EWM29982.1, cds680 (CDS) Nannochloropsis gaditana

Overview
NameEWM29982.1
Unique Namecds680
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:152679..153100 -
Alignment locationCM002456.1:152395..152467 -
Alignment locationCM002456.1:151982..152302 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29982.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100276g10.9383.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:152679..153100 -
CM002456.1supercontigCM002456.1:152395..152467 -
CM002456.1supercontigCM002456.1:151982..152302 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29982.1 vs. NCBI_GenBank
Match: gi|585112590|gb|EWM29982.1| (hypothetical protein Naga_100276g10 [Nannochloropsis gaditana])

HSP 1 Score: 559.681 bits (1441), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query:    1 MFQRTSLKRAFSGGRSPTNVAFLCLLTSTLHHARAFGPLPPSFWHPSSIDPAATEIKPQSHPPPFRTSTESRPEASVPLPPPRTVKDILALDFDGVLCNSVEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVETGYENVLLARLCMEKYLQGQGSTPDIHITDLAGKWQTHMRSALLHRYGVTAQELVDVRGGWEGGKEGGGREGGREGRRDIVFMPAHPCGLYHLINGFKTLLSDSCMARCGMSGWGRTRRAG 271
            MFQRTSLKRAFSGGRSPTNVAFLCLLTSTLHHARAFGPLPPSFWHPSSIDPAATEIKPQSHPPPFRTSTESRPEASVPLPPPRTVKDILALDFDGVLCNSVEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVETGYENVLLARLCMEKYLQGQGSTPDIHITDLAGKWQTHMRSALLHRYGVTAQELVDVRGGWEGGKEGGGREGGREGRRDIVFMPAHPCGLYHLINGFKTLLSDSCMARCGMSGWGRTRRAG
Sbjct:    1 MFQRTSLKRAFSGGRSPTNVAFLCLLTSTLHHARAFGPLPPSFWHPSSIDPAATEIKPQSHPPPFRTSTESRPEASVPLPPPRTVKDILALDFDGVLCNSVEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVETGYENVLLARLCMEKYLQGQGSTPDIHITDLAGKWQTHMRSALLHRYGVTAQELVDVRGGWEGGKEGGGREGGREGRRDIVFMPAHPCGLYHLINGFKTLLSDSCMARCGMSGWGRTRRAG 271          
BLAST of EWM29982.1 vs. NCBI_GenBank
Match: gi|168014529|ref|XP_001759804.1| (predicted protein [Physcomitrella patens] >gi|162688934|gb|EDQ75308.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-14
Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 0
Query:   88 ILALDFDGVLCNSVEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVETGYENVLLARLCMEK---YLQGQGSTPDIHITDLAGKWQTHMRSALLHRYGVTAQELVDVRG 209
            + ALDFDGVLC+S  ESS +A ++ +  +P+L       G  +A E   W+ D++R +RP+VETGYENVLL RL +E    +L+       + + D+   W+  ++  L+  +    +ELVD+ G
Sbjct:    4 LYALDFDGVLCDSCGESSISAVKAAQIRYPELFA-----GMDAATET--WILDTMRVVRPVVETGYENVLLVRLLLEIKAPHLRKTLVAGKLSVDDILADWEHGIKPVLMKEWSENKEELVDLFG 121          
BLAST of EWM29982.1 vs. NCBI_GenBank
Match: gi|545708295|ref|XP_005706460.1| (hypothetical protein Gasu_27250 [Galdieria sulphuraria] >gi|452822925|gb|EME29940.1| hypothetical protein Gasu_27250 [Galdieria sulphuraria])

HSP 1 Score: 78.1814 bits (191), Expect = 2.365e-13
Identity = 44/134 (32.84%), Postives = 69/134 (51.49%), Query Frame = 0
Query:   79 LPPPRTVKDILALDFDGVLCNSVEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVETGYENVLLARLCMEKY---LQGQGSTPDIHITDLAGKWQTHMRSALLHRYGVTAQELVDVRG 209
            +PP        ALDFDGVLC+S  E   +A  +++  WPQ+     P    +  E P WL   L+ LRPLVE GYE +LL  L +++    ++ Q  +  + + ++   W + ++  L   Y    +ELVD+ G
Sbjct:    1 MPPLNKTGVAYALDFDGVLCDSCLELICSAMLAIRSKWPQVLQDLVP----NPLEPPDWLVSKLQKLRPLVEVGYEMILLGLLVVDEQHASIRSQQKSRPLSVGEIMENWHSQIKDQLWREYKTCDKELVDLFG 130          
BLAST of EWM29982.1 vs. NCBI_GenBank
Match: gi|702341284|ref|XP_010056396.1| (PREDICTED: uncharacterized protein LOC104444425 [Eucalyptus grandis] >gi|629107961|gb|KCW73107.1| hypothetical protein EUGRSUZ_E01551 [Eucalyptus grandis])

