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Properties
| Property Name | Value |
|---|
| Product | vacuolar h atpase b subunit |
| Orig transcript id | gnl|cribi|Naga_100113g20.9980.mrna |
| Orig protein id | gnl|cribi|Naga_100113g20.9980 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:506875..509303 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6790 ID=rna6790|Name=rna6790|organism=Nannochloropsis gaditana|type=mRNA|length=820bp
GATCAAGAAGGTAAAGGACCAATGCGGCGCAAAGGTTTCGAGAGCACTTA
GAGCGAGTGACATGGAAGGCATCTCGGCTGCCCGGGAGTCATTTTCTGTT
GCCATGTTTGTTTCCTCCCCACCCTAAGACTGTAACCTCCTACTGCATGT
GCTTCCCTGAACCCCGTTATATATTTCGTTTGGCCCTTGCATGCCCTTTT
TATGACAGTCTTTCGCACCGAAAAGTTTCCCGTACGTAGACTGATGGCGT
GTTGTTCTTTCCCCTTGCTTTCTTCCACAGGAAAGGCGGGCATATGGACG
GCCTCCGCAAGGAGTTTGAGAAGGCTCTGCCACCTTCACCGCTCCTTCGG
ACGTGCAAGAGATGCCACACGCAGTTTGACCCTAAACACAATGACAAGCG
GGCCTGCCGCTACCACCCTCATTCCTATTCTGGAGAGACAGCCCAACGTT
GGCTGCCTCCTGGCGAGAATAATGGGGAGGGCCGCAAGGTTGTCCATCAT
TGGTGGTGTTGTTCTTCCGAGAACGTGGATGCTCCAGGCTGTGAGACGCA
GCCCCATGAGAGCTACGACTGATCACGCAATCAAAAAGACTGGAAGGAGG
CTTCGTTGGCGGCCATGTCATGCATATAGACTGTACATTATGCGTTGCGC
TTCGACTTGATAGGAAGAGGAGAAGGCACCCCGCTCTATGGAAGACACAC
GATGAAAGCAGGGAAAAAGGATTATTCCGATTGTTTTGAGGGACTTCCAG
CTTTTTTTCACATTGTTGGATAGAGCCCTCAAAAAGGGAAAGAAATCTTT
GCAATCTGGTGGCTTCTTGT back to topprotein sequence of rna6790 >rna6790-protein ID=rna6790-protein|Name=rna6790|organism=Nannochloropsis gaditana|type=polypeptide|length=568bp
MLGTLVRSAPSLGGWDPMHDKSGWPFVSTRGLVHRIPWLRMRGPLFLTPP
DNSHAFIHTSAWTSGNYKESSTMAPLSTGDVVKSYSLNPRIQYSTIQGVN
GPLVILDNVKLPKFAEIVNLTLGNGEKRQGQVLEVAGKKAVVQVFEGTSG
IDNRHTTAEFTGDVLRTAVSEEVLGRSFNGSGKVIDGAPPVLPEQYLDIN
GQPINPSCRDYPRAMIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAA
QIARQASLVKLKDSLDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQ
RSVLFLNLANDPTIERIITPRLALTTAEYLAYEREMHVLIILTDMSSYCD
ALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILT
MPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSA
IGEGMTRNDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFV
DKFEGKYINQGSTANRTVFESLDLAWSLLRIFPRDLLKKITKNELNTYYA
RRTAAGAGVGGEESKAAK back to topmRNA from alignment at CM002469.1:506875..509303+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6790 ID=rna6790|Name=rna6790|organism=Nannochloropsis gaditana|type=mRNA|length=2429bp|location=Sequence derived from alignment at CM002469.1:506875..509303+ (Nannochloropsis gaditana)
TCTGAGAAAGATTCCCCCCGTCCTAACTTCATGCTTGGCACGTTGGTGCG
GTCCGCACCGTCTCTGGGAGGCTGGGATCCTATGCATGACAAGTCCGGGT
GGCCTTTTGTTTCGACGCGTGGTCTCGTCCACCGGATTCCTTGGCTGCGC
ATGAGAGGGCCTCTCTTCTTAACCCCGCCCGACAACTCACATGCCTTCAT
ACACACCTCTGCGTGGACATCAGGCAATTATAAGGAAAGCAGCACGATGG
CTCCTCTTTCCACGGGCGACGTTGTCAAGAGCTACAGCCTTAACCCGCGG
ATTCAGGTATGTAGCTTGGGCCTTTGAAATGTTAACAAACGGAGAAGCGC
GTCTCACCCTTGGGAACCAAGTGGAAAGCCCTTGGCGCTGGAGGTCGCGC
AGGACCGTGCACGAGGGAACGGGAAATCATGTGTGCTTCGAGGTCGtctt
ggaggaagagtgTAAACGAAGGACCAGCGTTGTGTTTTTTCACGTGCCCG
CAGGCTGTGTTTGAAGCGATGTGATATTTCGATCCAATTCGTAGTTTGTT
GTTGCGACGCGTCCGTGAGAACATATTTACGGCGCGTGACCGCTCCGAGC
CCCAGTCACCATGGAAACCCATTGAATTCTATTCTCCTCGCGCGCAGTAC
TCGACTATCCAGGGCGTGAACGGTCCCCTGGTCATCCTGGACAATGTGAA
GTTGCCTAAATTCGCGGAGATCGTGAACTTGACCCTGGGTAATGGGGAAA
AGCGCCAGGGACAGGTGCTagaggtggcggggaagaaggccgTGGTGCAA
GTCTTCGAGGGAACGTCGGGCATCGACAACCGGCATACGACGGCGGAGTT
CACGGGGGATGTGCTGCGCACCGCTGTTTCTGAAGAGGTCCTAGGCCGCT
CCTTCAACGGTTCTGGCAAGGTCATCGACGgcgccccccctgtccttcca
gAGCAGTACCTGGACATCAACGGGCAGCCGATCAACCCTTCCTGCCGTGA
CTACCCGCGTGCCATGATTCAGACGGGCATTTCCGCCATCGACGTGATGA
ACTCCGTGGCGCGGGGGCAGAAGATCCCGATTTTCTCCGCCGCCGGCCTT
CCCCACAACGAGGTTGCCGCGCAAATCGCCCGCCAAGCCTCGTTGGTTAA
GCTTAAGGACTCGCTAGACTCGCACGACGACAATTTCACGGTGGTGTTCG
GCGCCATGGGTGTGAACATGGAGACGGCTCGCTTCTTCCGCACCTCCTTC
GAGGAATCGGGGGCGATGCAGCGCTCTGTCCTCTTTTTGAACTTGGCGAA
CGACCCGACCATCGAGCGCATTATCACCCCCCGTCTGGCCCTGACCACGG
CGGAGTATTTGGCCTACGAGCGCGAGATGCACGTGCTCATCATCCTCACA
GACATGTCCTCCTACTGCGACGCCCTCCGAGAGGTGTCGGCGGCGCGAGA
GGAAGTGCCCGGGCGGCGTGGCTACCCCGGCTACATGTACACAGATCTCT
CTACCATCTACGAGCGCGCCGGCCGCATCGTGGGCAAGAACGGCTCCATC
ACCCAGCTCCCCATCCTGACCATGCCCAACGACGACATCACCCACCCCAT
CCCCGACCTGACGGGCTACATCACCGAGGGCCAGATCTACCTGGACCGGG
CGCTCCACAACCGAGAAATCTTCCCGCCCATCaacgtcctcccctcgctc
tcgcGCTTGATGAAGTCGGCCatcggggaggggatgacccGCAACGACCA
CGGCTCGGTTTCGAACCAGCTGTACGCCAATTACGCCCTGGGCAAGGACG
TGGCCGCGAtgaaggccgtggtgggagaggaggcactATCGCTCGAGGAC
CATCTGTACCTGCAGTTTGTGGACAAGTTTGAAGGGAAGTACATCAACCA
GGGGTCAACGGCCAACCGCACCGTCTTCGAGTCCCTGGACCTGGCctggt
ccctcctccgaaTCTTCCCCCGCGATCTCCTGAAGAAGATCACCAAGAAC
GAGCTCAACACCTACTACGCTCGCAGGACagccgcgggggcgggcgtggg
gggagaggaatcaAAAGCGGCGAaatagggaaggagagagggaagagata
GGAAGTAGGAGACGGTCAGGGTCAGGAGAGGGCGCAgacgggggtggagg
ggaagaggcagtgggaaggcaggcaaggagagacgggaaaggagcgaggg
aagggtgtTGAGAATGTGGATATGGGGGCGCGTTTCTGCCCGGACGACTG
GGTTGCTttgatggagaaggcggtgccctgggaaagggagggtcgcAGGT
CATTCAGGGGGGACGAGCTTGAGGCTCGGATGAGAGCTTCGTTTGTGTGG
GAGAAGGATAAGATTATCAAAGGCATCGCACGCAGATTGTGGAATCAAAT
ATTGAGCACATAACCTAGACGGGTTGAAA back to topCoding sequence (CDS) from alignment at CM002469.1:506875..509303+ >rna6790 ID=rna6790|Name=rna6790|organism=Nannochloropsis gaditana|type=CDS|length=3414bp|location=Sequence derived from alignment at CM002469.1:506875..509303+ (Nannochloropsis gaditana)
ATGCTTGGCACGTTGGTGCGGTCCGCACCGTCTCTGGGAGGCTGGGATCC
TATGCATGACAAGTCCGGGTGGCCTTTTGTTTCGACGCGTGGTCTCGTCC
ACCGGATTCCTTGGCTGCGCATGAGAGGGCCTCTCTTCTTAACCCCGCCC
GACAACTCACATGCCTTCATACACACCTCTGCGTGGACATCAGGCAATTA
TAAGGAAAGCAGCACGATGGCTCCTCTTTCCACGGGCGACGTTGTCAAGA
GCTACAGCCTTAACCCGCGGATTCAGTACTCGACTATCCAGGGCGTGAAC
GGTCCCCTGGTCATCCTGGACAATGTGAAGTTGCCTAAATTCGCGGAGAT
CGTGAACTTGACCCTGGGTAATGGGGAAAAGCGCCAGGGACAGGTGCTag
aggtggcggggaagaaggccgTGGTGCAAGTCTTCGAGGGAACGTCGGGC
ATCGACAACCGGCATACGACGGCGGAGTTCACGGGGGATGTGCTGCGCAC
CGCTGTTTCTGAAGAGGTCCTAGGCCGCTCCTTCAACGGTTCTGGCAAGG
TCATCGACGgcgccccccctgtccttccagAGCAGTACCTGGACATCAAC
GGGCAGCCGATCAACCCTTCCTGCCGTGACTACCCGCGTGCCATGATTCA
GACGGGCATTTCCGCCATCGACGTGATGAACTCCGTGGCGCGGGGGCAGA
AGATCCCGATTTTCTCCGCCGCCGGCCTTCCCCACAACGAGGTTGCCGCG
CAAATCGCCCGCCAAGCCTCGTTGGTTAAGCTTAAGGACTCGCTAGACTC
GCACGACGACAATTTCACGGTGGTGTTCGGCGCCATGGGTGTGAACATGG
AGACGGCTCGCTTCTTCCGCACCTCCTTCGAGGAATCGGGGGCGATGCAG
CGCTCTGTCCTCTTTTTGAACTTGGCGAACGACCCGACCATCGAGCGCAT
TATCACCCCCCGTCTGGCCCTGACCACGGCGGAGTATTTGGCCTACGAGC
GCGAGATGCACGTGCTCATCATCCTCACAGACATGTCCTCCTACTGCGAC
GCCCTCCGAGAGGTGTCGGCGGCGCGAGAGGAAGTGCCCGGGCGGCGTGG
CTACCCCGGCTACATGTACACAGATCTCTCTACCATCTACGAGCGCGCCG
GCCGCATCGTGGGCAAGAACGGCTCCATCACCCAGCTCCCCATCCTGACC
ATGCCCAACGACGACATCACCCACCCCATCCCCGACCTGACGGGCTACAT
CACCGAGGGCCAGATCTACCTGGACCGGGCGCTCCACAACCGAGAAATCT
TCCCGCCCATCaacgtcctcccctcgctctcgcGCTTGATGAAGTCGGCC
atcggggaggggatgacccGCAACGACCACGGCTCGGTTTCGAACCAGCT
GTACGCCAATTACGCCCTGGGCAAGGACGTGGCCGCGAtgaaggccgtgg
tgggagaggaggcactATCGCTCGAGGACCATCTGTACCTGCAGTTTGTG
GACAAGTTTGAAGGGAAGTACATCAACCAGGGGTCAACGGCCAACCGCAC
CGTCTTCGAGTCCCTGGACCTGGCctggtccctcctccgaaTCTTCCCCC
GCGATCTCCTGAAGAAGATCACCAAGAACGAGCTCAACACCTACTACGCT
CGCAGGACagccgcgggggcgggcgtggggggagaggaatcaAAAGCGGC
GAaatagATGCTTGGCACGTTGGTGCGGTCCGCACCGTCTCTGGGAGGCT
GGGATCCTATGCATGACAAGTCCGGGTGGCCTTTTGTTTCGACGCGTGGT
CTCGTCCACCGGATTCCTTGGCTGCGCATGAGAGGGCCTCTCTTCTTAAC
CCCGCCCGACAACTCACATGCCTTCATACACACCTCTGCGTGGACATCAG
GCAATTATAAGGAAAGCAGCACGATGGCTCCTCTTTCCACGGGCGACGTT
GTCAAGAGCTACAGCCTTAACCCGCGGATTCAGTACTCGACTATCCAGGG
CGTGAACGGTCCCCTGGTCATCCTGGACAATGTGAAGTTGCCTAAATTCG
CGGAGATCGTGAACTTGACCCTGGGTAATGGGGAAAAGCGCCAGGGACAG
GTGCTagaggtggcggggaagaaggccgTGGTGCAAGTCTTCGAGGGAAC
GTCGGGCATCGACAACCGGCATACGACGGCGGAGTTCACGGGGGATGTGC
TGCGCACCGCTGTTTCTGAAGAGGTCCTAGGCCGCTCCTTCAACGGTTCT
GGCAAGGTCATCGACGgcgccccccctgtccttccagAGCAGTACCTGGA
CATCAACGGGCAGCCGATCAACCCTTCCTGCCGTGACTACCCGCGTGCCA
TGATTCAGACGGGCATTTCCGCCATCGACGTGATGAACTCCGTGGCGCGG
GGGCAGAAGATCCCGATTTTCTCCGCCGCCGGCCTTCCCCACAACGAGGT
TGCCGCGCAAATCGCCCGCCAAGCCTCGTTGGTTAAGCTTAAGGACTCGC
TAGACTCGCACGACGACAATTTCACGGTGGTGTTCGGCGCCATGGGTGTG
AACATGGAGACGGCTCGCTTCTTCCGCACCTCCTTCGAGGAATCGGGGGC
GATGCAGCGCTCTGTCCTCTTTTTGAACTTGGCGAACGACCCGACCATCG
AGCGCATTATCACCCCCCGTCTGGCCCTGACCACGGCGGAGTATTTGGCC
TACGAGCGCGAGATGCACGTGCTCATCATCCTCACAGACATGTCCTCCTA
CTGCGACGCCCTCCGAGAGGTGTCGGCGGCGCGAGAGGAAGTGCCCGGGC
GGCGTGGCTACCCCGGCTACATGTACACAGATCTCTCTACCATCTACGAG
CGCGCCGGCCGCATCGTGGGCAAGAACGGCTCCATCACCCAGCTCCCCAT
CCTGACCATGCCCAACGACGACATCACCCACCCCATCCCCGACCTGACGG
GCTACATCACCGAGGGCCAGATCTACCTGGACCGGGCGCTCCACAACCGA
GAAATCTTCCCGCCCATCaacgtcctcccctcgctctcgcGCTTGATGAA
GTCGGCCatcggggaggggatgacccGCAACGACCACGGCTCGGTTTCGA
ACCAGCTGTACGCCAATTACGCCCTGGGCAAGGACGTGGCCGCGAtgaag
gccgtggtgggagaggaggcactATCGCTCGAGGACCATCTGTACCTGCA
GTTTGTGGACAAGTTTGAAGGGAAGTACATCAACCAGGGGTCAACGGCCA
ACCGCACCGTCTTCGAGTCCCTGGACCTGGCctggtccctcctccgaaTC
TTCCCCCGCGATCTCCTGAAGAAGATCACCAAGAACGAGCTCAACACCTA
CTACGCTCGCAGGACagccgcgggggcgggcgtggggggagaggaatcaA
AAGCGGCGAaatag back to top
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