATCTGGCAGGGGACTACACCAA
GCAGATCTACTTGGGGTCTATGGAGGGGGCCACTTTGAGTGGGAAACTCT
GTGCGCTGAAGATCGCACAGGACGAGCAGGAGTGGGACGGTCGAAGTCAG
GCGATGGATCTgatcgcggaggaggaaaagagggcaggaagggcggcgga
ggcggctaTCAAGGTATAA back to top
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