EWM23899.1, cds6779 (CDS) Nannochloropsis gaditana

Overview
NameEWM23899.1
Unique Namecds6779
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:521402..521458 -
Alignment locationCM002469.1:521207..521323 -
Alignment locationCM002469.1:520856..521032 -
Alignment locationCM002469.1:520178..520570 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23899.1
Producttigr00730 family protein
Orig transcript idgnl|cribi|Naga_100113g26.9965.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:521402..521458 -
CM002469.1supercontigCM002469.1:521207..521323 -
CM002469.1supercontigCM002469.1:520856..521032 -
CM002469.1supercontigCM002469.1:520178..520570 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005269LOG
IPR031100LOG_fam
Homology
BLAST of EWM23899.1 vs. NCBI_GenBank
Match: gi|585105181|gb|EWM23899.1| (tigr00730 family protein [Nannochloropsis gaditana])

HSP 1 Score: 506.908 bits (1304), Expect = 0.000e+0
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
Query:    1 MRVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKMEFEDVDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGFGKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQAQREAGGALGGDALVLQGRTRTFIFQRRHSFLVGLVLGFAGAILTVGEAALLNRFWRKRQAGRHF 247
            MRVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKMEFEDVDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGFGKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQAQREAGGALGGDALVLQGRTRTFIFQRRHSFLVGLVLGFAGAILTVGEAALLNRFWRKRQAGRHF
Sbjct:    1 MRVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKMEFEDVDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGFGKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQAQREAGGALGGDALVLQGRTRTFIFQRRHSFLVGLVLGFAGAILTVGEAALLNRFWRKRQAGRHF 247          
BLAST of EWM23899.1 vs. NCBI_GenBank
Match: gi|553181206|ref|XP_005853528.1| (lysine decarboxylase-like protein [Nannochloropsis gaditana CCMP526] >gi|422295534|gb|EKU22833.1| lysine decarboxylase-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 504.212 bits (1297), Expect = 1.591e-180
Identity = 246/247 (99.60%), Postives = 246/247 (99.60%), Query Frame = 0
Query:    1 MRVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKMEFEDVDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGFGKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQAQREAGGALGGDALVLQGRTRTFIFQRRHSFLVGLVLGFAGAILTVGEAALLNRFWRKRQAGRHF 247
            MRVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKMEFEDVDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGFGKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQAQREAGGALGGDALVLQGRTRTFIFQRRHSFLVGLVLGFAGAILTVGEAALLNRFWRKRQAGR F
Sbjct:    1 MRVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKMEFEDVDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGFGKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQAQREAGGALGGDALVLQGRTRTFIFQRRHSFLVGLVLGFAGAILTVGEAALLNRFWRKRQAGRRF 247          
BLAST of EWM23899.1 vs. NCBI_GenBank
Match: gi|299115374|emb|CBN74203.1| (putative decarboxylase family protein, lysine decarboxylase? [Ectocarpus siliculosus])

HSP 1 Score: 177.948 bits (450), Expect = 7.016e-52
Identity = 81/180 (45.00%), Postives = 113/180 (62.78%), Query Frame = 0
Query:    4 CVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKMEFEDVDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGFGKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQA 183
            CV+ SSS  TP+PYL VAR+LG  +A   + C+NG G+ GCMGALN+G     G+++ VIH  W++D  E   V +L +  G  LQERKR+L E  DC++ LPGG GTWDEL E+ C   +G   +PI +++V+ FY G   Q  RA  D++LYA  D  +H E+    A+ WC  ++ A
Sbjct:   12 CVYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRAGCMGALNDGVTERCGRVRGVIHEMWIVDASEHPQVKDLRVVGGQGLQERKRMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLCDVPICVLDVEDFYAGFKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWCVSQLGA 191          
BLAST of EWM23899.1 vs. NCBI_GenBank
Match: gi|224003807|ref|XP_002291575.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973351|gb|EED91682.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 176.022 bits (445), Expect = 1.518e-50
Identity = 95/245 (38.78%), Postives = 137/245 (55.92%), Query Frame = 0
Query:    1 MRVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKMEFED-----------VDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGFGKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQAQREAGGALGGDALVLQGRTRTFIFQRRHSFLVGLVL-GFAGAILTVGEAAL 233
            +R+C + SSSS TPE Y   A ELG  +A+  + C+NG G  GCM A+N+GA  G G+I  VIH  +++D  ++ +             EL++A+G++LQERKRLL +  D ++VLPGG GTWDEL E+AC   VGF  +PI  VNVDG+YD  +  + RA  D++LY  P D +H E T + A+ W    +   R        +      +TRT + +R  S + G    GF   +   G+  L
Sbjct:    8 LRICCYGSSSSKTPEKYTNAAYELGIILARRGHTCVNGAGSAGCMAAMNQGASDGNGRIVGVIHEMFIVDGSDWLEGSQHTFANNGGKHELLVAKGDDLQERKRLLVKGADGLVVLPGGPGTWDELWEMACARHVGFHNMPIVCVNVDGYYDTFMSILQRAHSDELLYKEPQDIVHFEETPEAAVKWIEDYLADPRNK------EKQQKTIKTRTSVLKRLQSNVSGSAFAGFQRMVSFFGDEGL 246          
BLAST of EWM23899.1 vs. NCBI_GenBank
Match: gi|551678990|ref|XP_005842247.1| (hypothetical protein GUITHDRAFT_159078 [Guillardia theta CCMP2712] >gi|428186417|gb|EKX55267.1| hypothetical protein GUITHDRAFT_159078 [Guillardia theta CCMP2712])

HSP 1 Score: 169.859 bits (429), Expect = 1.881e-49
Identity = 87/187 (46.52%), Postives = 124/187 (66.31%), Query Frame = 0
Query:    1 MRVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKMEFEDVDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGFGKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQAQREA 187
            MRVCV  SSSS TP+ YL  ++ELG  +A+  ++C+NGGGK GCMGALN+G    GG    VIH  +V+D  E   + ++++A+G+ L ERK+LL E  DCVI LPGG GTWDEL EV    S+GF  IPI ++N +GFYD     +A+A  DK++Y  P+  +  E++   AL++ A+R+  ++ A
Sbjct:    1 MRVCVCGSSSSSTPKAYLDASKELGRLLAERGHICVNGGGKTGCMGALNDGCIHAGGTTIGVIHEMFVVDGEEHTGLTQMIVARGDCLAERKKLLVEGADCVIALPGGVGTWDELWEVVAEVSLGFKNIPIVVINTNGFYDSFKAMLAKAMEDKLIYKGPETLVRFESSVVAALNF-AERMHWKKGA 186          
BLAST of EWM23899.1 vs. NCBI_GenBank
Match: gi|397633270|gb|EJK70908.1| (hypothetical protein THAOC_07697, partial [Thalassiosira oceanica])

HSP 1 Score: 171.014 bits (432), Expect = 4.710e-48
Identity = 86/197 (43.65%), Postives = 120/197 (60.91%), Query Frame = 0
Query:    1 MRVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKMEFEDVD---------ELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGFGKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQAQREAG 188
            +RVC + SSSS TP  Y   A +LG  +A+  + C+NG G +GCM A+N GA   GG+I  VIH K+V+D  ++ +           EL++A GN+LQERKRLL    D ++VLPGG GTWDEL E+AC   +GF  +PI  VNVDG+YD     + +A++D +LY+ P   +H E T + A+ W   +V   R  G
Sbjct:   28 LRVCCYGSSSSRTPARYTDAAYDLGSILARRGHTCVNGAGSSGCMAAMNSGASDSGGRIVGVIHEKFVVDGSDWLEGAHSVFGRGGAELLLATGNDLQERKRLLVRDADALVVLPGGPGTWDELWEMACAGHLGFHSMPIVCVNVDGYYDDFRNMLDKASKDGLLYSEPGAIVHFEDTPEEAVGWVEAQVGDGRITG 224          
BLAST of EWM23899.1 vs. NCBI_GenBank
Match: gi|219112085|ref|XP_002177794.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410679|gb|EEC50608.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 158.688 bits (400), Expect = 3.578e-45
Identity = 80/180 (44.44%), Postives = 112/180 (62.22%), Query Frame = 0
Query:    2 RVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIH---GKWVIDKMEFED--VDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGFGKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSW 176
            RVC + SSSSLTPE Y   AR LG  +A+  + C+NG G  GCM A+NEGA  G G I  VIH      V ++ +  D    E+++A G++LQERK+LL +  D ++VLPGG GTWDEL E+AC  ++G   +PI  VNVDG+Y+     + RA  D++    P + +H E +A+ A+ W
Sbjct:    1 RVCCYGSSSSLTPERYRTEARSLGYILARRGHTCVNGAGSFGCMAAMNEGAAIGNGHIVGVIHEMVAHPVFERSDHRDGPTREMLVAGGDDLQERKKLLVQGADALVVLPGGPGTWDELWEMACGRNIGLHALPIVCVNVDGYYEPFQAMLQRAYDDQLTKLPPHEIVHFEDSAEAAVRW 180          
BLAST of EWM23899.1 vs. NCBI_GenBank
Match: gi|1210526060|dbj|GAX14978.1| (uncharacterized protein FisN_12Lh326 [Fistulifera solaris])

HSP 1 Score: 162.54 bits (410), Expect = 4.553e-45
Identity = 94/240 (39.17%), Postives = 128/240 (53.33%), Query Frame = 0
Query:    1 MRVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKMEFED-------------------------VDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGF-GKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQAQREAGGALGGDALVLQGRTRTFIFQRRHSFL 214
            +RV  + SSSS TPE YLK AR LG  +AK  + C+NG G  GCM A+N+GA  G G I  VIH  W++D+ ++                           + E++IA G +LQERKRLL E    ++VLPGG GTWDEL E+AC   +G    +PI  VNVD FY   ++ + RA  D++L  TPD+ +H   TA+ A+ W  +   +   A  A      VL+ R  T    R+ SF 
Sbjct:   24 LRVTCYGSSSSKTPEKYLKEARNLGYILAKRGHTCVNGAGSFGCMAAMNDGAVEGNGHIVGVIHKMWLVDQGDWASTPTGKTLRDGGAHSVFDKASNKEGPIREMLIADGPDLQERKRLLVEGAHALVVLPGGPGTWDELWEMACARKLGLHNSLPIVCVNVDHFYQPFVEMMQRAYEDRLLEQTPDEVIHFVETAEEAVRWLEEIQDSDDFASKA------VLKKRPSTL---RKSSFF 254          
BLAST of EWM23899.1 vs. NCBI_GenBank
Match: gi|1210517491|dbj|GAX23748.1| (uncharacterized protein FisN_12Hh326 [Fistulifera solaris])

HSP 1 Score: 160.229 bits (404), Expect = 3.924e-44
Identity = 95/241 (39.42%), Postives = 128/241 (53.11%), Query Frame = 0
Query:    1 MRVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKME------------------FE--------DVDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGF-GKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQAQREAGGALGGDALVLQGRTRTFIFQRRHSFL 214
            +RV  + SSSS TPE YLK AR LG  +AK  + C+NG G  GCM A+N+GA  G G I  VIH  W++D+ +                  FE         + E++IA G +LQERKRLL E    ++VLPGG GTWDEL E+AC   +G    +PI  VNVD FY   ++ + RA  D++L   PD+ +H   TA+ A+ W  +   +   A  A      VL+ R  T    R+ SF 
Sbjct:   24 LRVTCYGSSSSKTPEKYLKEARNLGYILAKRGHTCVNGAGSFGCMAAMNDGAVEGNGHIVGVIHKMWLVDQGDWASTPTGKTLRDGGAHSVFEKSNNPSEGPIREMLIADGPDLQERKRLLVEGAHALVVLPGGPGTWDELWEMACARKLGLHNSLPIVCVNVDHFYQPFLEMMQRAYEDRLLEQKPDEVIHFVETAEEAVRWLEEIQNSDDFASKA------VLKKRPSTL---RKSSFF 255          
BLAST of EWM23899.1 vs. NCBI_GenBank
Match: gi|676398995|ref|XP_009042775.1| (hypothetical protein AURANDRAFT_35169 [Aureococcus anophagefferens] >gi|323446322|gb|EGB02527.1| hypothetical protein AURANDRAFT_35169 [Aureococcus anophagefferens])

HSP 1 Score: 137.887 bits (346), Expect = 1.470e-36
Identity = 85/194 (43.81%), Postives = 121/194 (62.37%), Query Frame = 0
Query:    1 MRVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKMEFEDVDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGFGKI-PITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQAQREAGGALGG 193
            MR+CV+ASSS+ T + ++   R LG  IA   ++ +NGGG+ G MGALNEG RA GG+I  VIH ++V+D  EF   +++V+A G++L ERKRLL E CD +IV+PGG GT DEL + A    +GF    P+ LVN+DG+YD  + Q+ RA  + +    P + +H       AL+WC    +AQ+ A     G
Sbjct:    1 MRICVYASSSTRTSDRFMAAGRALGAAIAAGGHVLVNGGGRAGGMGALNEGCRAAGGRIVCVIHERFVVDGEEFAGAEKMVVAGGDDLGERKRLLVEHCDALIVMPGGVGTLDELWDAASLQQLGFKTSRPVVLVNLDGYYDATLAQLRRAHDEGLTSKPPAEILHAVPDVGAALAWC----EAQQTADAYTAG 190          
The following BLAST results are available for this feature:
BLAST of EWM23899.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105181|gb|EWM23899.1|0.000e+0100.00tigr00730 family protein [Nannochloropsis gaditana... [more]
gi|553181206|ref|XP_005853528.1|1.591e-18099.60lysine decarboxylase-like protein [Nannochloropsis... [more]
gi|299115374|emb|CBN74203.1|7.016e-5245.00putative decarboxylase family protein, lysine deca... [more]
gi|224003807|ref|XP_002291575.1|1.518e-5038.78predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|551678990|ref|XP_005842247.1|1.881e-4946.52hypothetical protein GUITHDRAFT_159078 [Guillardia... [more]
gi|397633270|gb|EJK70908.1|4.710e-4843.65hypothetical protein THAOC_07697, partial [Thalass... [more]
gi|219112085|ref|XP_002177794.1|3.578e-4544.44predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1210526060|dbj|GAX14978.1|4.553e-4539.17uncharacterized protein FisN_12Lh326 [Fistulifera ... [more]
gi|1210517491|dbj|GAX23748.1|3.924e-4439.42uncharacterized protein FisN_12Hh326 [Fistulifera ... [more]
gi|676398995|ref|XP_009042775.1|1.470e-3643.81hypothetical protein AURANDRAFT_35169 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6795rna6795Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications