rna6787, rna6787 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6787
Unique Name	rna6787
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1652
Alignment location	CM002469.1:500466..502069 +

Link to JBrowse

Properties


Property Name	Value
Product	ferredoxin-dependent bilin reductase
Orig transcript id	gnl\|cribi\|Naga_100113g16.9978.mrna
Orig protein id	gnl\|cribi\|Naga_100113g16.9978
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:500466..502069 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100113g16	gene6561	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6787	rna6787-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23912.1	cds6771	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:500466..502069+
coding sequence from alignment at CM002469.1:500466..502069+

mRNA sequence

>rna6787 ID=rna6787|Name=rna6787|organism=Nannochloropsis gaditana|type=mRNA|length=1652bp
GATGGATACCATGCTATTAATTCTTTCAATATGTCTAGCTTAATAATTAG
AGGCATTCTGTGCTGTCATGGCGTTATCACGCTGGTCTCCGCTCCTTTTT
GGGGGAGAACGAAGTGTTGTAAAGGTCACCTTCTTGCAAGTGTTACAGAG
CGTGTGCCTAACCCTGTTTCAGCCAAAGACACGCATGGCTCTCTGTCCAT
CATTCGATTCCATTCCACCTTAAAATATGCCTGAGAGTTTACACGCATCT
CTCACAGGATACACCTTCTTGCAAGTGTTACAGAGCGTGTGCCTAACCCT
GTTTCAGCCAAAGACACGCATGGCTCTCTGTCCATCATTCGATTCCATTC
TACCTTAAAATATGCCTGAGAGTTTATACGCATCTCTCACAGGATACATA
CCGGTCATGGGCGACGCCACTTCCGAGCAGCTTCCCTCGGGTGGCGCTGC
CGGTGCGATGAGTAGCCGGAGCCCCAGTCTCGTGTCACATTCGTCTCGCG
CAACTACTAAAGACGCTCAGGCAGACGAGGATTCTCCCATGCCTAGCTTG
TTGAGACGTATCTCAAACTCTATCCAGTTTAAGCGCAAAGGCTCTCATCT
ACCGTTGCCATCGGCCGACGAGATTCCAGCGAATTTCTTGGCCTCCTGTA
AAGGAAACGTGGAAAAGGCGGGGCGGAAATGGCAGGTCTCGAAGCAGTGG
CGGGAGGAAAATGACATCGACCACATTCTGCAGCGTCCGCATCCACACTA
CGAGACCCTGAAAACCGTCTATCCTGCTTTTTTGCACGGGCGCGATCTAC
AGGGAAACTGTATTTCTGTTGAAATACCCGGCTCGATGAACGTGAAACTT
ATGAAGTCGGCCAAGTTGAGCCCGCGAGACATGGCCCTGCACTTAGCGTT
GGTCCAGGAGTACGTCTGGACGGTGCTTACGCCGGGGGACGACAGAAAGA
TAGTGACCTTGATGGACGCGAAGGGTCTTTCCTTGACGCGGCTGGCGTCT
CCGGATAGCTTGGCGCTGATACGCGCGGCCTCTGAGACCCTAAATAATCA
TTATCCTGACCGAGTGCTCCGAATTCTTGTAGTCAATGCCCCTCGGTTTT
TTGGTCCGATTTTCAGGCTTCTGTCTACTGTAATGCCCGCGTCAGTACGA
GACCAATTCCAAATTTGCTCCTCACCAGCAGATGTCGAAAAATTTATTTC
CCCAGATGTCCTTCCCGTAGAGTATGGAGGCAAGAATTCACTTAAATTCG
GACAATCTGAGGAGGAGGTAAGTTTGCGGGCACTTGTGGACAGAAACAAC
GCGGAAGGTGGGGACAGGCAGATGGATAAATGAAGTTACTGACAGAGATG
CTATCTACTAGAGGACATGGAGATGAGGCACGTCCCATAAAGAAATACTT
TGTATTCCAAATGAAAGTCATTTCATTTTTTTTACCTTTTTCATAAAGGT
TTAATTTCCTCAGTAAGGTGTATTTTTCCATGGTGACCCCCTCGATAACA
GTGAAGAAACCACAGGCATGGCCATGTAGGGCGTCTACTCGGAACGTACC
GTACACAAAATCGTCATTGTCCTTCGAGGCATTCTTTCCATGATCCAGAT
TCAAAGATCGCCATGCTCCCAAGCTTCACAAATCACATTGAAAAACACGT
AC

protein sequence of rna6787

>rna6787-protein ID=rna6787-protein|Name=rna6787|organism=Nannochloropsis gaditana|type=polypeptide|length=379bp
MGWSKPSQASGGLFRRHRCPVLAILLCIYAIVVESFLIPTSSRATAVLRK
RTGAALNSQLVRKSTVQPREPLTTSGGSSPPATADPPHPPVVAHAVAAET
LLPPSYFQSLPWTRSITGDGPETLLYMPFLEAQMRHLEAQRGFVRQLPVP
ENVAYTRAAKKASQMGSFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRF
DTDAPILGIDLLLFAGHKMLAVVDFQPLSQEAAYKQRFINQLGPIKAKYP
ALNEAMSNRYYEDTRWFSEHMLFGRLKESSQVQSTLFPAFMEYLTVYSDT
VRRSRGCVPDAEVEERVVSRHRAYDEYQLVHDPAHGLFTGYFGAQFAHDM
LTFQFDMADPALLLQKKKPQQPSHQQSGQ

mRNA from alignment at CM002469.1:500466..502069+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6787 ID=rna6787|Name=rna6787|organism=Nannochloropsis gaditana|type=mRNA|length=1604bp|location=Sequence derived from alignment at CM002469.1:500466..502069+ (Nannochloropsis gaditana)
ATGGGGTGGTCCAAGCCTTCACAGGCAAGCGGAGGCCTCTTCCGGCGACA
TCGATGTCCCGTACTAGCTATCCTCCTATGTATTTATGCAATTGTTGTCG
AATCTTTTTTGATTCCGACGTCGTCCAGGGCGACTGCGGTCCTAAGAAAA
AGAACAGGGGCTGCATTAAATTCGCAGCTAGTCCGGAAATCAACGGTACG
TTGCATCTGCGGCGTAAAGGCTTTAGACGACCATGTGGTTTTTGGAGGTG
CACTATAGCACATTCCCTTATCGTGTTGCTGCGAAGTCATTTGTCACGAT
GTGCCGGGACAGCTTTTTAGAAGAATAAGAATCTTCCCCCCTGCGTGTCG
TGCGCCCACtagtctccttccttttccattgtCTCTATAAAATGTGACAC
CGTGACCGTATTTCGACTTCCGTCCCTAAAATATTACAGGTACAACCTCG
AGAGCCCCTGACTACCTCGGGCGGCAGCAGCCCGCCGGCTACCGCTgatc
ctccccatccccctgtCGTCGCGCACGCTGTTGCTGCGGagacccttctt
cctccctcctattTCCAAAGTCTGCCTTGGACCCGATCAATCACGGGCGA
TGGCCCGGAAACCCTGCTCTACATGCCTTTCTTAGAAGCGCAGATGCGGC
ATTTGGAGGCACAGAGGGGCTTCGTCCGTCAGCTTCCCGTTCCAGAGAAT
GTGGCGTACACTCGtgcggcgaagaaggcatCGCAGATGGGTAAGGAGAG
CTTTAATTATGGGACTGAGAATGGATGGACGGAGGTAGTTAGGGAGACAA
GGTGTGCTCCATGGTTCTTTGTAGCGTGGGGCGTACCTTATCTCTGTCGC
TTCGATCCATCCGAGCCTGGTACATCTTTTTTTATCCTCCTGCTAGatcc
gcaccctcctccctcacacaCTCCCCACGttttcatccttcccttcctcc
atccctacaGGAAGTTTCTGtgtggagacggaggactTTCGAAAGATCCG
CTTCACGTACATGGATGGTGGCAAGGGTCTACAGGTGTTCAATTCTGTGT
GGTACCCCCGTTTCGACACGGACGCCCCCATCCTCGGCATCGACCTGTTG
CTCTTCGCGGGGCACAAGATGCTGGCCGTGGTTGATTTCCAGCCGCTCTC
CCAGGAGGCGGCATACAAGCAACGCTTCATCAACCAGCTTGGCCCCATCA
AGGCGAAATACCCGGCTCTGAATGAGGCCATGAGCAACCGATACTACGAG
GACACGCGCTGGTTCTCAGAGCACATGCTCTTCGGGCGCTTGAAGGAGTC
GAGTCAAGTCCAGTCCACCCTGTTCCCGGCCTTCATGGAGTATCTCACCG
TTTATTCGGACACGGTCCGGCGCTCCCGCGGATGCGTGCCGGAtgcagag
gtggaggaacgAGTGGTGTCGAGACACCGTGCCTACGACGAGTACCAGCT
CGTTCACGAccccgcccacggcctcttcACCGGCTACTTCGGCGCGCAGT
TCGCCCATGACATGCTGACCTTTCAATTCGACATGGCGGACCCGGCTTTG
TTGTTGCAGAAAAAGAAGCCCCAGCAACCGTCCCATCAGCAGAGTGGTCA
GTGA

Coding sequence (CDS) from alignment at CM002469.1:500466..502069+

>rna6787 ID=rna6787|Name=rna6787|organism=Nannochloropsis gaditana|type=CDS|length=3420bp|location=Sequence derived from alignment at CM002469.1:500466..502069+ (Nannochloropsis gaditana)
ATGGGGTGGTCCAAGCCTTCACAGGCAAGCGGAGGCCTCTTCCGGCGACA
TCGATGTCCCGTACTAGCTATCCTCCTATGTATTTATGCAATTGTTGTCG
AATCTTTTTTGATTCCGACGTCGTCCAGGGCGACTGCGGTCCTAAGAAAA
AGAACAGGGGCTGCATTAAATTCGCAGCTAGTCCGGAAATCAACGGTACA
ACCTCGAGAGCCCCTGACTACCTCGGGCGGCAGCAGCCCGCCGGCTACCG
CTgatcctccccatccccctgtCGTCGCGCACGCTGTTGCTGCGGagacc
cttcttcctccctcctattTCCAAAGTCTGCCTTGGACCCGATCAATCAC
GGGCGATGGCCCGGAAACCCTGCTCTACATGCCTTTCTTAGAAGCGCAGA
TGCGGCATTTGGAGGCACAGAGGGGCTTCGTCCGTCAGCTTCCCGTTCCA
GAGAATGTGGCGTACACTCGtgcggcgaagaaggcatCGCAGATGGGAAG
TTTCTGtgtggagacggaggactTTCGAAAGATCCGCTTCACGTACATGG
ATGGTGGCAAGGGTCTACAGGTGTTCAATTCTGTGTGGTACCCCCGTTTC
GACACGGACGCCCCCATCCTCGGCATCGACCTGTTGCTCTTCGCGGGGCA
CAAGATGCTGGCCGTGGTTGATTTCCAGCCGCTCTCCCAGGAGGCGGCAT
ACAAGCAACGCTTCATCAACCAGCTTGGCCCCATCAAGGCGAAATACCCG
GCTCTGAATGAGGCCATGAGCAACCGATACTACGAGGACACGCGCTGGTT
CTCAGAGCACATGCTCTTCGGGCGCTTGAAGGAGTCGAGTCAAGTCCAGT
CCACCCTGTTCCCGGCCTTCATGGAGTATCTCACCGTTTATTCGGACACG
GTCCGGCGCTCCCGCGGATGCGTGCCGGAtgcagaggtggaggaacgAGT
GGTGTCGAGACACCGTGCCTACGACGAGTACCAGCTCGTTCACGAccccg
cccacggcctcttcACCGGCTACTTCGGCGCGCAGTTCGCCCATGACATG
CTGACCTTTCAATTCGACATGGCGGACCCGGCTTTGTTGTTGCAGAAAAA
GAAGCCCCAGCAACCGTCCCATCAGCAGAGTGGTCAGTGAATGGGGTGGT
CCAAGCCTTCACAGGCAAGCGGAGGCCTCTTCCGGCGACATCGATGTCCC
GTACTAGCTATCCTCCTATGTATTTATGCAATTGTTGTCGAATCTTTTTT
GATTCCGACGTCGTCCAGGGCGACTGCGGTCCTAAGAAAAAGAACAGGGG
CTGCATTAAATTCGCAGCTAGTCCGGAAATCAACGGTACAACCTCGAGAG
CCCCTGACTACCTCGGGCGGCAGCAGCCCGCCGGCTACCGCTgatcctcc
ccatccccctgtCGTCGCGCACGCTGTTGCTGCGGagacccttcttcctc
cctcctattTCCAAAGTCTGCCTTGGACCCGATCAATCACGGGCGATGGC
CCGGAAACCCTGCTCTACATGCCTTTCTTAGAAGCGCAGATGCGGCATTT
GGAGGCACAGAGGGGCTTCGTCCGTCAGCTTCCCGTTCCAGAGAATGTGG
CGTACACTCGtgcggcgaagaaggcatCGCAGATGGGAAGTTTCTGtgtg
gagacggaggactTTCGAAAGATCCGCTTCACGTACATGGATGGTGGCAA
GGGTCTACAGGTGTTCAATTCTGTGTGGTACCCCCGTTTCGACACGGACG
CCCCCATCCTCGGCATCGACCTGTTGCTCTTCGCGGGGCACAAGATGCTG
GCCGTGGTTGATTTCCAGCCGCTCTCCCAGGAGGCGGCATACAAGCAACG
CTTCATCAACCAGCTTGGCCCCATCAAGGCGAAATACCCGGCTCTGAATG
AGGCCATGAGCAACCGATACTACGAGGACACGCGCTGGTTCTCAGAGCAC
ATGCTCTTCGGGCGCTTGAAGGAGTCGAGTCAAGTCCAGTCCACCCTGTT
CCCGGCCTTCATGGAGTATCTCACCGTTTATTCGGACACGGTCCGGCGCT
CCCGCGGATGCGTGCCGGAtgcagaggtggaggaacgAGTGGTGTCGAGA
CACCGTGCCTACGACGAGTACCAGCTCGTTCACGAccccgcccacggcct
cttcACCGGCTACTTCGGCGCGCAGTTCGCCCATGACATGCTGACCTTTC
AATTCGACATGGCGGACCCGGCTTTGTTGTTGCAGAAAAAGAAGCCCCAG
CAACCGTCCCATCAGCAGAGTGGTCAGTGAATGGGGTGGTCCAAGCCTTC
ACAGGCAAGCGGAGGCCTCTTCCGGCGACATCGATGTCCCGTACTAGCTA
TCCTCCTATGTATTTATGCAATTGTTGTCGAATCTTTTTTGATTCCGACG
TCGTCCAGGGCGACTGCGGTCCTAAGAAAAAGAACAGGGGCTGCATTAAA
TTCGCAGCTAGTCCGGAAATCAACGGTACAACCTCGAGAGCCCCTGACTA
CCTCGGGCGGCAGCAGCCCGCCGGCTACCGCTgatcctccccatccccct
gtCGTCGCGCACGCTGTTGCTGCGGagacccttcttcctccctcctattT
CCAAAGTCTGCCTTGGACCCGATCAATCACGGGCGATGGCCCGGAAACCC
TGCTCTACATGCCTTTCTTAGAAGCGCAGATGCGGCATTTGGAGGCACAG
AGGGGCTTCGTCCGTCAGCTTCCCGTTCCAGAGAATGTGGCGTACACTCG
tgcggcgaagaaggcatCGCAGATGGGAAGTTTCTGtgtggagacggagg
actTTCGAAAGATCCGCTTCACGTACATGGATGGTGGCAAGGGTCTACAG
GTGTTCAATTCTGTGTGGTACCCCCGTTTCGACACGGACGCCCCCATCCT
CGGCATCGACCTGTTGCTCTTCGCGGGGCACAAGATGCTGGCCGTGGTTG
ATTTCCAGCCGCTCTCCCAGGAGGCGGCATACAAGCAACGCTTCATCAAC
CAGCTTGGCCCCATCAAGGCGAAATACCCGGCTCTGAATGAGGCCATGAG
CAACCGATACTACGAGGACACGCGCTGGTTCTCAGAGCACATGCTCTTCG
GGCGCTTGAAGGAGTCGAGTCAAGTCCAGTCCACCCTGTTCCCGGCCTTC
ATGGAGTATCTCACCGTTTATTCGGACACGGTCCGGCGCTCCCGCGGATG
CGTGCCGGAtgcagaggtggaggaacgAGTGGTGTCGAGACACCGTGCCT
ACGACGAGTACCAGCTCGTTCACGAccccgcccacggcctcttcACCGGC
TACTTCGGCGCGCAGTTCGCCCATGACATGCTGACCTTTCAATTCGACAT
GGCGGACCCGGCTTTGTTGTTGCAGAAAAAGAAGCCCCAGCAACCGTCCC
ATCAGCAGAGTGGTCAGTGA

Synonyms

Publications