EWM23883.1, cds6782 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23883.1
Unique Name	cds6782
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002469.1:532820..533293 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23883.1
Product	protein of unknown function DUF1713, mitochondria
Orig transcript id	gnl\|cribi\|Naga_100161g4.9652.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:532820..533293 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR013177	DUF1713_mit

Homology

[Close]

BLAST of EWM23883.1 vs. NCBI_GenBank
Match: gi|585105164|gb|EWM23883.1| (protein of unknown function DUF1713, mitochondria [Nannochloropsis gaditana])

HSP 1 Score: 307.76 bits (787), Expect = 7.900e-106
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0

Query:    1 MDVCPSTGPRLSFHYLVLLSSTRLLGCKAMATTAALRTWWSRLATPTSSMSMSLTSQSSIRALYSSPRMSPTSVASKSSIVGGSWQASSLFSTLPAYTKTIRSLPPSPGQPSSWFGHILSGLLKRCSSTLKKRRSKMNKHKLKKRRKLMRNKNKKNL 157
            MDVCPSTGPRLSFHYLVLLSSTRLLGCKAMATTAALRTWWSRLATPTSSMSMSLTSQSSIRALYSSPRMSPTSVASKSSIVGGSWQASSLFSTLPAYTKTIRSLPPSPGQPSSWFGHILSGLLKRCSSTLKKRRSKMNKHKLKKRRKLMRNKNKKNL
Sbjct:    1 MDVCPSTGPRLSFHYLVLLSSTRLLGCKAMATTAALRTWWSRLATPTSSMSMSLTSQSSIRALYSSPRMSPTSVASKSSIVGGSWQASSLFSTLPAYTKTIRSLPPSPGQPSSWFGHILSGLLKRCSSTLKKRRSKMNKHKLKKRRKLMRNKNKKNL 157

The following BLAST results are available for this feature:

BLAST of EWM23883.1 vs. NCBI_GenBank

BLAST of EWM23883.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585105164\|gb\|EWM23883.1\|	7.900e-106	100.00	protein of unknown function DUF1713, mitochondria ...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna6798	rna6798	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications