EWM23912.1, cds6771 (CDS) Nannochloropsis gaditana

Overview
NameEWM23912.1
Unique Namecds6771
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:500466..500660 +
Alignment locationCM002469.1:500905..501205 +
Alignment locationCM002469.1:501426..502069 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23912.1
Productferredoxin-dependent bilin reductase
Orig transcript idgnl|cribi|Naga_100113g16.9978.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:500466..500660 +
CM002469.1supercontigCM002469.1:500905..501205 +
CM002469.1supercontigCM002469.1:501426..502069 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0055114oxidation-reduction process
GO:0010024phytochromobilin biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0050897cobalt ion binding
GO:0016636oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR009249Ferredoxin-dep_bilin_Rdtase
Homology
BLAST of EWM23912.1 vs. NCBI_GenBank
Match: gi|585105194|gb|EWM23912.1| (ferredoxin-dependent bilin reductase [Nannochloropsis gaditana])

HSP 1 Score: 788.104 bits (2034), Expect = 0.000e+0
Identity = 379/379 (100.00%), Postives = 379/379 (100.00%), Query Frame = 0
Query:    1 MGWSKPSQASGGLFRRHRCPVLAILLCIYAIVVESFLIPTSSRATAVLRKRTGAALNSQLVRKSTVQPREPLTTSGGSSPPATADPPHPPVVAHAVAAETLLPPSYFQSLPWTRSITGDGPETLLYMPFLEAQMRHLEAQRGFVRQLPVPENVAYTRAAKKASQMGSFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFAGHKMLAVVDFQPLSQEAAYKQRFINQLGPIKAKYPALNEAMSNRYYEDTRWFSEHMLFGRLKESSQVQSTLFPAFMEYLTVYSDTVRRSRGCVPDAEVEERVVSRHRAYDEYQLVHDPAHGLFTGYFGAQFAHDMLTFQFDMADPALLLQKKKPQQPSHQQSGQ 379
            MGWSKPSQASGGLFRRHRCPVLAILLCIYAIVVESFLIPTSSRATAVLRKRTGAALNSQLVRKSTVQPREPLTTSGGSSPPATADPPHPPVVAHAVAAETLLPPSYFQSLPWTRSITGDGPETLLYMPFLEAQMRHLEAQRGFVRQLPVPENVAYTRAAKKASQMGSFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFAGHKMLAVVDFQPLSQEAAYKQRFINQLGPIKAKYPALNEAMSNRYYEDTRWFSEHMLFGRLKESSQVQSTLFPAFMEYLTVYSDTVRRSRGCVPDAEVEERVVSRHRAYDEYQLVHDPAHGLFTGYFGAQFAHDMLTFQFDMADPALLLQKKKPQQPSHQQSGQ
Sbjct:    1 MGWSKPSQASGGLFRRHRCPVLAILLCIYAIVVESFLIPTSSRATAVLRKRTGAALNSQLVRKSTVQPREPLTTSGGSSPPATADPPHPPVVAHAVAAETLLPPSYFQSLPWTRSITGDGPETLLYMPFLEAQMRHLEAQRGFVRQLPVPENVAYTRAAKKASQMGSFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFAGHKMLAVVDFQPLSQEAAYKQRFINQLGPIKAKYPALNEAMSNRYYEDTRWFSEHMLFGRLKESSQVQSTLFPAFMEYLTVYSDTVRRSRGCVPDAEVEERVVSRHRAYDEYQLVHDPAHGLFTGYFGAQFAHDMLTFQFDMADPALLLQKKKPQQPSHQQSGQ 379          
BLAST of EWM23912.1 vs. NCBI_GenBank
Match: gi|546302508|ref|XP_005711717.1| (unnamed protein product [Chondrus crispus] >gi|507108047|emb|CDF41423.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 197.978 bits (502), Expect = 7.236e-57
Identity = 103/271 (38.01%), Postives = 163/271 (60.15%), Query Frame = 0
Query:  109 SLPWTRSITGDGPETLLYMPFLEAQMRHLEAQRGFVRQLPVPENVAYTRAAKKASQMGSFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFAGHKMLAVVDFQPLSQEAAYKQRFINQLGPIKAKYPALNEAMSNRYYEDTRWFSEHMLFGRLKESSQVQSTLFPAFMEYLTVYSDTVRRSRGCVPDAEVEE--RVVSRHRAYDEYQLVHDPAHGLFTGYFGAQFAHDMLTFQFDMADPALLLQKKKPQQPSHQQS 377
            +LPWT SI  D  + LL+MPF+  Q+  + ++   V  LP  E+++Y ++ K+ +++ S+  +T++FRKIR TY+D G   QVFNSVWYP  + + P+LGID L F   K+L V+DFQPLSQ+  Y +++   + PIK KY  L  +MS R+Y++ ++FS+ ++F +   +  V + LFPAF EYLT Y   +   +   PD   E   RV    + YD+Y    DPA GLF+ Y+G ++A +  T +F  +D   + +++K  +     S
Sbjct:   59 ALPWTESIAKDDFK-LLFMPFVMHQLGEMRSKLEGVEDLPFEESLSYQQSEKRPARIESWQWKTKEFRKIRATYIDAGVNAQVFNSVWYPNTEYEHPLLGIDFLSFGKKKVLCVLDFQPLSQDEHYLKKYCEPVAPIKLKYEGLAGSMSARFYDEAQFFSKQLVFAKFDNAEPVMTQLFPAFQEYLTAY---ITMMKNATPDTSPESMARVAQLQKDYDQYSAERDPAVGLFSTYWGKEWA-EKFTHEFLFSDAVPVAKEEKEDKKQSNSS 324          
BLAST of EWM23912.1 vs. NCBI_GenBank
Match: gi|1210522273|dbj|GAX19035.1| (hypothetical protein FisN_8Hh258 [Fistulifera solaris])

HSP 1 Score: 189.889 bits (481), Expect = 2.664e-53
Identity = 109/293 (37.20%), Postives = 164/293 (55.97%), Query Frame = 0
Query:   88 HPPVVA--HAVAAETLLPPSYFQSLPWTRSITGDGPE--TLLYMPFLEAQMRHLEAQRGFVRQLPVPE---NVAYTRAAKKASQMGSFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFAGHKMLAVVDFQPLSQ-EAAYKQRFINQLGPIKAKYPALNEAMSNRYYEDTRWFSEHMLFGRLKESSQVQSTLFPAFMEYLTVYSDTVRRSRGCVPDAEVEERVVSRHRAYDEYQLVHDPAHGLFTGYFGAQFAHDML-TFQFDMADPALLLQKKKPQQ 371
            +PP ++  HA AA         Q +PW  SI    PE   LLYMPF E  M  ++     +R +P      + +Y    +K +++ S C  + ++RKIR TY D G+  QV+N+V+YP    + P+LGIDLL F   K LA+VDFQPL + E  +   F ++L PIK +Y  L   MS+++Y++T++FS+ MLF R ++ S + + LFPAF  Y+  + D +R       D ++   V+ R +AYD Y    DPA GLFT  FGA++A D +  F F M++     +   PQ+
Sbjct:   71 YPPSISISHAEAA---------QGMPWKSSIDPKYPEEEDLLYMPFWEWHMSFMKENLTNLRVMPCTNGKTDFSYNENIQKKARIVSLCASSSEYRKIRMTYYDAGENTQVYNAVFYPDPKYNLPVLGIDLLAFNRKKYLAIVDFQPLHENEEDHATTFEHRLQPIKEQYENLKGRMSSKFYDETQFFSQQMLFSRFEDESIISNELFPAFQSYVQTHLDLIREVDPVEADLDM---VLKRQKAYDTYSAERDPATGLFTAMFGAEWAMDFVHDFLFSMSERPTTTRSSLPQR 351          
BLAST of EWM23912.1 vs. NCBI_GenBank
Match: gi|641739670|gb|AIA66935.1| (putative 15,16-DHBV:ferredoxin-dependent bilin reductase, partial [synthetic construct])

HSP 1 Score: 179.489 bits (454), Expect = 1.268e-50
Identity = 94/209 (44.98%), Postives = 129/209 (61.72%), Query Frame = 0
Query:  167 SFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFAGHKMLAVVDFQPLSQEAAYKQRFINQLGPIKAKYPALNEAMSNRYYEDTRWFSEHMLFGRLKESSQVQSTLFPAFMEYLTVYSDTVRRSRGCVPD--AEVEERVVSRHRAYDEYQLVHDPAHGLFTGYFGAQFAHDM-LTFQFDMADPALLLQKKKPQQP 372
            S+  ET++FRKIR TY+D G+  QVFNSVWYPR   DAP+ GID L F   K+LA++D QPL+Q+ AY + +I+ L P++ KY  L   MS+++Y++TR+FS+ +LFGR      V S+LFPAF EY+  Y   V+  RG  PD   +    V    R YD+Y    DPA GLF+ Y+G ++A D    F F  A P     + KP +P
Sbjct:   57 SWQYETKEFRKIRLTYIDAGQNAQVFNSVWYPRHSYDAPVFGIDFLAFGKKKVLAILDLQPLTQDPAYLENYIDPLIPLRNKYEDLCGRMSSKFYDETRFFSKQLLFGRFDNDEPVMSSLFPAFQEYMEYY---VKMIRGLTPDDSKDFTSHVAELQRQYDQYSAEKDPAVGLFSTYWGEEWAEDFTYNFLFSEAVP-----QPKPAEP 257          
BLAST of EWM23912.1 vs. NCBI_GenBank
Match: gi|551645021|ref|XP_005825300.1| (ferredoxin blin reductase plastid precursor [Guillardia theta CCMP2712] >gi|428169386|gb|EKX38320.1| ferredoxin blin reductase plastid precursor [Guillardia theta CCMP2712] >gi|641739672|gb|AIA66936.1| 15,16-DHBV:ferredoxin dependent bilin reductase [synthetic construct])

HSP 1 Score: 180.259 bits (456), Expect = 1.296e-50
Identity = 94/209 (44.98%), Postives = 129/209 (61.72%), Query Frame = 0
Query:  167 SFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFAGHKMLAVVDFQPLSQEAAYKQRFINQLGPIKAKYPALNEAMSNRYYEDTRWFSEHMLFGRLKESSQVQSTLFPAFMEYLTVYSDTVRRSRGCVPD--AEVEERVVSRHRAYDEYQLVHDPAHGLFTGYFGAQFAHDM-LTFQFDMADPALLLQKKKPQQP 372
            S+  ET++FRKIR TY+D G+  QVFNSVWYPR   DAP+ GID L F   K+LA++D QPL+Q+ AY + +I+ L P++ KY  L   MS+++Y++TR+FS+ +LFGR      V S+LFPAF EY+  Y   V+  RG  PD   +    V    R YD+Y    DPA GLF+ Y+G ++A D    F F  A P     + KP +P
Sbjct:   79 SWQYETKEFRKIRLTYIDAGQNAQVFNSVWYPRHSYDAPVFGIDFLAFGKKKVLAILDLQPLTQDPAYLENYIDPLIPLRNKYEDLCGRMSSKFYDETRFFSKQLLFGRFDNDEPVMSSLFPAFQEYMEYY---VKMIRGLTPDDSKDFTSHVAELQRQYDQYSAEKDPAVGLFSTYWGEEWAEDFTYNFLFSEAVP-----QPKPAEP 279          
BLAST of EWM23912.1 vs. NCBI_GenBank
Match: gi|545701971|ref|XP_005703317.1| (15,16-dihydrobiliverdin:ferredoxin oxidoreductase [Galdieria sulphuraria] >gi|452819744|gb|EME26797.1| 15,16-dihydrobiliverdin:ferredoxin oxidoreductase [Galdieria sulphuraria])

HSP 1 Score: 179.489 bits (454), Expect = 5.398e-50
Identity = 94/238 (39.50%), Postives = 135/238 (56.72%), Query Frame = 0
Query:  112 WTRSITG-DGPETLLYMPFLEAQMRHLEAQRGFVRQLPVPENVAYTRAAKKASQMGSFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFAGHKMLAVVDFQPLSQEAAYKQRFINQLGPIKAKYPALNEAMSNRYYEDTRWFSEHMLFGRLKESSQVQSTLFPAFMEYLTVYSDTVRRSRGCVPDAEVEERVVSRHRAYDEYQLVHDPAHGLFTGYFGAQFAH 348
            W  S+ G D P  ++Y PFLE     L A    V   P+ E +A  +++KK +++ S+C +   FRKIR TY+D G   QVFN+VWYP    + PILG+D L F G  +L V+DFQPL  +  Y  ++I  L PI+ +Y  L   MS+R+Y++ R+FS+ +LFGR   +  +   LFPAF EYL +Y   +  ++  V D +    +      YD Y    DPA  LF  YFG+ +AH
Sbjct:   59 WKTSVAGSDIP--MIYSPFLEDMQNTLFASFETVEDYPLSEFLASAQSSKKPARIESWCYQCPKFRKIRLTYLDAGVAAQVFNAVWYPISSLELPILGVDFLSFGGKNVLCVMDFQPLMNDQYYLDKYIQPLHPIRERYADLAGRMSSRFYDENRFFSKELLFGRFDSTKPIYERLFPAFREYLDLY---ITLAKQTVEDDKSRSIIWQLQCEYDRYSAEKDPAMSLFRSYFGSTWAH 291          
BLAST of EWM23912.1 vs. NCBI_GenBank
Match: gi|1189386308|gb|OSX73424.1| (hypothetical protein BU14_0348s0001 [Porphyra umbilicalis])

HSP 1 Score: 178.333 bits (451), Expect = 6.055e-50
Identity = 94/235 (40.00%), Postives = 141/235 (60.00%), Query Frame = 0
Query:  127 MPFLEAQMRHLEAQRGFVRQLPVPENVAYTRAAKKASQMGSFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFAGHKMLAVVDFQPLSQEAAYKQRFINQLGPIKAKYPALNEAMSNRYYEDTRWFSEHMLFGRLKESSQVQSTLFPAFMEYLTVYSDTVRRSRGCVPDAEVEERVVSR--HRAYDEYQLVHDPAHGLFTGYFGAQFAHDMLTFQFDMAD 359
            M F+   M  + ++   V  LP  E+++     K+ +++ S+  + + FRKIR TY+D G   QVFNSVWYP    D P+LGID L F   ++L ++DFQPLSQE AY +++I  L PIKAKYP L   MS+R+Y++ R+FS+ + FG+  ++  V + L+PAF+EYL  Y   VR  +   P+ +  +   +R     YD+Y    DPA GLF+ YFG  +A +  T +F  +D
Sbjct:    1 MDFIVHMMGVMRSELTGVADLPFEESLSLQTGKKRPARIESWNYQADGFRKIRSTYIDAGLPAQVFNSVWYPDPAYDLPLLGIDFLSFGKKRVLCILDFQPLSQEPAYLEKYIAPLAPIKAKYPGLAGKMSSRFYDENRFFSQELAFGKFDDAGPVATELYPAFVEYLAEY---VRAFKAATPETDPAKIAATRAAQAEYDQYSAERDPAVGLFSTYFGPDWA-EAFTHEFLFSD 231          
BLAST of EWM23912.1 vs. NCBI_GenBank
Match: gi|1210525836|dbj|GAX15442.1| (hypothetical protein FisN_8Lh258 [Fistulifera solaris])

HSP 1 Score: 179.489 bits (454), Expect = 2.328e-49
Identity = 100/270 (37.04%), Postives = 153/270 (56.67%), Query Frame = 0
Query:  108 QSLPWTRSITGDGPE-TLLYMPFLEAQMRHLEAQRGFVRQLPVPE---NVAYTRAAKKASQMGSFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFAGHKMLAVVDFQPLSQ-EAAYKQRFINQLGPIKAKYPALNEAMSNRYYEDTRWFSEHMLFGRLKESSQVQSTLFPAFMEYLTVYSDTVRRSRGCVPDAEVEERVVSRHRAYDEYQLVHDPAHGLFTGYFGAQFAHDML-TFQFDMADPALLLQKKKPQQ 371
            Q +PW  SI    PE  LLYMPF E  M  ++     +R +P      + +Y    +K +++ S    + ++RKIR TY D G+  QV+N+V+YP    + P+LGIDLL F   K LA+VDFQPL + E  +   + ++L PIK  Y  L   MS+++Y++T++FS+ MLF R ++ + + + LFPAF  Y+  + D +R       D ++   V+ R +AYD Y    DPA GLFT  FG ++A D +  F F M++      + +PQQ
Sbjct:   83 QGMPWKSSIDPKYPEEDLLYMPFWEWHMSFMKENLTNLRVMPCTNGKTDFSYNENTQKKARIVSLSASSSEYRKIRMTYYDAGENTQVYNAVFYPDPKYNLPVLGIDLLAFNRKKYLAIVDFQPLHENEEDHATTYEHRLQPIKELYENLKGRMSSKFYDETQFFSQQMLFSRFEDETIISNELFPAFQSYVQTHLDLIREVDPVEADIDM---VLKRQKAYDTYSAERDPATGLFTAMFGEEWAMDFVHDFLFSMSERP--TTRSRPQQ 347          
BLAST of EWM23912.1 vs. NCBI_GenBank
Match: gi|299115646|emb|CBN75847.1| (conserved unknown protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 174.096 bits (440), Expect = 2.137e-48
Identity = 89/185 (48.11%), Postives = 120/185 (64.86%), Query Frame = 0
Query:  176 RKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFAGHKMLAVVDFQPLSQEAAYKQRFINQLGPIKAKYPALNEAMSNRYYEDTRWFSEHMLFGRLKESSQVQSTLFPAFMEYLTVY-SDTVRRS-RGCVPDAEVEERVVSRHRAYDEYQLVHDPAHGLFTGYFGAQFAHD-MLTFQFDM 357
            RK+R TY D G  +QV N+V YP    D P+LGIDL+ F G K LA +DFQPL  + + + R+ ++L PIKAKYP   + MS R+Y+  R+FSE MLFGR ++ + V   LFPAF EYL++Y SD ++ +  G  P  E   RV+ RHRAYD+Y    DPAHGLF  YFG  ++ + M  F F++
Sbjct:   51 RKVRLTYFDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFGG-KHLAGIDFQPLFDDDSCRNRYSDKLAPIKAKYPEFAQKMSPRFYDSARFFSEEMLFGRYEDEAIVDEKLFPAFEEYLSLYISDLLKAAEEGGNPSPEARARVLDRHRAYDQYNAERDPAHGLFRTYFGEAYSENFMDNFLFEL 234          
BLAST of EWM23912.1 vs. NCBI_GenBank
Match: gi|397620701|gb|EJK65856.1| (hypothetical protein THAOC_13245, partial [Thalassiosira oceanica])

HSP 1 Score: 179.874 bits (455), Expect = 2.161e-47
Identity = 98/257 (38.13%), Postives = 148/257 (57.59%), Query Frame = 0
Query:  110 LPWTRSIT-GDGPETLLYMPFLEAQMRHLEAQRGFVRQLPVPE----NVAYTRAAKKASQMGSFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFAGHKMLAVVDFQPLSQ-EAAYKQRFINQLGPIKAKYPALNEAMSNRYYEDTRWFSEHMLFGRLKESSQVQSTLFPAFMEYLTVYSDTVRRSRGCVPDAEVEERVVSRHRAYDEYQLVHDPAHGLFTGYFGAQFAHDML-TFQFDMAD 359
            +PW  +I   D  + LLYMPF E Q+  +E+    +  +        +V+     +K +++ + C  ++++RKIR TY D G  +QVFNSVWYP    + P+LGIDLL F   K LA+VDFQPL + E  +   + + L P+K +Y  L   MS+++Y++T++FS+ MLF R ++ + V   LFPAF +Y+  ++D VRR+       EVE     R RAYD Y    DPA GLF   FG  +A D +  F F +++
Sbjct:  300 MPWRDTIGRTDEADPLLYMPFWEWQLDFMESSLTNLHPISCDTETGVDVSLNVNPEKRARIVNNCYASDEYRKIRMTYYDAGDSVQVFNSVWYPDAKYNLPVLGIDLLSFNRKKYLAIVDFQPLHESEDDHAATYEHILRPVKEQYENLKGRMSSKFYDETKFFSKEMLFARFEDGAVVGRDLFPAFQKYVETHADLVRRTPAATTAEEVEA-TFQRQRAYDTYSASRDPAAGLFAAMFGKTWAEDFIYDFLFSLSE 555          
The following BLAST results are available for this feature:
BLAST of EWM23912.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105194|gb|EWM23912.1|0.000e+0100.00ferredoxin-dependent bilin reductase [Nannochlorop... [more]
gi|546302508|ref|XP_005711717.1|7.236e-5738.01unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|1210522273|dbj|GAX19035.1|2.664e-5337.20hypothetical protein FisN_8Hh258 [Fistulifera sola... [more]
gi|641739670|gb|AIA66935.1|1.268e-5044.98putative 15,16-DHBV:ferredoxin-dependent bilin red... [more]
gi|551645021|ref|XP_005825300.1|1.296e-5044.98ferredoxin blin reductase plastid precursor [Guill... [more]
gi|545701971|ref|XP_005703317.1|5.398e-5039.5015,16-dihydrobiliverdin:ferredoxin oxidoreductase ... [more]
gi|1189386308|gb|OSX73424.1|6.055e-5040.00hypothetical protein BU14_0348s0001 [Porphyra umbi... [more]
gi|1210525836|dbj|GAX15442.1|2.328e-4937.04hypothetical protein FisN_8Lh258 [Fistulifera sola... [more]
gi|299115646|emb|CBN75847.1|2.137e-4848.11conserved unknown protein (Partial), partial [Ecto... [more]
gi|397620701|gb|EJK65856.1|2.161e-4738.13hypothetical protein THAOC_13245, partial [Thalass... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6787rna6787Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications