rna6793, rna6793 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6793
Unique Name	rna6793
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2580
Alignment location	CM002469.1:515619..518174 +

Link to JBrowse

Properties


Property Name	Value
Product	deah (asp-glu-ala-his) box polypeptide 35
Orig transcript id	gnl\|cribi\|Naga_100113g24.9967.mrna
Orig protein id	gnl\|cribi\|Naga_100113g24.9967
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:515619..518174 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100113g24	gene6567	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6793	rna6793-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23901.1	cds6777	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:515619..518174+
coding sequence from alignment at CM002469.1:515619..518174+

mRNA sequence

>rna6793 ID=rna6793|Name=rna6793|organism=Nannochloropsis gaditana|type=mRNA|length=2580bp
ACGAGATACGAATGGAAGCGGGCCTTCCGGTATGCGGTGATTAAGCAGCG
CATTGTAAGGACTCTGAAGATTGATAATTTCACGTCCCCTTGATTTTTGA
TGGGCTGAAATAGAAGCTTCGCGGCATCCGCATCTTGCAGGTGACTACAG
GCTTTTCCCCGCGCTCTCTCCAAAGATTCTGGACGAGGGAAGCAGGTAGC
GAGAAAGTTGTGCGACTATGCAATTTAATTAGAGGCTCTGGGATTCTGTC
TCCTCGAGGCATTTAACTCAGCCCACCAGATAACCGTGAACTACTGGATT
TTCCAGTAAGGCGTCTAGAACTTGCCACCATGTCATCGACGAATCCCTCC
ATGAACACCTCGTCGTCCATGAAGCGGTATGGATCGAAGCTTCATCAGAA
ACCCACGCCTGAAGAGGCGGTGGAGCGGCTCTCGCACTATCACGCCGCTC
ACCACCACTTCCACCGGGCCAAGAGCGTGATGCGTCGATCCGGTCGGATT
TTGATCGCCGGTGCTGGTTTCCTGGCAGACAGCTACGACATTTTTGTGAT
CAACCTCGCGCTTCAAATGATGCGGCAAAATGACTACGGGGTACCTCTAA
CTCCCGATATCCAGTCGACGGTTTCATTGATGACGGTGGTGGGTGCCTTA
ACGGGACAGATCTTGTTCGGTGTGTGCGGTGATATCATCGGCCGAAAGTG
GACGTTCATCTCAACCGCCGCGCTTACCATTATCGGTACCATCCTTCAAG
CTGCCGCGCAGCCTCGAATGATGGGCTTGAATATTTGGCAACAGTTGATG
CTTTTCCGCTTCTTCATGGGCGTGGGTGTGGGAGGAGAGTACCCCATGGC
TTCCACCGTGACGTCGGAGGGATCCTCGGCGGCGCATCGCGGTCGCAATT
TGGCCGCTGTGTTTTCTATGCAAGGTGTCGGCCGTGTTTTGTGTGGAATC
GTCATCCTTTTCTCGGTGCATGTGATCACGGACACCAACTGGCAATGGCG
CTTCTCGATCCTCTTCGGAGCTATTCCTATGATGGCATGTTTCCGTTTCC
GATGGATCCCGGAGTCGGAGACCTTTATGGAAGACGTGGGCGAGAAGACG
CCTCCCTCGGAGCGACTGTACGGGATTATGATGGCGGTGTGGGACAACCG
ACTCAAATTGTTGGGCACGGCAGGTGCCTGGTTTATCCTCGACGTGGTGT
TCTACGGCAACTCCTTGTTTTCGGCGGACGTGACAGAAGCGATGGGTGGC
GCGAACAAGACCCTTCAGGGCAACGCGTTGACCAACCTCTTCATCCAACT
CATGGCCATGCCCGGGTATGTTTGCGGTGTGCTGTTCATGGAAAGCATCG
GACGCAAGCGTTTGCAGATGATCGGTTTCACGGGCGAGATGATTATTTTC
GCCATCATGGCCATCTTTTACCGAGAGCTCAAAGGCTTGACAGGCCTTTT
CGTTTTCCTGTACGCCCTCACCTTCTTCTTCGATGACTTTGGTCCCAACC
TTACCACTTTCGTCATTCCCGCCGAGATTTTCCCCACCGCGGCCCGTGCC
ACCTGCCACGGACTCTCCGCTGCATCCGGTAAAGCTGGAGCTGCCGTCGG
CGGTGCCGCTTTTCTGAAGGTCACGAATATGTTCTGCCCCGGTGGCGTGT
GCGGCGACGATCACCAGCACCTGTTGGACAAGGGCGTGCGAGCCGTCTTC
ATTATTTGTAGCTGCATCGCCTTTGTCGGTTTGCTGTGGACCAAGTTTTT
GGTGGACGACACTCCGCACGAGTCTCTGGCATACGTGGAGGATGCTGATG
CCATCGAGCCGGCACTGCCGGGGGAAGTCGAGGAGCTGGAGGAGGCCGTC
GTGGAAGGGATCGAGATGGGGAAACTTCAAAAGCCTGAAGGCTATGTGAT
TCCTCCTCGCCAACCCTCCGCGTCGAACGGAGTGCAAGTTGCTTCGGGAA
CAAAGCAATGAGAGTCTGGTTGGGTAGCGATGGCTGGGGTAGGAGATATC
CTGTCCAACGCGTACCGGCTCCGCAAGGAATGAGAATATTCTCGTGCTGG
TGGTATGAGATATTAGCGGCGTGGTGGTTGGAAAACGGAGCATGATACCA
ATATCAGAGGAAAAGGAAACTGCTTTCTTGATGAAAGAGTCCTTGAGGGT
TTCTCGATCTTCCTAGATCCCGGCCGTGATGAGCATTATCAGTCTTCCCC
GCGCGATATTTATGTATGATCGGTGCGACTACGTGTGCATACAATATGAT
AAGCAGGATTACGACGTATCAAGGTGATATGAGGGAAGGTATATGGAAGG
AGTTAGGGGAATGAGGACGTCGAATCAGGTCTATGAGCTGTCGATGAGGG
CAGGTGAGCGGATCAGAAATAGGAAGAAATAATGATGGATCTTTACATTT
ACGTAGGTAATTGGGGAGAGCGGGAGCTTGCGGTCAATCGAAACGAAACA
AAGTGATGAACAACATTCTCTTATCTTAGTCCACGTCAAGCTTTCTGATC
GCATCCGTAGTCTCAACATTCTGACCACGTCTTGCTTTTGAAAGGTTCAA
ATACTACTGCTTCAAGCAAAATACTAGACG

protein sequence of rna6793

>rna6793-protein ID=rna6793-protein|Name=rna6793|organism=Nannochloropsis gaditana|type=polypeptide|length=782bp
MSMEARKVHVGAVGLSQLPKKMKRPREEVGSHQLTAFQPTPSRRQHQNAR
QQLPIWRQKTYVVETVRRHASVVLVGETGSGKSTQVPQFLLDAGFCAGIV
EAQGSTPSPIRARKLIACTQPRRVAAITVAGRVAEEMGCALGQAVGYAVR
FDDKTGPRTVIKYMTDGVLLREAMTDPLLTRYAVIILDEAHERSLQTDIL
FGLIRRAQRERKDLRVVVMSATLDVEVFRRFFETGGRKEEKALIKRHGEN
GKHEKGMLSREGQASTVGVVRIEGRQYGVEVYYCEEAQEDSIDAACLAVL
QIHESEPLPGDILVFLSGQEDIEALAELLSESAGTDTSIGKTGLCMEICP
LYSALAPEEQAKAFHPPKGPAKSTRKVILATNIAETSVTINGIRHVVDTG
WVKVRRYVPSTGLDSLKVTQIARAQAQQRTGRAGREAPGKCYRLFTESAF
ERLDAVPQPEIQRVNLTQVVLQLLAMGLDDPQHFDYLSPPSATALARAFE
TLLALGCIAEGGLSPGGNVDGTRIVIPEKDDRQAVEAQADQKPSGPAKSR
PVITPHGRRVASLPLDPVYAHFVLRASELGCIFEALTAVSMLSAENVLYM
PSPHGGPDAAEQRNRATTAHRALAAYDGDVPTLVHIYERWVAAKKGNRWC
WDHFVNARAMKKADEVREQLLLLVRRLGLDPSQSCGNERQIFLRSLAAGL
FLNVARRQPATSPALGKYCYKMLANGREAAIHPSSVLHARNPAPQCVVFT
EVLTTSRPYIRGVSIVDPADLQELVPQFFGRA

mRNA from alignment at CM002469.1:515619..518174+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6793 ID=rna6793|Name=rna6793|organism=Nannochloropsis gaditana|type=mRNA|length=2556bp|location=Sequence derived from alignment at CM002469.1:515619..518174+ (Nannochloropsis gaditana)
GTAGGTTAGGGTGCTAGATGTCAATGGAGGCGAGAAAAGTCCATGTTGGA
GCTGTTGGCCTTTCTCAATTGCCCAAAAAGATGAAGCGGCCGCGTGAAGA
GGTGGGCTCTCATCAACTTACTGCCTTCCAGCCAACTCCCTCGCGGCGGC
AGCACCAAAACGCACGCCAGCAGTTGCCCATCTGGCGACAGAAAACTTAC
GTTGTCGAGACTGTGCGGCGACATGCCAGTGTTGTTCTCGTGGGCGAGAC
TGGCAGTGGAAAGAGTACTCAGGTACCTCAGTTTTTGCTCGATGCTGGTT
TTTGCGCTGGCATCGTCGAGGCTCAAGGTAGCACACCATCGCCGATCCGG
GCACGCAAACTGATAGCATGTACTCAACCACGACGCGTGGCGGCCATTAC
TGTGGCTGGGCGGGTAGCCGAAGAGATGGGTTGTGCGTTAGGCCAAGCCG
TCGGCTATGCGGTTCGCTTCGACGACAAGACCGGCCCGCGCACTGTCATC
AAGTACATGACCGACGGTGTGCTTTTACGAGAAGCCATGACTGACCCACT
TTTAACGCGGTACGCTGTTATAATCTTGGATGAAGCTCACGAACGGTCGT
TGCAGACGGATATCTTGTTTGGGTTGATCCGGCGTGCGCAGCGAGAACGC
AAGGATCTGCGCGTAGTGGTGATGTCAGCTACCCTGGATGTGGAGGTGTT
CCGGCGATTTTTTGAgactggagggagaaaagaagagaaggcaCTGATCA
AAAGGCACGGAGAAAACGGGAAGCATGAGAAAGGAATGCTTTCGCGCGAA
GGCCAGGCGTCCACGGTAGGCGTCGTGCGGATCGAGGGCCGACAGTACGG
CGTGGAGGTGTACTACTGCGAGGAGGCACAAGAGGATTCCATCGACGCAG
CTTGTCTGGCCGTCCTTCAAATCCACGAGAGCGAGCCCCTCCCCGGGGAC
ATTTTGGTGTTCCTCTCCGGTCAGGAAGACATCGAGGCCCTTGCCGAGCT
TCTGTCGGAGAGCGCCGGAACCGATACTTCTATCGGCAAGACAGGGCTAT
GCATGGAAATTTGCCCTCTCTACTCAGCGCTAGCCCCGGAGGAACAGGCC
AAGGCCTTTCATCCTCCCAAGGGCCCCGCGAAGAGCACCCGAAAAGTCAT
ACTGGCCACGAACATCGCCGAGACCTCGGTTACGATCAACGGTATCCGAC
ACGTTGTTGACACGGGCTGGGTTAAGGTTCGACGCTACGTGCCTTCCACC
GGACTCGACAGCCTCAAGGTCACACAGATTGCCCGAGCTCAGGCTCAGCA
ACGGACAGGCCGGGCCGGCCGGGAGGCGCCAGGGAAGTGTTATCGCCTCT
TCACCGAGTCCGCCTTCGAACGTCTGGACGCCGTGCCCCAGCCAGAGATT
CAGCGGGTAAACCTCACGCAGGTCGTGCTGCAACTCCTGGCCATGGGTTT
GGACGACCCTCAGCATTTCGACTACCTGTCTCCCCCGTCAGCTACGGCCT
TGGCCCGGGCCTTTGAGACCTTACTCGCCCTGGGCTGCATCGCAGAGGGA
GGCTTGTCACCTGGAGGGAACGTTGATGGTACACGCATTGTAATCCCAGA
AAAGGACGACAGACAGGCTGTGGAGGCCCAGGCGGACCAGAAGCCATCGG
GCCCTGCCAAGTCGCGCCCGGTAATCACCCCGCACGGCCGTCGAgtggcc
tccctgcccctaGACCCCGTCTACGCACACTTCGTCCTCCGCGCCAGCGA
ACTCGGCTGTATCTTTGAGGCATTGACTGCCGTTTCCATGCTGTCAGCGG
AGAACGTCCTTTACATGCCCTCCCCACACGGAGGCCCTGATGCAGCTGAG
CAACGAAACCGCGCCACGACTGCTCATCGCGCGTTGGCAGCCTACGATGG
AGATGTTCCTACTCTGGTGCACATTTATGAGCGGTGggtggcggcgaaga
agggaaatCGATGGTGCTGGGATCATTTCGTGAACGCGCGGGCCATGAAA
AAGGCCGACGAGGTGCGGGAGCAATTGCTGCTTCTGGTCCGTCGCCTGGG
CTTAGACCCTTCCCAGTCCTGCGGGAACGAGCGGCAGATCTTTCTCCGGA
GTCTGGCTGCGGGACTGTTTTTGAACGTCGCACGGCGCCAGCCCgctacc
tcccccgccctgggcAAATATTGCTACAAGATGCTGGCGaacgggcggga
ggcggccattcACCCTTCCAGTGTCCTGCATGCCCGGAATCCGGCCCCCC
AGTGCGTCGTCTTTACGGAGGTCTTGACAACCAGTCGTCCTTACATTCGC
GGCGTCAGCATCGTGGACCCTGCTGATTTGCAGGAACTGGTGCCGCAATT
TTTTGGGCGGGCatgaggggaagagagagggcaaagcaAGAGGGTGAGGC
TTGACGTCGAGtccagggagaggaatgcCGAGTAAGATGGGCATTGGCAG
GTTGAAGCTATCCTTGATTGTGAGGAAATGCTGTGTCTTATTTTAGAGGC
CGAGTGGCTTTCCGGAGCAAGAACAAAGTAAAGCCCGTGCGACGCCCTTC
TTTTAC

Coding sequence (CDS) from alignment at CM002469.1:515619..518174+

>rna6793 ID=rna6793|Name=rna6793|organism=Nannochloropsis gaditana|type=CDS|length=2349bp|location=Sequence derived from alignment at CM002469.1:515619..518174+ (Nannochloropsis gaditana)
ATGTCAATGGAGGCGAGAAAAGTCCATGTTGGAGCTGTTGGCCTTTCTCA
ATTGCCCAAAAAGATGAAGCGGCCGCGTGAAGAGGTGGGCTCTCATCAAC
TTACTGCCTTCCAGCCAACTCCCTCGCGGCGGCAGCACCAAAACGCACGC
CAGCAGTTGCCCATCTGGCGACAGAAAACTTACGTTGTCGAGACTGTGCG
GCGACATGCCAGTGTTGTTCTCGTGGGCGAGACTGGCAGTGGAAAGAGTA
CTCAGGTACCTCAGTTTTTGCTCGATGCTGGTTTTTGCGCTGGCATCGTC
GAGGCTCAAGGTAGCACACCATCGCCGATCCGGGCACGCAAACTGATAGC
ATGTACTCAACCACGACGCGTGGCGGCCATTACTGTGGCTGGGCGGGTAG
CCGAAGAGATGGGTTGTGCGTTAGGCCAAGCCGTCGGCTATGCGGTTCGC
TTCGACGACAAGACCGGCCCGCGCACTGTCATCAAGTACATGACCGACGG
TGTGCTTTTACGAGAAGCCATGACTGACCCACTTTTAACGCGGTACGCTG
TTATAATCTTGGATGAAGCTCACGAACGGTCGTTGCAGACGGATATCTTG
TTTGGGTTGATCCGGCGTGCGCAGCGAGAACGCAAGGATCTGCGCGTAGT
GGTGATGTCAGCTACCCTGGATGTGGAGGTGTTCCGGCGATTTTTTGAga
ctggagggagaaaagaagagaaggcaCTGATCAAAAGGCACGGAGAAAAC
GGGAAGCATGAGAAAGGAATGCTTTCGCGCGAAGGCCAGGCGTCCACGGT
AGGCGTCGTGCGGATCGAGGGCCGACAGTACGGCGTGGAGGTGTACTACT
GCGAGGAGGCACAAGAGGATTCCATCGACGCAGCTTGTCTGGCCGTCCTT
CAAATCCACGAGAGCGAGCCCCTCCCCGGGGACATTTTGGTGTTCCTCTC
CGGTCAGGAAGACATCGAGGCCCTTGCCGAGCTTCTGTCGGAGAGCGCCG
GAACCGATACTTCTATCGGCAAGACAGGGCTATGCATGGAAATTTGCCCT
CTCTACTCAGCGCTAGCCCCGGAGGAACAGGCCAAGGCCTTTCATCCTCC
CAAGGGCCCCGCGAAGAGCACCCGAAAAGTCATACTGGCCACGAACATCG
CCGAGACCTCGGTTACGATCAACGGTATCCGACACGTTGTTGACACGGGC
TGGGTTAAGGTTCGACGCTACGTGCCTTCCACCGGACTCGACAGCCTCAA
GGTCACACAGATTGCCCGAGCTCAGGCTCAGCAACGGACAGGCCGGGCCG
GCCGGGAGGCGCCAGGGAAGTGTTATCGCCTCTTCACCGAGTCCGCCTTC
GAACGTCTGGACGCCGTGCCCCAGCCAGAGATTCAGCGGGTAAACCTCAC
GCAGGTCGTGCTGCAACTCCTGGCCATGGGTTTGGACGACCCTCAGCATT
TCGACTACCTGTCTCCCCCGTCAGCTACGGCCTTGGCCCGGGCCTTTGAG
ACCTTACTCGCCCTGGGCTGCATCGCAGAGGGAGGCTTGTCACCTGGAGG
GAACGTTGATGGTACACGCATTGTAATCCCAGAAAAGGACGACAGACAGG
CTGTGGAGGCCCAGGCGGACCAGAAGCCATCGGGCCCTGCCAAGTCGCGC
CCGGTAATCACCCCGCACGGCCGTCGAgtggcctccctgcccctaGACCC
CGTCTACGCACACTTCGTCCTCCGCGCCAGCGAACTCGGCTGTATCTTTG
AGGCATTGACTGCCGTTTCCATGCTGTCAGCGGAGAACGTCCTTTACATG
CCCTCCCCACACGGAGGCCCTGATGCAGCTGAGCAACGAAACCGCGCCAC
GACTGCTCATCGCGCGTTGGCAGCCTACGATGGAGATGTTCCTACTCTGG
TGCACATTTATGAGCGGTGggtggcggcgaagaagggaaatCGATGGTGC
TGGGATCATTTCGTGAACGCGCGGGCCATGAAAAAGGCCGACGAGGTGCG
GGAGCAATTGCTGCTTCTGGTCCGTCGCCTGGGCTTAGACCCTTCCCAGT
CCTGCGGGAACGAGCGGCAGATCTTTCTCCGGAGTCTGGCTGCGGGACTG
TTTTTGAACGTCGCACGGCGCCAGCCCgctacctcccccgccctgggcAA
ATATTGCTACAAGATGCTGGCGaacgggcgggaggcggccattcACCCTT
CCAGTGTCCTGCATGCCCGGAATCCGGCCCCCCAGTGCGTCGTCTTTACG
GAGGTCTTGACAACCAGTCGTCCTTACATTCGCGGCGTCAGCATCGTGGA
CCCTGCTGATTTGCAGGAACTGGTGCCGCAATTTTTTGGGCGGGCatga

Synonyms

Publications