EWM23892.1, cds6787 (CDS) Nannochloropsis gaditana

Overview
NameEWM23892.1
Unique Namecds6787
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:545319..545396 +
Alignment locationCM002469.1:545477..545532 +
Alignment locationCM002469.1:545915..547553 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23892.1
Productphytoene desaturase
Orig transcript idgnl|cribi|Naga_100161g10.9661.mrna
GenePDS
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:545319..545396 +
CM002469.1supercontigCM002469.1:545477..545532 +
CM002469.1supercontigCM002469.1:545915..547553 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0016117carotenoid biosynthetic process
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR014102Phytoene_desaturase
IPR002937Amino_oxidase
IPR001613Flavin_amine_oxidase
Homology
BLAST of EWM23892.1 vs. NCBI_GenBank
Match: gi|585105173|gb|EWM23892.1| (phytoene desaturase [Nannochloropsis gaditana])

HSP 1 Score: 1214.13 bits (3140), Expect = 0.000e+0
Identity = 590/590 (100.00%), Postives = 590/590 (100.00%), Query Frame = 0
Query:    1 MAKLGVAVASISALLGCFSVQAFIPQTPLSELARHGRSRQSSTSRLVPSANFLVDYPPPGERRDYPRPNLEETSSSFKIAEQLSEEIKKFPRPKEGKPTVVIAGAGLAGLSTAKYLCDAGFKPIVLEARDVLGGKVSAWQDKDGDWIETGLHIFFGAYPNMMRLFKELKIEERLQWKSHSMIFAMPGKQDAEGRQRFSRFDFPSFLPAPFNGILAILLNDEMLTWPEKIKFGIGLLPAIIQGQDYVEKQDSLSVKQWMKQQGVPDRVNDEVFIAMAKALAFIDPDQLSMTIVLTALNRFLQEKDGSKMAFLDGPPPTRLCEPMVEYIRQNGGEVHLNAPVREMMLHREFRESVVDGFRLPNGTIVQGDLYVSAMPVDLVKKVIPKRMKERWSYFDQLDELEGVPVINIHLWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKGYQDDEKSMLELVFAPAKDWIGKSDEDIVAATMEELYRLFPTELSADGSKAKLVKSAVVKTPRSVYTPLPGKEAFRPDQRTPVGNFYLAGDYTKQIYLGSMEGATLSGKLCALKIAQDEQEWDGRSQAMDLIAEEEKRAGRAAEAAIKV 590
            MAKLGVAVASISALLGCFSVQAFIPQTPLSELARHGRSRQSSTSRLVPSANFLVDYPPPGERRDYPRPNLEETSSSFKIAEQLSEEIKKFPRPKEGKPTVVIAGAGLAGLSTAKYLCDAGFKPIVLEARDVLGGKVSAWQDKDGDWIETGLHIFFGAYPNMMRLFKELKIEERLQWKSHSMIFAMPGKQDAEGRQRFSRFDFPSFLPAPFNGILAILLNDEMLTWPEKIKFGIGLLPAIIQGQDYVEKQDSLSVKQWMKQQGVPDRVNDEVFIAMAKALAFIDPDQLSMTIVLTALNRFLQEKDGSKMAFLDGPPPTRLCEPMVEYIRQNGGEVHLNAPVREMMLHREFRESVVDGFRLPNGTIVQGDLYVSAMPVDLVKKVIPKRMKERWSYFDQLDELEGVPVINIHLWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKGYQDDEKSMLELVFAPAKDWIGKSDEDIVAATMEELYRLFPTELSADGSKAKLVKSAVVKTPRSVYTPLPGKEAFRPDQRTPVGNFYLAGDYTKQIYLGSMEGATLSGKLCALKIAQDEQEWDGRSQAMDLIAEEEKRAGRAAEAAIKV
Sbjct:    1 MAKLGVAVASISALLGCFSVQAFIPQTPLSELARHGRSRQSSTSRLVPSANFLVDYPPPGERRDYPRPNLEETSSSFKIAEQLSEEIKKFPRPKEGKPTVVIAGAGLAGLSTAKYLCDAGFKPIVLEARDVLGGKVSAWQDKDGDWIETGLHIFFGAYPNMMRLFKELKIEERLQWKSHSMIFAMPGKQDAEGRQRFSRFDFPSFLPAPFNGILAILLNDEMLTWPEKIKFGIGLLPAIIQGQDYVEKQDSLSVKQWMKQQGVPDRVNDEVFIAMAKALAFIDPDQLSMTIVLTALNRFLQEKDGSKMAFLDGPPPTRLCEPMVEYIRQNGGEVHLNAPVREMMLHREFRESVVDGFRLPNGTIVQGDLYVSAMPVDLVKKVIPKRMKERWSYFDQLDELEGVPVINIHLWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKGYQDDEKSMLELVFAPAKDWIGKSDEDIVAATMEELYRLFPTELSADGSKAKLVKSAVVKTPRSVYTPLPGKEAFRPDQRTPVGNFYLAGDYTKQIYLGSMEGATLSGKLCALKIAQDEQEWDGRSQAMDLIAEEEKRAGRAAEAAIKV 590          
BLAST of EWM23892.1 vs. NCBI_GenBank
Match: gi|299472937|emb|CBN77338.1| (Phytoene desaturase, chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 726.472 bits (1874), Expect = 0.000e+0
Identity = 358/540 (66.30%), Postives = 426/540 (78.89%), Query Frame = 0
Query:   19 SVQAFI--PQTPLSELARHGRSRQSSTSRLVPSANFLVDYPPPGERRDYPRPNLEETSSSFKIAEQLSEEIKKFPRPKEGKPTVVIAGAGLAGLSTAKYLCDAGFKPIVLEARDVLGGKVSAWQDKDGDWIETGLHIFFGAYPNMMRLFKELKIEERLQWKSHSMIFAMPGKQDAEGRQRFSRFDFPSFLPAPFNGILAILLNDEMLTWPEKIKFGIGLLPAIIQGQDYVEKQDSLSVKQWMKQQGVPDRVNDEVFIAMAKALAFIDPDQLSMTIVLTALNRFLQEKDGSKMAFLDGPPPTRLCEPMVEYIRQNGGEVHLNAPVREMMLHREFRESVVDGFRLPNGTIVQGDLYVSAMPVDLVKKVIPKRMKERWS---YFDQLDELEGVPVINIHLWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKGYQDDEKSMLELVFAPAKDWIGKSDEDIVAATMEELYRLFPTELSADGSKAKLVKSAVVKTPRSVYTPLPGKEAFRPDQRTPVGNFYLAGDYTKQIYLGSMEGATLSGKLCA 553
            ++ AF+  P T  + +   G +RQS+  R   S+  + D+P PGER+DYPRP LEETS + + +   S+     PRP+      VI GAGLAGLS AKYL DAG KP+VLEARDVLGGKV+AWQDKDGDW+ETGLHIFFGAYPN+ ++F EL I +RLQWKSHSMIFAMPG+Q A+G QRFSRF+FP+ LPAP NG++AILLN+EMLT+PEKI+FGIGLLPAI+ GQ YVE+ DSL+V QWMK+QGVPDRVNDEVFIAMAKAL FIDP+ LSMT+VLTALNRFLQE  GSKMAFLDGPPPTRLC+PM +++   GGE+ +   + E++L+    +  V G ++ +G+ V  D YVS MPVD++K  +P    E W    YF++L+ L GVPVINIH+WFDRKLTTVDHLLFSRSPLLSVYADMS TCKGY+DD+KSMLELVFAPAKDWIGKSDEDI+ ATM ELYRLFP ELS DGS AKL+KSAVVKTP SVY    G+E +RP Q TPV NF+LAG +TKQ YL SMEGAT SGKL A
Sbjct:   18 TISAFVLPPATSFTGVGLSGSARQSAIRRNGVSS-MIFDFPAPGERKDYPRPPLEETSENQRESAAFSQAFLDMPRPERPLKVAVI-GAGLAGLSCAKYLSDAGHKPVVLEARDVLGGKVAAWQDKDGDWVETGLHIFFGAYPNVNQMFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPALLPAPLNGLVAILLNNEMLTFPEKIQFGIGLLPAILFGQKYVEECDSLTVSQWMKKQGVPDRVNDEVFIAMAKALNFIDPENLSMTVVLTALNRFLQETHGSKMAFLDGPPPTRLCQPMADHMLARGGELRMEQRISEILLN---DDKTVKGLKMQDGSTVVADAYVSTMPVDILKLALP----EAWRPMPYFEKLNGLNGVPVINIHMWFDRKLTTVDHLLFSRSPLLSVYADMSLTCKGYRDDDKSMLELVFAPAKDWIGKSDEDIIEATMGELYRLFPNELSKDGSGAKLLKSAVVKTPLSVYEATAGRELYRPVQTTPVSNFFLAGCFTKQKYLASMEGATFSGKLAA 548          
BLAST of EWM23892.1 vs. NCBI_GenBank
Match: gi|159465297|ref|XP_001690859.1| (phytoene desaturase [Chlamydomonas reinhardtii] >gi|47779187|gb|AAT38476.1| chloroplast phytoene desaturase precursor [Chlamydomonas reinhardtii] >gi|158279545|gb|EDP05305.1| phytoene desaturase [Chlamydomonas reinhardtii])

HSP 1 Score: 701.049 bits (1808), Expect = 0.000e+0
Identity = 350/498 (70.28%), Postives = 404/498 (81.12%), Query Frame = 0
Query:   63 RDYPRPNLEETSSSFKIAEQLSEEIKKFPRPKEGKP-TVVIAGAGLAGLSTAKYLCDAGFKPIVLEARDVLGGKVSAWQDKDGDWIETGLHIFFGAYPNMMRLFKELKIEERLQWKSHSMIFAMPGKQDAEGRQRFSRFDFPSFLPAPFNGILAILLNDEMLTWPEKIKFGIGLLPAIIQGQDYVEKQDSLSVKQWMKQQGVPDRVNDEVFIAMAKALAFIDPDQLSMTIVLTALNRFLQEKDGSKMAFLDGPPPTRLCEPMVEYIRQNGGEVHLNAPVREMMLHREFRESVVDGFRLPNGTIVQGDLYVSAMPVDLVKKVIPKRMKERWSYFDQLDELEGVPVINIHLWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKGYQDDEKSMLELVFAPAKDWIGKSDEDIVAATMEELYRLFPTELSADGSKAKLVKSAVVKTPRSVYTPLPGKEAFRPDQRTPVGNFYLAGDYTKQIYLGSMEGATLSGKLCALKIAQD 559
            RDYPRP  E T+ +F+ A+ LS ++K  PRP   KP  VVIAGAGLAGLS AKYL DAG  PIVLE RDVLGGKV+AW+D+DGDW ETGLHIFFGAYPNMM +FKEL IEERLQWK HSMIFAMP   D+ G   FSRFDFP  +PAPFNG+ AIL N++MLTWPEKI+F IGLLPAII GQ YVE+QD LSV QWM+QQGVPDRVN+EVFIAMAKALAFIDPD+LSMT+VLTALNRFLQE+ GSKMAFLDG PP RLC+PMV++    GGE+ +NA V++++L+ +     V  ++L  G +V+GDLY+SAMPVD++K ++P + K    YF QL ELEGVPVINIH+WFDRKLTTVDHLLFSRSPLLSVYADMSTTCK Y D EKSMLELVFAPAKDWIG+SDEDI+AATM EL RLFPTE+ AD S AK+ K  V+KTP SVY    G+EAFRP QRTP+ NF+LAGD+TKQ YL SMEGA  SGKL A +I  D
Sbjct:   41 RDYPRPAFE-TAETFQEAKALSSKLKDAPRP--AKPLKVVIAGAGLAGLSAAKYLSDAGHHPIVLEGRDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMMNVFKELNIEERLQWKEHSMIFAMP---DSPGE--FSRFDFPD-IPAPFNGVFAILRNNQMLTWPEKIQFAIGLLPAIIFGQKYVEEQDHLSVTQWMRQQGVPDRVNEEVFIAMAKALAFIDPDRLSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPMVDHFTARGGELKMNARVKDIVLNDD---GSVKHYKLTTGEVVEGDLYMSAMPVDILKLLVPDQWKPN-PYFSQLKELEGVPVINIHIWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKEYYDTEKSMLELVFAPAKDWIGRSDEDIIAATMTELERLFPTEIKADQSLAKIRKYKVIKTPLSVYESRAGREAFRPSQRTPIKNFFLAGDFTKQKYLASMEGAIFSGKLAAEQIVND 525          
BLAST of EWM23892.1 vs. NCBI_GenBank
Match: gi|302833183|ref|XP_002948155.1| (hypothetical protein VOLCADRAFT_88495 [Volvox carteri f. nagariensis] >gi|300266375|gb|EFJ50562.1| hypothetical protein VOLCADRAFT_88495 [Volvox carteri f. nagariensis])

HSP 1 Score: 692.575 bits (1786), Expect = 0.000e+0
Identity = 346/501 (69.06%), Postives = 404/501 (80.64%), Query Frame = 0
Query:   63 RDYPRPNLEETSSSFKIAEQLSEEIKKFPRPKEGKP-TVVIAGAGLAGLSTAKYLCDAGFKPIVLEARDVLGGKVSAWQDKDGDWIETGLHIFFGAYPNMMRLFKELKIEERLQWKSHSMIFAMPGKQDAEGRQRFSRFDFPSFLPAPFNGILAILLNDEMLTWPEKIKFGIGLLPAIIQGQDYVEKQDSLSVKQWMKQQGVPDRVNDEVFIAMAKALAFIDPDQLSMTIVLTALNRFLQEKDGSKMAFLDGPPPTRLCEPMVEYIRQNGGEVHLNAPVREMMLHREFRESVVDGFRLPNGTIVQGDLYVSAMPVDLVKKVIPKRMKERWS---YFDQLDELEGVPVINIHLWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKGYQDDEKSMLELVFAPAKDWIGKSDEDIVAATMEELYRLFPTELSADGSKAKLVKSAVVKTPRSVYTPLPGKEAFRPDQRTPVGNFYLAGDYTKQIYLGSMEGATLSGKLCALKIAQD 559
            RDYP+P  E T+ +F+ A+ LS ++K  PRP   KP  VVIAGAGLAGLS AKYL DAG +PIVLE RDVLGGKV+AW+D+DGDW ETGLHIFFGAYPNMM +FKEL IE+RLQWK HSMIFAMP          FSRFDFP  +PAP+NGI+AIL N++MLTWPEKI+F +GLLPAII GQ YVE+QD L+V +WM++Q VPDRVNDEVFIAMAKALAFI PD+LSMT+VLTALNRFLQE+ GSKMAFLDG PP RLC+PMV+Y    GGE+ +NA +R++ L+ +     V  FRL NG +V+GDLY+SA+PVD++K V+P    E+W    YF QL ELEGVPVINIH+WFDRKL TVDHLLFSRSPLLSVYADMSTTCK Y D++KSMLELVFAPAK+WIG+SDEDI+AATM+EL RLFPTE+ AD S AK+ K  VVKTP SVY    G+EAFRP QRTP+ NFYLAGD+TKQ YL SMEGA  SGKL A KI +D
Sbjct:   41 RDYPKPAFE-TAETFQEAQALSAKLKNAPRPV--KPLKVVIAGAGLAGLSAAKYLADAGHQPIVLEGRDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMMNIFKELNIEDRLQWKEHSMIFAMPNLPG-----EFSRFDFPD-IPAPWNGIIAILRNNQMLTWPEKIQFALGLLPAIIFGQKYVEEQDHLTVTEWMRKQNVPDRVNDEVFIAMAKALAFIGPDRLSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPMVDYFTARGGEIKMNARLRDIELNDD---GSVKQFRLTNGEVVEGDLYMSAVPVDILKLVVP----EQWQPMPYFAQLKELEGVPVINIHIWFDRKLITVDHLLFSRSPLLSVYADMSTTCKEYADNDKSMLELVFAPAKEWIGRSDEDIIAATMKELERLFPTEIKADQSLAKIRKYKVVKTPLSVYESRSGREAFRPSQRTPISNFYLAGDFTKQKYLASMEGAIFSGKLAAEKIVED 525          
BLAST of EWM23892.1 vs. NCBI_GenBank
Match: gi|1004147993|gb|KXZ55966.1| (hypothetical protein GPECTOR_2g1518 [Gonium pectorale])

HSP 1 Score: 686.411 bits (1770), Expect = 0.000e+0
Identity = 347/511 (67.91%), Postives = 402/511 (78.67%), Query Frame = 0
Query:   59 PGER------RDYPRPNLEETSSSFKIAEQLSEEIKKFPRPKEGKP-TVVIAGAGLAGLSTAKYLCDAGFKPIVLEARDVLGGKVSAWQDKDGDWIETGLHIFFGAYPNMMRLFKELKIEERLQWKSHSMIFAMPGKQDAEGRQRFSRFDFPSFLPAPFNGILAILLNDEMLTWPEKIKFGIGLLPAIIQGQDYVEKQDSLSVKQWMKQQGVPDRVNDEVFIAMAKALAFIDPDQLSMTIVLTALNRFLQEKDGSKMAFLDGPPPTRLCEPMVEYIRQNGGEVHLNAPVREMMLHREFRESVVDGFRLPNGTIVQGDLYVSAMPVDLVKKVIPKRMKERWS---YFDQLDELEGVPVINIHLWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKGYQDDEKSMLELVFAPAKDWIGKSDEDIVAATMEELYRLFPTELSADGSKAKLVKSAVVKTPRSVYTPLPGKEAFRPDQRTPVGNFYLAGDYTKQIYLGSMEGATLSGKLCALKIAQD 559
            PG R      RDYPRP  E T+ +F+ A+ LS +++  PRP   KP  VVIAGAGLAGLS AKYL DAG  PIVLE RDVLGGKV+AW+D+DGDW ETGLHIFFGAYPNMM +FKEL IEERLQWK HSMIFAMP          FSRFDFP  +PAP+NGI+AIL N++MLTWPEKI+F +GLLPAII GQ YVE+QDSL+V +WM++Q VPDRVNDEVFIAMAKALAFI PD+LSMT+VLTALNRFLQE+ GSKMAFLDG PP RLC+PMV++ +  GGE+ +NA ++ + L+ +     V  F+L NG IVQGDLY+SAMPVD++K ++P    E W    YF QL ELEGVPVINIH+WFDRKLTTVDHLLFSRSPLLSVYADMSTTCK Y D EKSMLELVFAPAK+WIG+SD+DI+ ATM EL RLFPTE+ AD S AK+ K  V+KTP SVY    G+EAFRP QR+P+ NFYLAGD+TKQ YL SMEGA  SGKL A  I  D
Sbjct:   31 PGRRQLEVVARDYPRPAFE-TAETFQEAQALSAKLRNAPRP--AKPLKVVIAGAGLAGLSAAKYLSDAGHHPIVLEGRDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMMNIFKELNIEERLQWKEHSMIFAMPNLPG-----EFSRFDFPD-IPAPWNGIIAILRNNQMLTWPEKIQFALGLLPAIIFGQKYVEEQDSLTVTEWMRKQNVPDRVNDEVFIAMAKALAFIGPDRLSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPMVDHFQARGGELKMNARLQRIELNED---GSVKHFQLTNGEIVQGDLYMSAMPVDILKLLVP----EPWRPMPYFSQLKELEGVPVINIHIWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKEYYDTEKSMLELVFAPAKEWIGRSDQDIIDATMTELERLFPTEIRADQSLAKIRKYKVIKTPLSVYESRAGREAFRPSQRSPISNFYLAGDFTKQKYLASMEGAIFSGKLAAEAIVDD 525          
BLAST of EWM23892.1 vs. NCBI_GenBank
Match: gi|558761522|gb|AHA90853.1| (phytoene desaturase [Ulva pertusa])

HSP 1 Score: 671.774 bits (1732), Expect = 0.000e+0
Identity = 333/497 (67.00%), Postives = 392/497 (78.87%), Query Frame = 0
Query:   63 RDYPRPNLEETSSSFKIAEQLSEEIKKFPRPKEGKPTVVIAGAGLAGLSTAKYLCDAGFKPIVLEARDVLGGKVSAWQDKDGDWIETGLHIFFGAYPNMMRLFKELKIEERLQWKSHSMIFAMPGKQDAEGRQRFSRFDFPSFLPAPFNGILAILLNDEMLTWPEKIKFGIGLLPAIIQGQDYVEKQDSLSVKQWMKQQGVPDRVNDEVFIAMAKALAFIDPDQLSMTIVLTALNRFLQEKDGSKMAFLDGPPPTRLCEPMVEYIRQNGGEVHLNAPVREMMLHREFRESVVDGFRLPNGTIVQGDLYVSAMPVDLVKKVIPKRMKERWS---YFDQLDELEGVPVINIHLWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKGYQDDEKSMLELVFAPAKDWIGKSDEDIVAATMEELYRLFPTELSADGSKAKLVKSAVVKTPRSVYTPLPGKEAFRPDQRTPVGNFYLAGDYTKQIYLGSMEGATLSGKLCALKI 556
            RDYP+PN E    +F+ A+QLS+ IK  PRP+  K   VI GAGLAGLS AKYL DAG  P+VLE RDVLGGKV+AW+D+DGDW ETGLHIFFGAY NMM +F EL IE+RLQWK HSMIFAMP   D  G   FSRFDFP  LPAP NG+ AIL NDEMLTWPEKI+F +GLLPAII GQ YVE QD L+V +WM++Q VPDRVNDEVFIAMAKAL FIDPD LSMT+VLTALNRFLQE+ GSKMAFLDG PP RLC+PMV+Y++ +GG+V +N  V+E++L+ +   S V   ++ +G+IV+ DLYVS+ PVD++K ++P    + WS   +F Q+D LEGVPVINIH+WFD KLTTVDHLLFSRSPLLSVYADMSTTC+ Y+D  KSMLELVFAPAKDWIGKSDE I+AATM EL RLFPTE+ AD S AK++K  V+KT RSVY    G+E +RP Q+TP+ NFYL G YTKQ YL SMEGA  SGKL A +I
Sbjct:   32 RDYPKPNFE-VGGTFQEAKQLSDYIKNAPRPQSPKKVAVI-GAGLAGLSAAKYLTDAGHTPVVLEGRDVLGGKVAAWKDEDGDWYETGLHIFFGAYANMMNIFSELNIEDRLQWKEHSMIFAMP---DEPGE--FSRFDFPD-LPAPINGVTAILRNDEMLTWPEKIQFALGLLPAIIFGQKYVEDQDKLTVTEWMRKQNVPDRVNDEVFIAMAKALNFIDPDSLSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPMVDYVKDHGGDVQVNQRVKEIVLNTD---STVKHLQMTDGSIVEADLYVSSAPVDIMKLLLP----DAWSKMAFFKQMDGLEGVPVINIHIWFDTKLTTVDHLLFSRSPLLSVYADMSTTCREYEDANKSMLELVFAPAKDWIGKSDEQIIAATMLELERLFPTEVKADESLAKILKYKVIKTARSVYEATAGREDYRPTQKTPIDNFYLCGCYTKQKYLASMEGAIFSGKLAAREI 513          
BLAST of EWM23892.1 vs. NCBI_GenBank
Match: gi|54654427|gb|AAV37090.1| (phytoene desaturase [Haematococcus lacustris])

HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0
Identity = 333/508 (65.55%), Postives = 400/508 (78.74%), Query Frame = 0
Query:   63 RDYPRPNLEETSSSFKIAEQLSEEIKKFPRPKEGKPT-VVIAGAGLAGLSTAKYLCDAGFKPIVLEARDVLGGKVSAWQDKDGDWIETGLHIFFGAYPNMMRLFKELKIEERLQWKSHSMIFAMPGKQDAEGRQRFSRFDFPSFLPAPFNGILAILLNDEMLTWPEKIKFGIGLLPAIIQGQDYVEKQDSLSVKQWMKQQGVPDRVNDEVFIAMAKALAFIDPDQLSMTIVLTALNRFLQEKDGSKMAFLDGPPPTRLCEPMVEYIRQNGGEVHLNAPVREMMLHREFRESVVDGFRLPNGTIVQGDLYVSAMPVDLVKKVIPKRMKERWS---YFDQLDELEGVPVINIHLWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKGYQDDEKSMLELVFAPAKDWIGKSDEDIVAATMEELYRLFPTELSADGSKAKLVKSAVVKTPRSVYTPLPGKEAFRPDQRTPVGNFYLAGDYTKQIYLGSMEGATLSGKLCALKIAQDEQEWDGR 566
            +DYP P+ + +S +++ A  LS +++  PRP   KP  VVIAGAGLAGLS AKYL DAG  P+VLE RDVLGGKV+AW+D+DGDW ETGLHIFFGAYPN+  LFKEL I++RLQWK HSMIFAMP   DA G   FSRFDFP  LPAP+NGI+AIL N++ML+WPEKI+F IGLLPAII GQ Y E+QD L+V +WM++QGVPDRVN+EVFIAMAKAL FI+PD LSMT+VLTALNRFLQE+ GSKMAFLDG PP RLC+PMV+Y +  GG++  N+ V++++L+ +     V    L NG  V+GDLY+SAMPVD++K ++P    + W+   YF QL+ LEGVPVINIH+WFDRKLTTVDHLLFSRSPLLSVYADMSTTCK Y D++KSMLELVFAPAK+WIG+ DE+I+AATM EL RLFPTE+ AD S AK++K  VVKTP SVY    G+E FRP QR+P+ NFYLAGDYTKQ YL SMEGA  SGKL    I +D   W  R
Sbjct:   40 KDYPTPDFQ-SSDTYQEALSLSTKLRNAPRP--AKPLRVVIAGAGLAGLSAAKYLADAGHHPVVLEGRDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNIQNLFKELGIQDRLQWKEHSMIFAMP---DAPGE--FSRFDFPE-LPAPWNGIIAILRNNQMLSWPEKIRFAIGLLPAIIFGQRYCEEQDELTVTEWMRKQGVPDRVNEEVFIAMAKALNFINPDDLSMTVVLTALNRFLQEQHGSKMAFLDGAPPERLCQPMVDYFKARGGDLMFNSRVKQIVLNDD---KSVKHLALTNGQTVEGDLYISAMPVDIMKILMP----DPWASMPYFKQLNGLEGVPVINIHIWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKEYADEKKSMLELVFAPAKEWIGRPDEEIIAATMTELERLFPTEVRADQSMAKILKYKVVKTPLSVYKSTAGREKFRPTQRSPISNFYLAGDYTKQKYLASMEGAVFSGKLVTEAIVED---WSAR 528          
BLAST of EWM23892.1 vs. NCBI_GenBank
Match: gi|860211653|gb|AKO71907.1| (norflurazon resistant phytoene desaturase [Cloning vector pBPL] >gi|860211656|gb|AKO71909.1| norflurazon resistant phytoene desaturase [Cloning vector pBPS])

HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0
Identity = 333/508 (65.55%), Postives = 399/508 (78.54%), Query Frame = 0
Query:   63 RDYPRPNLEETSSSFKIAEQLSEEIKKFPRPKEGKPT-VVIAGAGLAGLSTAKYLCDAGFKPIVLEARDVLGGKVSAWQDKDGDWIETGLHIFFGAYPNMMRLFKELKIEERLQWKSHSMIFAMPGKQDAEGRQRFSRFDFPSFLPAPFNGILAILLNDEMLTWPEKIKFGIGLLPAIIQGQDYVEKQDSLSVKQWMKQQGVPDRVNDEVFIAMAKALAFIDPDQLSMTIVLTALNRFLQEKDGSKMAFLDGPPPTRLCEPMVEYIRQNGGEVHLNAPVREMMLHREFRESVVDGFRLPNGTIVQGDLYVSAMPVDLVKKVIPKRMKERWS---YFDQLDELEGVPVINIHLWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKGYQDDEKSMLELVFAPAKDWIGKSDEDIVAATMEELYRLFPTELSADGSKAKLVKSAVVKTPRSVYTPLPGKEAFRPDQRTPVGNFYLAGDYTKQIYLGSMEGATLSGKLCALKIAQDEQEWDGR 566
            +DYP P+ + +S +++ A  LS +++  PRP   KP  VVIAGAGLAGLS AKYL DAG  P+VLE RDVLGGKV+AW+D+DGDW ETGLHIFFGAYPN+  LFKEL I++RLQWK HSMIFAMP   DA G   FSRFDFP  LPAP+NGI+AIL N++ML+WPEKI+F IGLLPAII GQ Y E+QD L+V +WM++QGVPDRVN+EVFIAMAKAL FI+PD LSMT+VLTALNRFLQE+ GSKMAFLDG PP RLC+PMV+Y +  GG++  N+ V++++L+ +     V    L NG  V+GDLY+SAMPVD++K ++P    + W+   YF QL+ LEGVPVINIH+WFDRKLTTVDHLLFSRSPLLSVYADMSTTCK Y DD+KSMLELVFAPAK+WIG+ DE+I+AATM EL RLFPTE+ AD S AK++K  VVKTP SVY    G+E FRP QR+P+ NFYLAGDYTKQ Y  SMEGA  SGKL    I +D   W  R
Sbjct:   40 KDYPTPDFQ-SSDTYQEALSLSTKLRNAPRP--AKPLRVVIAGAGLAGLSAAKYLADAGHHPVVLEGRDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNIQNLFKELGIQDRLQWKEHSMIFAMP---DAPGE--FSRFDFPE-LPAPWNGIIAILRNNQMLSWPEKIRFAIGLLPAIIFGQRYCEEQDELTVTEWMRKQGVPDRVNEEVFIAMAKALNFINPDDLSMTVVLTALNRFLQEQHGSKMAFLDGAPPERLCQPMVDYFKARGGDLMFNSRVKQIVLNDD---KSVKHLALTNGQTVEGDLYISAMPVDIMKILMP----DPWASMPYFKQLNGLEGVPVINIHIWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKEYADDKKSMLELVFAPAKEWIGRPDEEIIAATMTELERLFPTEVRADQSMAKILKYKVVKTPLSVYKSTAGREKFRPTQRSPISNFYLAGDYTKQKYRASMEGAVFSGKLVTEAIVED---WSAR 528          
BLAST of EWM23892.1 vs. NCBI_GenBank
Match: gi|860206513|gb|AKO71906.1| (phytoene desaturase [Haematococcus lacustris])

HSP 1 Score: 664.84 bits (1714), Expect = 0.000e+0
Identity = 333/508 (65.55%), Postives = 399/508 (78.54%), Query Frame = 0
Query:   63 RDYPRPNLEETSSSFKIAEQLSEEIKKFPRPKEGKPT-VVIAGAGLAGLSTAKYLCDAGFKPIVLEARDVLGGKVSAWQDKDGDWIETGLHIFFGAYPNMMRLFKELKIEERLQWKSHSMIFAMPGKQDAEGRQRFSRFDFPSFLPAPFNGILAILLNDEMLTWPEKIKFGIGLLPAIIQGQDYVEKQDSLSVKQWMKQQGVPDRVNDEVFIAMAKALAFIDPDQLSMTIVLTALNRFLQEKDGSKMAFLDGPPPTRLCEPMVEYIRQNGGEVHLNAPVREMMLHREFRESVVDGFRLPNGTIVQGDLYVSAMPVDLVKKVIPKRMKERWS---YFDQLDELEGVPVINIHLWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKGYQDDEKSMLELVFAPAKDWIGKSDEDIVAATMEELYRLFPTELSADGSKAKLVKSAVVKTPRSVYTPLPGKEAFRPDQRTPVGNFYLAGDYTKQIYLGSMEGATLSGKLCALKIAQDEQEWDGR 566
            +DYP P+ + +S +++ A  LS +++  PRP   KP  VVIAGAGLAGLS AKYL DAG  P+VLE RDVLGGKV+AW+D+DGDW ETGLHIFFGAYPN+  LFKEL I++RLQWK HSMIFAMP   DA G   FSRFDFP  LPAP+NGI+AIL N++ML+WPEKI+F IGLLPAII GQ Y E+QD L+V +WM++QGVPDRVN+EVFIAMAKAL FI+PD LSMT+VLTALNRFLQE+ GSKMAFLDG PP RLC+PMV+Y +  GG++  N+ V++++L+ +     V    L NG  V+GDLY+SAMPVD++K ++P    + W+   YF QL+ LEGVPVINIH+WFDRKLTTVDHLLFSRSPLLSVYADMSTTCK Y DD+KSMLELVFAPAK+WIG+ DE+I+AATM EL RLFPTE+ AD S AK++K  VVKTP SVY    G+E FRP QR+ + NFYLAGDYTKQ YL SMEGA  SGKL    I +D   W  R
Sbjct:   40 KDYPTPDFQ-SSDTYQEALSLSTKLRNAPRP--AKPLRVVIAGAGLAGLSAAKYLADAGHHPVVLEGRDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNIQNLFKELGIQDRLQWKEHSMIFAMP---DAPGE--FSRFDFPE-LPAPWNGIIAILRNNQMLSWPEKIRFAIGLLPAIIFGQRYCEEQDELTVTEWMRKQGVPDRVNEEVFIAMAKALNFINPDDLSMTVVLTALNRFLQEQHGSKMAFLDGAPPERLCQPMVDYFKARGGDLMFNSRVKQIVLNDD---KSVKHLALTNGQTVEGDLYISAMPVDIMKILMP----DPWASMPYFKQLNGLEGVPVINIHIWFDRKLTTVDHLLFSRSPLLSVYADMSTTCKEYADDKKSMLELVFAPAKEWIGRPDEEIIAATMTELERLFPTEVRADQSMAKILKYKVVKTPLSVYKSTAGREKFRPTQRSSISNFYLAGDYTKQKYLASMEGAVFSGKLVTEAIVED---WSAR 528          
BLAST of EWM23892.1 vs. NCBI_GenBank
Match: gi|1012104788|ref|XP_015958360.1| (phytoene dehydrogenase, chloroplastic/chromoplastic [Arachis duranensis])

HSP 1 Score: 664.455 bits (1713), Expect = 0.000e+0
Identity = 340/541 (62.85%), Postives = 402/541 (74.31%), Query Frame = 0
Query:   37 RSRQSSTSRLV-------PSANFLVDYPPPGERRDYPRPNLEETSSSFKIAEQLSEEIKKFPRPKEGKP-TVVIAGAGLAGLSTAKYLCDAGFKPIVLEARDVLGGKVSAWQDKDGDWIETGLHIFFGAYPNMMRLFKELKIEERLQWKSHSMIFAMPGKQDAEGRQRFSRFDFPSFLPAPFNGILAILLNDEMLTWPEKIKFGIGLLPAIIQGQDYVEKQDSLSVKQWMKQQGVPDRVNDEVFIAMAKALAFIDPDQLSMTIVLTALNRFLQEKDGSKMAFLDGPPPTRLCEPMVEYIRQNGGEVHLNAPVREMMLHREFRESVVDGFRLPNGTIVQGDLYVSAMPVDLVKKVIPKRMKERWSYFDQLDELEGVPVINIHLWFDRKL-TTVDHLLFSRSPLLSVYADMSTTCKGYQDDEKSMLELVFAPAKDWIGKSDEDIVAATMEELYRLFPTELSADGSKAKLVKSAVVKTPRSVYTPLPGKEAFRPDQRTPVGNFYLAGDYTKQIYLGSMEGATLSGKLCALKIAQDEQEWDGRSQ 568
            R+ +S+T+RL+       P   F VDYP         RP LE T + F  A  LS   +  PRP   KP  VV+AGAGLAGLSTAKYL DAG KP++LEARDVLGGKV+AWQD+DGDW ETGLHIFFGAYPN+  LF EL I +RLQWK HSMIFAMP K        FSRFDFP  LPAP NGILAIL N+EMLTWPEK+KF IGLLPA++ GQ YVE QD LSVK WM++QGVPDRV DEVFIAM+KAL FI+PD+LSM  +L ALNRFLQEK GSKMAFLDG PP RLC P+V++I+  GGEVHLN+ ++++ L+    +  V  F L NG +++GD YV A PVD++K ++P   KE   YF +L++L GVPVIN+H+WFDRKL  T DHLLFSRSPLLSVYADMS TCK Y +  +SMLELVFAPA++W+ +SDEDI+AATM EL +LFP E+ AD +KAK+VK  VVKTPRSVY  +P  E  RP QR+P+  FYLAGDYTKQ YL SMEGA LSGKLCA  I QD +    RSQ
Sbjct:   52 RAAKSTTTRLLRKKHGSLPLRVFCVDYP---------RPELENTVN-FLEAAFLSSTFRDSPRP--AKPLKVVVAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWQDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPG-----EFSRFDFPEALPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAMLGGQSYVEAQDGLSVKDWMRKQGVPDRVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGEVHLNSRIQKIDLN---DDGTVKSFLLNNGKVIEGDAYVFATPVDILKLLVPNNWKE-IPYFQRLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWVSRSDEDIIAATMSELAKLFPDEICADQTKAKIVKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLAARSQ 571          
The following BLAST results are available for this feature:
BLAST of EWM23892.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105173|gb|EWM23892.1|0.000e+0100.00phytoene desaturase [Nannochloropsis gaditana][more]
gi|299472937|emb|CBN77338.1|0.000e+066.30Phytoene desaturase, chloroplast precursor [Ectoca... [more]
gi|159465297|ref|XP_001690859.1|0.000e+070.28phytoene desaturase [Chlamydomonas reinhardtii] >g... [more]
gi|302833183|ref|XP_002948155.1|0.000e+069.06hypothetical protein VOLCADRAFT_88495 [Volvox cart... [more]
gi|1004147993|gb|KXZ55966.1|0.000e+067.91hypothetical protein GPECTOR_2g1518 [Gonium pector... [more]
gi|558761522|gb|AHA90853.1|0.000e+067.00phytoene desaturase [Ulva pertusa][more]
gi|54654427|gb|AAV37090.1|0.000e+065.55phytoene desaturase [Haematococcus lacustris][more]
gi|860211653|gb|AKO71907.1|0.000e+065.55norflurazon resistant phytoene desaturase [Cloning... [more]
gi|860206513|gb|AKO71906.1|0.000e+065.55phytoene desaturase [Haematococcus lacustris][more]
gi|1012104788|ref|XP_015958360.1|0.000e+062.85phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6803rna6803Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications