rna6795, rna6795 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6795
Unique Name	rna6795
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1095
Alignment location	CM002469.1:519858..522009 -

Link to JBrowse

Properties


Property Name	Value
Product	tigr00730 family protein
Orig transcript id	gnl\|cribi\|Naga_100113g26.9965.mrna
Orig protein id	gnl\|cribi\|Naga_100113g26.9965
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:519858..522009 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100113g26	gene6569	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6795	rna6795-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23899.1	cds6779	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:519858..522009-
coding sequence from alignment at CM002469.1:519858..522009-

mRNA sequence

>rna6795 ID=rna6795|Name=rna6795|organism=Nannochloropsis gaditana|type=mRNA|length=1095bp
ATGTGCAAGTTGCAATGGATGCACCTGGCAATGCTTCGACAAGGCCAAGA
CACGCACTCACTAGCACAGGTACCCGTACAGGCGCCCTCTTCGACAAAAT
TGATGCCAGAGCCTGTCACGGCTCTATGTCTCCCTGCACTGCGTCAGCTT
ATGCCAGATCTTCCTGCTGATTTAGAGCAACTTTTGGGAGCTGTTGCACG
AGCCTCAAAACGCATAGCAGACACCCTACGGACAGGAGACGCTCACACGA
AAAGCGGCATTGAAAACACATTCGGAGACGAACAGCTGCACCTGGACGTG
GTCACAAACGAGATTGCTTTCGAGGAGCTCCGAGCGTGTGGGTTGGTGCA
CATTGCCAGCAGCGAGGAGACCCCGACAGAGGAAGACCTGGGGGCACCTA
AAGCTGCCCCCGGGGAAGGCTTCTCCGTGTCTTTTGATCCCTTGGACGGA
AGCAGCATCATCGACACGAATTTTTCAGTGGGTTCCATATTCGGCGTCTG
GCCGGGAAGGGGCCTCTTGGGACGCACGGGGAGGGAGCAGGTCTCGTCAA
TCCTGACCGTGTACGGGCCGCGGGTAACGCTGGTCATCGCTTTACCCCAA
GCTGCCGCCGGCCCACGTACTGTCCAGCTCATGCTGCAGCATGACAGCAC
ATGGGAGATGATCCACGAGAACTTGCGGGTGGCGCCGGCGGGGAAAATCT
TTGCGCCTGGGAACTTGCGGGCCACCGCGGACAATGCAGCCTACAAGCAG
CTTGTTGATTTCTGGATCGCAGAACGTTACACCTTGCGATATACGGGGGG
ATTGGTTCCCGACGTGTACCATGTCCTCATTAAAGGCAAAGGGGTTGTGA
CAAACGTTGTCTCGGCGGCTGCGAAGGCCAAGCTTCGCCTACTGTACGAG
GCGGCACCCATTGCCTTGGTTATGGAGTGTGCAGGCGCCGCTTCTTGCAC
AGCGCCCGGGCCCAATGGGGAGCACCCGGAGCCCATCTCGATATTGGACT
TACCCATTATGGGTCTAGAATTCAAGTGTGGAGTGGCGTATGGTGGGGTG
GAGGAGGTAGCGATCTTTACGAAACTGATGTATCCGGGATCATAA

protein sequence of rna6795

>rna6795-protein ID=rna6795-protein|Name=rna6795|organism=Nannochloropsis gaditana|type=polypeptide|length=247bp
MRVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNE
GARAGGGKIKTVIHGKWVIDKMEFEDVDELVIAQGNNLQERKRLLWETCD
CVIVLPGGTGTWDELMEVACHNSVGFGKIPITLVNVDGFYDGIIQQVARA
ARDKILYATPDDTMHVETTAQGALSWCAKRVQAQREAGGALGGDALVLQG
RTRTFIFQRRHSFLVGLVLGFAGAILTVGEAALLNRFWRKRQAGRHF

mRNA from alignment at CM002469.1:519858..522009-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6795 ID=rna6795|Name=rna6795|organism=Nannochloropsis gaditana|type=mRNA|length=2152bp|location=Sequence derived from alignment at CM002469.1:519858..522009- (Nannochloropsis gaditana)
CAGGCGCCCGTCCGCTGCCCATCGTATGGCATCAGGATGCTGTAGCGTAT
CGTACAAAACGAGCTTTTGCTCCAGACACGAGCACGGGGCACGGGCTGCT
GGCGGAAGGGACGGTTGGTCCATGCGGTACCTTGATGAGGACAAACCAGC
CCCCCCGATGGGGAAGACAGGCTACGAAACGGTATCACGGTAGGCCAGCT
AATGTCTGTGTAGATTGAGCGGGCATGAAAGGATCATGAGCTCACAAAGC
AGACCAAATGACGGCACAATCTACCAAGCTCAGCGACCTCCCCTCCTGGG
TACCTCCTCTCCTCCTTTTACCATGGCTAAATCATCACCAACGACTCACA
CATGACCGGAAGCACAAAATGGGGATCGTCACACGTTTTCCTAAGGATAT
GGCCACATTCTGGGCCCTTTGACATTTGATTCTGACTTGGTCGGGGTAAC
GTGTCTCACGCGATTCGTCTTCTCCCCCACCCTCATACTCATAGGGGTAT
ACGCCTGCATTCTTACCCCGCATTTTCTAACATCGTCTCCCGTTTTTCGA
AATGCGAGTCTGCGTCTTTGCATCCTCAAGCTCACTTACACCGGAGCCAT
ATCTCAAGGTAAAAGTTCATGATTTGTTAATTGGGGTTCATCAGGCTTTC
TCACCAATGGCCTACCACCTGCCTTCCTTACTTTAGGTGGCACGTGAGTT
GGGGGAGGAGATAGCCAAGGCGCAGTACCTCTGCATCAATGGCGGAGGCA
AAAACGGGTGTATGGGTGCCTTGAATGAGGGGGCGCGGGCCGGTGGAGGC
AAGGTATTTTTTTTGTGCGAGCGTAGTATTGTCGTTTGAGCAAGTGTGTG
ACTGCAAAGTCCAGTCGCTGACCGGGCGCAACAATTTAACTTAAATTTCT
TTTCACCGACCCAATTCAAGTGTCTTAAGTCGGTTGATCGTCTCCAATCC
CTCTTCCGCATGCCTTTCCCACAAAAGATCAAGACGGTCATCCACGGAAA
GTGGGTGATAGACAAGATGGAGTTCGAGGACGTGGACGAGCTCGTGATCG
CCCAGGGCAACAATCTGCAGGAACGGAAGCGTTTGTTGTGGGAGACCTGT
GACTGTGTGATAGTCTTGCCCGGCGGGACAGGGACGTGGGACGAATTAAT
GGAGGTAGGGAGGAAAGTAGGGGGATGGGTTGCGCGTGCTTGGAAAGAGT
AGAAGTGAGTTTTTTGCTCTGAGTCTCGAAAGGAAAGTGCTTACGATGGC
GCGTCTGCTCCTACACGTTGTGGGCACCAAAGATTCATCCTCACTGGCTG
GTACATGGCAGGCGGGACAAGGGTCCTCTCAGTCACCCTGACCACCTTCC
CCCTGTTGGGACCTCCTCGAACGCGAGCCTCCGCCCGCACGCTTTCGACG
CCGACAGCTCACTTTTCCGCCAACAACCCCTTCCTCTAGGTGGCCTGCCA
CAATTCTGTGGGTTTCGGGAAAATCCCCATCACCCTCGTCAATGTGGATG
GCTTTTACGACGGCATTATCCAGCAGGTGGCGCGGGCAGCCCGGGATAAA
ATCCTGTATGCCACCCCTGACGACACCATGCACGTGGAGACAACTGCTCA
AGGCGCTCTGTCCTGGTGCGCAAAGCGGGTGCAAGCCCAACGGGAGGCTG
GAGGTGCTCTAGGGGGCGACGCCCTGGTTTTGCAAGGACGAACCAGGACG
TTTATCTTCCAGCGGCGGCACTCCTTTTTGGTCGGTCTGGTGCTTGGCTT
TGCAGGCGCGATCTTGACGGTGGGAGAGGCAGCCTTACTCAATCGATTCT
GGAGGAAACGTCAGGCTGGAAGGCACTTCTAGATAGACTTTTAGAGAGCG
CGAACTCTCAATAGGTCTAGCGGGTGAAGAATGTGAAGGTGTCATTTATG
GGCTAGCAACTTTAAAGCATGTACACCTAGAAGGAACGACTTGCGCTCCA
ACGGGAGGGACTGCCCTCGTTTAGTCAGTCCCGTTTTAATTTAGGTCCCT
TTTTTCCTTTTTCGAACATTTTTCCTCAATTATCAGAGGTTCTGTGTGGT
ACGAAGACCGCCTGCAACCAAAAAATCGCATGAGACGACCGGCGTCATCT
TCCAGCACGCTAGAAACGTCGCGATGAGAGTTCAAAGAGCGCGAATACGA
AG

Coding sequence (CDS) from alignment at CM002469.1:519858..522009-

>rna6795 ID=rna6795|Name=rna6795|organism=Nannochloropsis gaditana|type=CDS|length=2976bp|location=Sequence derived from alignment at CM002469.1:519858..522009- (Nannochloropsis gaditana)
GTGGCCTGCCACAATTCTGTGGGTTTCGGGAAAATCCCCATCACCCTCGT
CAATGTGGATGGCTTTTACGACGGCATTATCCAGCAGGTGGCGCGGGCAG
CCCGGGATAAAATCCTGTATGCCACCCCTGACGACACCATGCACGTGGAG
ACAACTGCTCAAGGCGCTCTGTCCTGGTGCGCAAAGCGGGTGCAAGCCCA
ACGGGAGGCTGGAGGTGCTCTAGGGGGCGACGCCCTGGTTTTGCAAGGAC
GAACCAGGACGTTTATCTTCCAGCGGCGGCACTCCTTTTTGGTCGGTCTG
GTGCTTGGCTTTGCAGGCGCGATCTTGACGGTGGGAGAGGCAGCCTTACT
CAATCGATTCTGGAGGAAACGTCAGGCTGGAAGGCACTTCTAGATCAAGA
CGGTCATCCACGGAAAGTGGGTGATAGACAAGATGGAGTTCGAGGACGTG
GACGAGCTCGTGATCGCCCAGGGCAACAATCTGCAGGAACGGAAGCGTTT
GTTGTGGGAGACCTGTGACTGTGTGATAGTCTTGCCCGGCGGGACAGGGA
CGTGGGACGAATTAATGGAGGTGGCACGTGAGTTGGGGGAGGAGATAGCC
AAGGCGCAGTACCTCTGCATCAATGGCGGAGGCAAAAACGGGTGTATGGG
TGCCTTGAATGAGGGGGCGCGGGCCGGTGGAGGCAAGATGCGAGTCTGCG
TCTTTGCATCCTCAAGCTCACTTACACCGGAGCCATATCTCAAGGTGGCC
TGCCACAATTCTGTGGGTTTCGGGAAAATCCCCATCACCCTCGTCAATGT
GGATGGCTTTTACGACGGCATTATCCAGCAGGTGGCGCGGGCAGCCCGGG
ATAAAATCCTGTATGCCACCCCTGACGACACCATGCACGTGGAGACAACT
GCTCAAGGCGCTCTGTCCTGGTGCGCAAAGCGGGTGCAAGCCCAACGGGA
GGCTGGAGGTGCTCTAGGGGGCGACGCCCTGGTTTTGCAAGGACGAACCA
GGACGTTTATCTTCCAGCGGCGGCACTCCTTTTTGGTCGGTCTGGTGCTT
GGCTTTGCAGGCGCGATCTTGACGGTGGGAGAGGCAGCCTTACTCAATCG
ATTCTGGAGGAAACGTCAGGCTGGAAGGCACTTCTAGATCAAGACGGTCA
TCCACGGAAAGTGGGTGATAGACAAGATGGAGTTCGAGGACGTGGACGAG
CTCGTGATCGCCCAGGGCAACAATCTGCAGGAACGGAAGCGTTTGTTGTG
GGAGACCTGTGACTGTGTGATAGTCTTGCCCGGCGGGACAGGGACGTGGG
ACGAATTAATGGAGGTGGCACGTGAGTTGGGGGAGGAGATAGCCAAGGCG
CAGTACCTCTGCATCAATGGCGGAGGCAAAAACGGGTGTATGGGTGCCTT
GAATGAGGGGGCGCGGGCCGGTGGAGGCAAGATGCGAGTCTGCGTCTTTG
CATCCTCAAGCTCACTTACACCGGAGCCATATCTCAAGGTGGCCTGCCAC
AATTCTGTGGGTTTCGGGAAAATCCCCATCACCCTCGTCAATGTGGATGG
CTTTTACGACGGCATTATCCAGCAGGTGGCGCGGGCAGCCCGGGATAAAA
TCCTGTATGCCACCCCTGACGACACCATGCACGTGGAGACAACTGCTCAA
GGCGCTCTGTCCTGGTGCGCAAAGCGGGTGCAAGCCCAACGGGAGGCTGG
AGGTGCTCTAGGGGGCGACGCCCTGGTTTTGCAAGGACGAACCAGGACGT
TTATCTTCCAGCGGCGGCACTCCTTTTTGGTCGGTCTGGTGCTTGGCTTT
GCAGGCGCGATCTTGACGGTGGGAGAGGCAGCCTTACTCAATCGATTCTG
GAGGAAACGTCAGGCTGGAAGGCACTTCTAGATCAAGACGGTCATCCACG
GAAAGTGGGTGATAGACAAGATGGAGTTCGAGGACGTGGACGAGCTCGTG
ATCGCCCAGGGCAACAATCTGCAGGAACGGAAGCGTTTGTTGTGGGAGAC
CTGTGACTGTGTGATAGTCTTGCCCGGCGGGACAGGGACGTGGGACGAAT
TAATGGAGGTGGCACGTGAGTTGGGGGAGGAGATAGCCAAGGCGCAGTAC
CTCTGCATCAATGGCGGAGGCAAAAACGGGTGTATGGGTGCCTTGAATGA
GGGGGCGCGGGCCGGTGGAGGCAAGATGCGAGTCTGCGTCTTTGCATCCT
CAAGCTCACTTACACCGGAGCCATATCTCAAGGTGGCCTGCCACAATTCT
GTGGGTTTCGGGAAAATCCCCATCACCCTCGTCAATGTGGATGGCTTTTA
CGACGGCATTATCCAGCAGGTGGCGCGGGCAGCCCGGGATAAAATCCTGT
ATGCCACCCCTGACGACACCATGCACGTGGAGACAACTGCTCAAGGCGCT
CTGTCCTGGTGCGCAAAGCGGGTGCAAGCCCAACGGGAGGCTGGAGGTGC
TCTAGGGGGCGACGCCCTGGTTTTGCAAGGACGAACCAGGACGTTTATCT
TCCAGCGGCGGCACTCCTTTTTGGTCGGTCTGGTGCTTGGCTTTGCAGGC
GCGATCTTGACGGTGGGAGAGGCAGCCTTACTCAATCGATTCTGGAGGAA
ACGTCAGGCTGGAAGGCACTTCTAGATCAAGACGGTCATCCACGGAAAGT
GGGTGATAGACAAGATGGAGTTCGAGGACGTGGACGAGCTCGTGATCGCC
CAGGGCAACAATCTGCAGGAACGGAAGCGTTTGTTGTGGGAGACCTGTGA
CTGTGTGATAGTCTTGCCCGGCGGGACAGGGACGTGGGACGAATTAATGG
AGGTGGCACGTGAGTTGGGGGAGGAGATAGCCAAGGCGCAGTACCTCTGC
ATCAATGGCGGAGGCAAAAACGGGTGTATGGGTGCCTTGAATGAGGGGGC
GCGGGCCGGTGGAGGCAAGATGCGAGTCTGCGTCTTTGCATCCTCAAGCT
CACTTACACCGGAGCCATATCTCAAG

Synonyms

Publications