rna6798, rna6798 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6798
Unique Name	rna6798
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1860
Alignment location	CM002469.1:532760..533323 -

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function DUF1713, mitochondria
Orig transcript id	gnl\|cribi\|Naga_100161g4.9652.mrna
Orig protein id	gnl\|cribi\|Naga_100161g4.9652
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:532760..533323 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100161g4	gene6572	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23883.1	cds6782	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6798	rna6798-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:532760..533323-
coding sequence from alignment at CM002469.1:532760..533323-

mRNA sequence

>rna6798 ID=rna6798|Name=rna6798|organism=Nannochloropsis gaditana|type=mRNA|length=1860bp
ATGAGAGCCGCCATGCCCTCGATCTTGTCATTGCGCTTCGTCTATTCTTG
CATGGTCATCACAACAGTGAAAGCGTTGCCTATGCCTCGCACGGCATTTC
ATGTCCCCGCTGTGTCCTCGTCCCTGTCCTCGATGGCCGAGCAAGGACTG
TCTTTTGGGCAATCGCACCCCCCCGTCTTCCCGCGGGCAGGAAGCAGGCC
GTCCTTGACGAAAGCCGCACAGCATCATGAGAACTTTCAGGCGCAGAGAT
TTGCTTGGAATGGATTGTTCAGAAGACCCGGCCCTGTACGCAGTTCTCCC
ACGCGTCCCATGCTCGCGTCTCTCACACCCGAGCAAGAAGTGAAGAACTA
CCAGATTCGCCGGCAGGTGGAGGATCTGGACGAGCTGATTCGCACCAAAA
CAGATGCCAAGCGTGCGATCGAGAAGGAGGTGGAGGGCTTGCTGGCCCAG
AAGCGAAGCCTGCAGATGGAAGTGAACACGATGGCCCCCTCCCTGGAGAT
CGCGAGCGAGTCCCCCCTCCGGTCCCTGGTCAAAGCATGCTCCTGGCGCC
TGGTCGCCGCCCTCATCACCCTCAGCACCTCCCTCTTCTTCTCCCGCGAC
GCGAAGATGGCTGCCTCCATCGTCTCGTCGGACTTCCTCTCCAAGGCGGG
GACCATGTATCTGGGCGAGCGGCTCTGGAACAAGGTGTCGTGGGGGAAGG
AGGCCAAGGCCGGGGACGCGGCTTCCAGATCCATCATGAAAGCCTTTGCC
TGGCGGGCCTTCGCCATGGTCAACACCCTCATCATCTCCATCTTCTTCGC
CAAGAGCGTCAAAGTCGCCGGACAAATCGCTTCCACAGATACTATCATCA
AGACATCACTTTATGTGGTGCATGAACGTTGCCCTTTGAAAGGCGCCACG
GTGGAAGGGGGAAATGAGCAATGTATACATACGGAGAGATGTTTCGCGGG
CATGTGGATGTCGCAAATATTGGCTGAGAAGGGAGGTCGAGCAATAATGC
TGAAGAAAGGGGCGCAGGGGAGGAGAACAGAGGGCAAGAGAATTACCAGG
AGCGGCCTTCTGGCTTACACGCGACGAATGCGACGCGGCGATGGTGCGAA
GGAAGGTCATGCAGAGCCTGCTTATGAACGACAAAGAACGAAACAAGCCA
AGGAACGATTGATGACTGCAGACGGACCTTTACAAGGCATGAGAATTAGC
CACAACATGCAAGTGCCAAAGCCTGCTCAAGTCATTAATCGCGGGGATGG
TGGCGTTGTTCATCTCCGCTCTGCCTTTGGAGACGTCTTTGATATCGAGG
TAAATGAAAAAGTCAGCCTTTTACAGATCCGGCACGAGCTCGCTGCACTT
CTTCCCCACGTGGGTCCAATATATTTCCATCAAGATGACCAGTTCTTAAC
GGATGAGTCTCACATCGATCCTGAGAGAGCTGTGGACTTCACTTATCCCC
TTTCGGGGGGAGGTACTACCTTGGAGGTTGTTAAAACCATACCGGAGATG
CTTCGTCTTCATATCTTGTGCTGGAAGGCGGGATGTCAGCAGGTGGGAAA
TCTTCAAGACTCTGTGTGGTGTGAGAACACATTTTGTTGCTTGTTCCACA
GGTGTGGCACGCAGAACATTCTGAAAGAGCAACAGCTAGCCTGTGTGAAA
GTGAGCTTAACGCCCCCAGGTTGTGGATGCGACACTACCATGCCAGCTTG
TCTGCAGGCGAAATGCCTTTGTTGGAACTGTGGTCTTAAAAGCATGCCAG
ACTTGCAAAAAGACGACTGGGTCACGGACTCCGTGCTTTGTGTGTACTCG
AACTGCGGGCCCAAGGACTGCGCCTCCCCCCAGATCTTGTGTTTCAAATG
CAACTGTTGA

protein sequence of rna6798

>rna6798-protein ID=rna6798-protein|Name=rna6798|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MDVCPSTGPRLSFHYLVLLSSTRLLGCKAMATTAALRTWWSRLATPTSSM
SMSLTSQSSIRALYSSPRMSPTSVASKSSIVGGSWQASSLFSTLPAYTKT
IRSLPPSPGQPSSWFGHILSGLLKRCSSTLKKRRSKMNKHKLKKRRKLMR
NKNKKNL

mRNA from alignment at CM002469.1:532760..533323-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6798 ID=rna6798|Name=rna6798|organism=Nannochloropsis gaditana|type=mRNA|length=564bp|location=Sequence derived from alignment at CM002469.1:532760..533323- (Nannochloropsis gaditana)
CGTATTGGTGCGACAATATGATATGTTGATATGGACGTTTGTCCTTCGAC
AGGTCCACGCCTTTCATTCCATTATCTTGTCCTCCTTTCCTCCACCAGGC
TACTAGGTTGTAAAGCAATGGCAACGACCGCCGCCCTCAGGACGTGGTGG
AGTAGATTAGCCACCCCAACATCCTCTATGTCCATGTCTTTGACATCGCA
AAGTAGCATACGTGCCCTGTACTCGTCGCCAAGAATGTCTCCCACCTCCG
TCGCAAGTAAGAGCTCAATCGTCGGCGGGTCATGGCAAGCCTCTTCTTTA
TTTTCCACACTTCCTGCATACACCAAGACAATTCGCAGTCTACCCCCTTC
GCCTGGACAGCCCTCCTCGTGGTTTGGCCACATTCTTAGTGGGTTGCTGA
AGAGATGCTCGAGCACTTTAAAGAAGCGGCGGTCGAAAATGAATAAGCAC
AAACTAAAGAAGAGGAGGAAATTGATGCGCAATAAGAACAAGAAAAATTT
GTAACAAACGCCGAGAGTTCTTAAATGATGAAGGTACTTTGCAATAAAGA
AATCCATTTAAAGA

Coding sequence (CDS) from alignment at CM002469.1:532760..533323-

>rna6798 ID=rna6798|Name=rna6798|organism=Nannochloropsis gaditana|type=CDS|length=474bp|location=Sequence derived from alignment at CM002469.1:532760..533323- (Nannochloropsis gaditana)
ATGGACGTTTGTCCTTCGACAGGTCCACGCCTTTCATTCCATTATCTTGT
CCTCCTTTCCTCCACCAGGCTACTAGGTTGTAAAGCAATGGCAACGACCG
CCGCCCTCAGGACGTGGTGGAGTAGATTAGCCACCCCAACATCCTCTATG
TCCATGTCTTTGACATCGCAAAGTAGCATACGTGCCCTGTACTCGTCGCC
AAGAATGTCTCCCACCTCCGTCGCAAGTAAGAGCTCAATCGTCGGCGGGT
CATGGCAAGCCTCTTCTTTATTTTCCACACTTCCTGCATACACCAAGACA
ATTCGCAGTCTACCCCCTTCGCCTGGACAGCCCTCCTCGTGGTTTGGCCA
CATTCTTAGTGGGTTGCTGAAGAGATGCTCGAGCACTTTAAAGAAGCGGC
GGTCGAAAATGAATAAGCACAAACTAAAGAAGAGGAGGAAATTGATGCGC
AATAAGAACAAGAAAAATTTGTAA

Synonyms

Publications