rna680, rna680 (mRNA) Nannochloropsis gaditana

Overview
Namerna680
Unique Namerna680
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1980
Alignment locationCM002456.1:151982..153111 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100276g10.9383.mrna
Orig protein idgnl|cribi|Naga_100276g10.9383
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:151982..153111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100276g10gene653Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna680rna680-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29982.1cds680Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna680 ID=rna680|Name=rna680|organism=Nannochloropsis gaditana|type=mRNA|length=1980bp
CCTCCCTCCCTCCTTCCCGCCACCTCCCTGCCTCCCTCCACAGCGGCCGC
CCTGCTTGTGGACGCGTGCACCCATCTCCAGCACCTGGCAGGCTTCCTTC
TCCAACGTGCGGTAGAGGTGCCCGATGACCCCTTCCTCTCCCCCTACTTG
ACAGAAACCATCCTCAGCTTTGTGGCCAGATTTGCCCGGACCTACCTCCT
GCCCGACCCCTCTCTCTACCGCAACGGCATCCTCGCTCCCACCTTAGTCC
AGGCTTTTGGGGGGGAGGCAGGGGAAGGCCAAGTGGAGCAAAGTCTCAGG
ATAGCCTGGGGGTTCCTGACGCGCTGGCCGTCGCAAAGGGAGGTGGCCAA
GGCTGCCATCGCCGTGGTGCGGGCGGTGGTGCTCACGGGGGGGGAACCGT
TGGGGCGCGCCGCCGTCCGCTCTGAGGCCTGGAAGATGATGTTACGGGAC
ATGGAGGCGGAGAAACACTTTTTGAGGCAGCACGGGGAGCAATTGGTGGG
CAATGGACAGGAGGGTCATGGCCATGCCCCCTCGCCATCGCCGCAAATTC
CGCCGGAACTTGGCTATCTCCGGCTGGCTTCGGATTTACGGGGCGAGCTC
TTGGAAGTCGTGGTGGGAGGAATTTTGGCGCGGGAAAACGACGCGGAGGC
CAGCCAGGGCATCGCACAGGTGGCAGGACCTGTGGAGACGCGGTTGCACT
TCCTTTACATGGGGTTGAAAGGCTCGAACGGGAAGAGTGGGGTAGGCCGG
AGCGGACTGGTGCGAGAGGTGGGGGTCGTGGCAGGATTGTACGCGGGCAT
GGCGCGCGCCGTGGACAACACAGGGCAAGCCTATTTGCCGCGTTTGATCA
CTCACGCCCTGGAGCCATTGCTGGATGTGGCCACGCTTTGCAGTGCGTAC
CCGGATGCCTTGCACGCCGTGCTGTTATTTTTGCGGGACTACGCCGAAGT
GCAGATTTCCAGCCTGGGGGCTCCGGCCACCATGAGCTTGTTGACGGCGA
CGGGACAGGCGTTGAAAGCGTATGCCAGCCACAACGTGGGCCGGACTCGG
AAAGACGCCAACTCGAAGGAAGAAGCGGTGGGTGACATCTTGTGCGTGCT
GGAACTGCTCTCCCATGTGGCAAGCAAAGATTTTGTGGATTTCTCGGCCG
AACAGGAAGGAAAATTGGCTGCAGACACGGTCGCGGACGTGGTCTTCTTT
GGGTTGGAACGCCTGATCCCTTTGATGTCCGAAGAGCTCTTGGAGTATCC
CCCCCTGGGAAAGCAGTATTTCACGCTGGTCAACTCCATGGTATCCACCT
ACACGGAGCGCGTGGCCTTCTTGCCCCATCCCCTCTTCATGCAGCTCCTG
CAAAGCGTCATGTTTGGGGTGCAGCGCCCCGACAGTGAGATTGCCCGCGA
TTCCCTCCGGGCCTTGGCAGGTCTGGCTTCCTTCCACGCCCAGACTGTGG
GCTCTCGCGTCAGGTCGGCCGGCCATGCGAACGGCGGAGGGAGGGGTCTC
GAGGCGCACGTGACGGCCCATCCTGCCCTTTTTTCGGAGTGCACCCGCAA
GCTCTTGCACCTGGTCGTGTACGAAGGGAGCGTGTGGGACCGTCTTGACG
CCGCTTCCAACGCCCTTTTGGCCTTGATTTTGTGCGATCGGGAGGCTTTC
CTCTGTCTGCTCGCCGGAATTTTGGAGGAGCAGCCTCCCAGTGTGAAGGA
GCGGCTGGGTCAAGAATTTCAAAAACTGATGTCGGCCATCCCGCCCCGCA
TGGAGGGAGGGGACGGAAGGGAGGGAGGGAGAAGACGGGGCCCGGCCTGG
GACCGGCAGACTAAGCTGGCATTCCGCCACCATCTGAGAGCGTTCGCCAC
CCAAGTCCGACCATTCATGCAAATGCGGTGAACAAAAAGGCGTCCCAGCC
GGAACGCGGCAGCAAAACTCCAACAGGGCGTGCAACAAGCCCTACGTTGA
AAAGTACCAAAACCCGGATGAACAACACAA
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protein sequence of rna680

>rna680-protein ID=rna680-protein|Name=rna680|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MFQRTSLKRAFSGGRSPTNVAFLCLLTSTLHHARAFGPLPPSFWHPSSID
PAATEIKPQSHPPPFRTSTESRPEASVPLPPPRTVKDILALDFDGVLCNS
VEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVE
TGYENVLLARLCMEKYLQGQGSTPDIHITDLAGKWQTHMRSALLHRYGVT
AQELVDVRGGWEGGKEGGGREGGREGRRDIVFMPAHPCGLYHLINGFKTL
LSDSCMARCGMSGWGRTRRAG
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mRNA from alignment at CM002456.1:151982..153111-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna680 ID=rna680|Name=rna680|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp|location=Sequence derived from alignment at CM002456.1:151982..153111- (Nannochloropsis gaditana)
ACTAACAGCTTATGTTTCAAAGAACATCCCTTAAAAGAGCGTTTTCGGGA
GGCCGCAGCCCTACTAACGTAGCGTTTCTTTGCCTGCTGACATCGACGCT
ACACCATGCGCGTGCGTTTGGCCCGCTCCCTCCCTCCTTCTGGCATCCTT
CGTCCATCGATCCAGCAGCCACAGAAATCAAACCTCAGAGCCATCCACCT
CCCTTCCGTACGTCGACGGAAAGCAGGCCAGAAGCATCGGTTCCACTGCC
CCCTCCTCGCACAGTGAAGGACATTTTAGCCCTCGATTTCGACGGGGTCC
TGTGCAACAGTGTCGAGGAGAGTAGTCAAGCCGCCTTCAGGAGCGTCAAG
AAAATGTGGCCACAATTGGCTACGTATTGTGCGCCTGTGGGGGGCGCTTC
CGCGAACGAATGCCCGGGGTGGCTGAGTGACAGGTGTGTGGATTGGGACG
TTAACCTTCACCCTAGGAAGGCCTTGGAGAGCAACACGCACGGGTTTAAA
GGGTTAAGTTCTTTCCCAAAATAGAGATTGAGCGCCAATCTCCAGGTTTC
AGACGGTCCAGCATGGCTCTCACCGCGCCCCCCTCGCTTTGTCATCCCTC
TCTGCTCCCCCCCCCCACATACACCCTGTCCGCACGCCCTACAGCTTGCG
ACACCTCCGCCCGCTGGTCGAGACGGGCTACGAGAATGTCCTTCTGGCAC
GTTTGTGCATGGAGAAGGTAGTGCCTGCCATCCAAAGGGAATTCTTGCCC
AGCAGGCGTCCATACCTACCCCCTTCCTCCCTCCCTTTCTCCCTCCCGCC
TTTGTGCAGTACCTGCAGGGGCAGGGGTCCACGCCCGACATTCACATCAC
AGATCTTGCCGGGAAATGGCAAACACACATGCGTTCCGCCTTGCTGCACC
GTTACGGGGTGACGGCGCAGGAGTTAGTTGACGTGCGTGGGGGATGGGAG
GGAGGGAAGGAGGGGGGAGGGAGGGAGGGAGGAAGGGAGGGAAGAAGGGA
TATAGTTTTTATGCCGGCACATCCATGTGGTCTTTATCACCTTATCAATG
GCTTTAAAACCCTTCTTTCCGACAGCTGTATGGCTCGGTGCGGGATGAGT
GGCTGGGGTCGGACGCGGAGGGCTGGGTGA
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Coding sequence (CDS) from alignment at CM002456.1:151982..153111-

>rna680 ID=rna680|Name=rna680|organism=Nannochloropsis gaditana|type=CDS|length=2448bp|location=Sequence derived from alignment at CM002456.1:151982..153111- (Nannochloropsis gaditana)
TACCTGCAGGGGCAGGGGTCCACGCCCGACATTCACATCACAGATCTTGC
CGGGAAATGGCAAACACACATGCGTTCCGCCTTGCTGCACCGTTACGGGG
TGACGGCGCAGGAGTTAGTTGACGTGCGTGGGGGATGGGAGGGAGGGAAG
GAGGGGGGAGGGAGGGAGGGAGGAAGGGAGGGAAGAAGGGATATAGTTTT
TATGCCGGCACATCCATGTGGTCTTTATCACCTTATCAATGGCTTTAAAA
CCCTTCTTTCCGACAGCTGTATGGCTCGGTGCGGGATGAGTGGCTGGGGT
CGGACGCGGAGGGCTGGGTGACTTGCGACACCTCCGCCCGCTGGTCGAGA
CGGGCTACGAGAATGTCCTTCTGGCACGTTTGTGCATGGAGAAGATGTTT
CAAAGAACATCCCTTAAAAGAGCGTTTTCGGGAGGCCGCAGCCCTACTAA
CGTAGCGTTTCTTTGCCTGCTGACATCGACGCTACACCATGCGCGTGCGT
TTGGCCCGCTCCCTCCCTCCTTCTGGCATCCTTCGTCCATCGATCCAGCA
GCCACAGAAATCAAACCTCAGAGCCATCCACCTCCCTTCCGTACGTCGAC
GGAAAGCAGGCCAGAAGCATCGGTTCCACTGCCCCCTCCTCGCACAGTGA
AGGACATTTTAGCCCTCGATTTCGACGGGGTCCTGTGCAACAGTGTCGAG
GAGAGTAGTCAAGCCGCCTTCAGGAGCGTCAAGAAAATGTGGCCACAATT
GGCTACGTATTGTGCGCCTGTGGGGGGCGCTTCCGCGAACGAATGCCCGG
GGTGGCTGAGTGACAGTACCTGCAGGGGCAGGGGTCCACGCCCGACATTC
ACATCACAGATCTTGCCGGGAAATGGCAAACACACATGCGTTCCGCCTTG
CTGCACCGTTACGGGGTGACGGCGCAGGAGTTAGTTGACGTGCGTGGGGG
ATGGGAGGGAGGGAAGGAGGGGGGAGGGAGGGAGGGAGGAAGGGAGGGAA
GAAGGGATATAGTTTTTATGCCGGCACATCCATGTGGTCTTTATCACCTT
ATCAATGGCTTTAAAACCCTTCTTTCCGACAGCTGTATGGCTCGGTGCGG
GATGAGTGGCTGGGGTCGGACGCGGAGGGCTGGGTGACTTGCGACACCTC
CGCCCGCTGGTCGAGACGGGCTACGAGAATGTCCTTCTGGCACGTTTGTG
CATGGAGAAGATGTTTCAAAGAACATCCCTTAAAAGAGCGTTTTCGGGAG
GCCGCAGCCCTACTAACGTAGCGTTTCTTTGCCTGCTGACATCGACGCTA
CACCATGCGCGTGCGTTTGGCCCGCTCCCTCCCTCCTTCTGGCATCCTTC
GTCCATCGATCCAGCAGCCACAGAAATCAAACCTCAGAGCCATCCACCTC
CCTTCCGTACGTCGACGGAAAGCAGGCCAGAAGCATCGGTTCCACTGCCC
CCTCCTCGCACAGTGAAGGACATTTTAGCCCTCGATTTCGACGGGGTCCT
GTGCAACAGTGTCGAGGAGAGTAGTCAAGCCGCCTTCAGGAGCGTCAAGA
AAATGTGGCCACAATTGGCTACGTATTGTGCGCCTGTGGGGGGCGCTTCC
GCGAACGAATGCCCGGGGTGGCTGAGTGACAGTACCTGCAGGGGCAGGGG
TCCACGCCCGACATTCACATCACAGATCTTGCCGGGAAATGGCAAACACA
CATGCGTTCCGCCTTGCTGCACCGTTACGGGGTGACGGCGCAGGAGTTAG
TTGACGTGCGTGGGGGATGGGAGGGAGGGAAGGAGGGGGGAGGGAGGGAG
GGAGGAAGGGAGGGAAGAAGGGATATAGTTTTTATGCCGGCACATCCATG
TGGTCTTTATCACCTTATCAATGGCTTTAAAACCCTTCTTTCCGACAGCT
GTATGGCTCGGTGCGGGATGAGTGGCTGGGGTCGGACGCGGAGGGCTGGG
TGACTTGCGACACCTCCGCCCGCTGGTCGAGACGGGCTACGAGAATGTCC
TTCTGGCACGTTTGTGCATGGAGAAGATGTTTCAAAGAACATCCCTTAAA
AGAGCGTTTTCGGGAGGCCGCAGCCCTACTAACGTAGCGTTTCTTTGCCT
GCTGACATCGACGCTACACCATGCGCGTGCGTTTGGCCCGCTCCCTCCCT
CCTTCTGGCATCCTTCGTCCATCGATCCAGCAGCCACAGAAATCAAACCT
CAGAGCCATCCACCTCCCTTCCGTACGTCGACGGAAAGCAGGCCAGAAGC
ATCGGTTCCACTGCCCCCTCCTCGCACAGTGAAGGACATTTTAGCCCTCG
ATTTCGACGGGGTCCTGTGCAACAGTGTCGAGGAGAGTAGTCAAGCCGCC
TTCAGGAGCGTCAAGAAAATGTGGCCACAATTGGCTACGTATTGTGCGCC
TGTGGGGGGCGCTTCCGCGAACGAATGCCCGGGGTGGCTGAGTGACAG
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Synonyms
Publications