HSP 1 Score: 77.0258 bits (188), Expect = 6.289e-13
Identity = 47/126 (37.30%), Postives = 69/126 (54.76%), Query Frame = 0
Query:   87 DILALDFDGVLCNSVEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVETGYENVLLARLCME---KYLQGQGSTPDIHITDLAGKWQTHMRSALLHRYGVTAQELVDVRG 209
            D+ ALDFDGVLC+S  ESS +A ++ K  WP L       G  SA E   W+ D +  +RP+VETGYENVLL RL +E     ++       + I  +   W + ++  ++  +G   + LVD+ G
Sbjct:    3 DLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFD-----GVDSATE--DWIVDQMHIVRPIVETGYENVLLVRLLLEMRMSSIRKSSVAEGLTIDGILESW-SKIKPVIMEEWGENRETLVDLFG 120          
BLAST of EWM29982.1 vs. NCBI_GenBank
Match: gi|873224511|emb|CEM26046.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 78.5666 bits (192), Expect = 6.524e-13
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = 0
Query:   79 LPPPRTVK---DILALDFDGVLCNSVEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVETGYENVLLARLCMEKYL---QGQGSTPD-------IHITDLAGKWQTHMRSALLHRYGVTAQELV 205
            LP PR +    +I ALDFDGV+C S +ES  +A+ + K +WP+   +         +  P WL + +RH RP++ETGYE +L+ R  +E+ L   +  G + D         +  L  +W    R  L+ RYG + +EL+
Sbjct:   75 LPGPRFMAVPPEIFALDFDGVICTSHKESMLSAYAACKALWPERFRW---------DTMPFWLMERVRHARPVIETGYETLLVMRWLVEEMLAVEEQYGYSIDDKPMYFPWRVRMLESEWGPAFRDGLMDRYGASKEELM 205          
BLAST of EWM29982.1 vs. NCBI_GenBank
Match: gi|1009162937|ref|XP_015899702.1| (PREDICTED: uncharacterized protein LOC107432983 [Ziziphus jujuba])

HSP 1 Score: 76.6406 bits (187), Expect = 9.269e-13
Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = 0
Query:   87 DILALDFDGVLCNSVEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVETGYENVLLARLCMEKY---LQGQGSTPDIHITDLAGKWQTHMRSALLHRYGVTAQELVDVRG 209
            D+ ALDFDGVLC+S  ESS +A ++ K  WP L        G  +     W+ D +  +RP+VETGYENVLL RL +E     ++    +  + +  +   W + ++  ++  +GV    L+D+ G
Sbjct:    3 DLYALDFDGVLCDSCGESSLSAVKAAKVRWPSL------FDGVDST-LEDWIVDQMHIVRPVVETGYENVLLVRLLLETRKPSIRKSSVSEGLTVEGILENW-SKLKPVIIEEWGVQRDALIDLFG 120          
BLAST of EWM29982.1 vs. NCBI_GenBank
Match: gi|1050606876|ref|XP_017626001.1| (PREDICTED: uncharacterized protein LOC108469594 [Gossypium arboreum])

HSP 1 Score: 76.2554 bits (186), Expect = 1.274e-12
Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = 0
Query:   87 DILALDFDGVLCNSVEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVETGYENVLLARLCMEKYL---QGQGSTPDIHITDLAGKWQTHMRSALLHRYGVTAQELVDVRG 209
            D+ ALDFDGVLC+S  ESS +A ++ K  WP L    A V          W+ D +  +RP+VETGYEN+LL RL +E  L   +       + + D+   W + ++  ++  +      L+D+ G
Sbjct:    3 DLYALDFDGVLCDSCGESSISAVKAAKVRWPDLFDGVASV-------LEDWIVDQMHIVRPVVETGYENLLLVRLLVESRLPSIRKSSVAEGLTVEDILENW-SKIKPVIMEEWDENRDALIDLFG 120          
BLAST of EWM29982.1 vs. NCBI_GenBank
Match: gi|308810493|ref|XP_003082555.1| (unnamed protein product [Ostreococcus tauri])

HSP 1 Score: 75.8702 bits (185), Expect = 1.646e-12
Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 0
Query:   82 PRTVKDILALDFDGVLCNSVEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVETGYENVLLARLCMEKYLQGQGSTPDIHITDLAGKWQTHMRSALLHRYGVTAQELVD----VRGGW 211
            PR    I ALDFDGV+C+SV ESS +A++   ++WP++  +  P     A      + D LR +RP+VETGYEN  LAR  +EK L G G      + D+  +W   +   L+ R+G+    +V+    +R  W
Sbjct:    9 PRADGVIFALDFDGVVCDSVGESSLSAWKHGVELWPEV--FDTP----EATTAKPRVLDELRAVRPVVETGYENTTLARALLEK-LDGYG------VEDILNEWD-QISGGLMQRWGLDRAMMVEAFGRIRDDW 128          
BLAST of EWM29982.1 vs. NCBI_GenBank
Match: gi|971517087|dbj|GAQ81108.1| (hypothetical protein KFL_000710130 [Klebsormidium nitens])

HSP 1 Score: 75.485 bits (184), Expect = 2.452e-12
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 0
Query:   86 KDILALDFDGVLCNSVEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVETGYENVLLARLCMEKYLQGQGSTP---DIHITDLAGKWQTHMRSALLHRYGVTAQELVDVRG 209
            +D+ ALDFDGVLC+S  ESS +A+++    WP+L    A VG     +    L+D +R +RP+VETGYEN+LL RL +E       ++    ++ I  L   W+  ++   +  +GV  + LV++ G
Sbjct:    3 QDLYALDFDGVLCDSCGESSLSAWKAAAIQWPEL---FADVGEGVKEKV---LAD-MRTVRPVVETGYENILLVRLLLEMTQPSSNASKVVSELSIAALLTGWEHEVKPVAMAEWGVEKEPLVELFG 122          
BLAST of EWM29982.1 vs. NCBI_GenBank
Match: gi|1028948627|ref|XP_016717649.1| (PREDICTED: uncharacterized protein LOC107930494 isoform X3 [Gossypium hirsutum])

HSP 1 Score: 75.0998 bits (183), Expect = 3.172e-12
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = 0
Query:   87 DILALDFDGVLCNSVEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVETGYENVLLARLCMEKYL---QGQGSTPDIHITDLAGKWQTHMRSALLHRYGVTAQELVDVRG 209
            D+ ALDFDGVLC+S  ESS +A ++ K  WP L      V          W+ D +  +RP+VETGYEN+LL RL +E  L   +       + + D+   W + ++  ++  +      L+D+ G
Sbjct:    3 DLYALDFDGVLCDSCGESSISAVKAAKVRWPDLFDGVDSV-------LEDWIVDQMHRVRPVVETGYENLLLVRLLVESRLPSIRKSSVAEGLTVEDILENW-SKIKPVIMEEWDENRDALIDLFG 120          
The following BLAST results are available for this feature:
BLAST of EWM29982.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112590|gb|EWM29982.1|0.000e+0100.00hypothetical protein Naga_100276g10 [Nannochlorops... [more]
gi|168014529|ref|XP_001759804.1|1.304e-1436.80predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|545708295|ref|XP_005706460.1|2.365e-1332.84hypothetical protein Gasu_27250 [Galdieria sulphur... [more]
gi|702341284|ref|XP_010056396.1|6.289e-1337.30PREDICTED: uncharacterized protein LOC104444425 [E... [more]
gi|873224511|emb|CEM26046.1|6.524e-1333.57unnamed protein product [Vitrella brassicaformis C... [more]
gi|1009162937|ref|XP_015899702.1|9.269e-1334.13PREDICTED: uncharacterized protein LOC107432983 [Z... [more]
gi|1050606876|ref|XP_017626001.1|1.274e-1234.13PREDICTED: uncharacterized protein LOC108469594 [G... [more]
gi|308810493|ref|XP_003082555.1|1.646e-1236.57unnamed protein product [Ostreococcus tauri][more]
gi|971517087|dbj|GAQ81108.1|2.452e-1236.22hypothetical protein KFL_000710130 [Klebsormidium ... [more]
gi|1028948627|ref|XP_016717649.1|3.172e-1233.33PREDICTED: uncharacterized protein LOC107930494 is... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna680rna680Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications