rna6785, rna6785 (mRNA) Nannochloropsis gaditana

Overview
Namerna6785
Unique Namerna6785
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length789
Alignment locationCM002469.1:495898..496957 -

Link to JBrowse

Properties
Property NameValue
Productcold inducible rna binding protein
Orig transcript idgnl|cribi|Naga_100113g13.9969.mrna
Orig protein idgnl|cribi|Naga_100113g13.9969
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:495898..496957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100113g13gene6559Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6785rna6785-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23903.1cds6769Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6785 ID=rna6785|Name=rna6785|organism=Nannochloropsis gaditana|type=mRNA|length=789bp
ATGCTCAACGAGAACCCGTGGGGAGGGTTGTCAAGCAAACTACTGGATCA
AAGTAAACAGGGTGCTTCAAGCTTTCAACAATCAAGTAAAGAAATCCGAA
AAACTTGGATGTTTGGAAGCAAGACAGCGCAGAAGTGGAGCTCCCGTTCT
CCTCACTTCCTCTTTCGCGGCTTGATTGCAATGTCTTTAATAATCACACC
CGAATTTCAACATATCCTTCGTATCCTGAACACGAACGTGGACGGGACCC
GATCAGTGCAGTATGCCCTGACCTCCATTAAAGGCGTTGGACGGCGATTT
GCCAACGTTGTGTGCAAGAAAGCCGAAATCGACCTGAATCAGCGGGCGGG
AGAGTTGACACAGGAGAAGCTGGAGGAAGTGATTGCAATTGTCTCAAATC
CCAAGGCATTCAAGATTCCGGATTGGTTTCTGAACAGGCAGCGAGACTGG
AAAACGAATAAGCCCTCGCAAGCAACGTCGAACGTGGTAGACACGAAGCT
GCGCGAAGATCTGGAGCGATTGAAGAAAATCCGATCACACCGTGGTATTC
GCCACTACTGGGGTGTGCGCGTGCGTGGACAGCATACAAAAACCACAGGC
CGCCGGGGGAAGACCGTGGGTCCTGCAGGAAAGAAATTACTAGAAGCCCT
CACACTGTCTGATCGCGATTCTAGTCTCTTTCTAAAAAGCTCCAAAGCGG
ATGAGGAGCGAGGAGAGGAGAAAGAGCTACTGTCGCTTAAATCAGTGATC
TGTCGAATTATGAAGGAAACAATCGCCACTTTCCAGTAG
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protein sequence of rna6785

>rna6785-protein ID=rna6785-protein|Name=rna6785|organism=Nannochloropsis gaditana|type=polypeptide|length=256bp
MLLTGVRRARVNGNRLLGWAESRISHAPRSVIDTSLTAFAFGSHRHISTK
LFIRIVPHSTTPESLHEFLRSYGPIREVKIVPPTRDDRPPFAFVEFDNLK
SALAAMEEMEFRRLEGRLIFPTFHVDHGRSGNLQGANRSGKEHRNQGRGL
SSRTRLRGDGVNISVTGRHGRDKSLSEQQERQAEGGPNVQISGHDGEEQG
VSGKVESSAAAEEDLGLRTDSLDGTAAGSHDSVGQSISESGFKREDVSYV
ETTTRA
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mRNA from alignment at CM002469.1:495898..496957-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6785 ID=rna6785|Name=rna6785|organism=Nannochloropsis gaditana|type=mRNA|length=1060bp|location=Sequence derived from alignment at CM002469.1:495898..496957- (Nannochloropsis gaditana)
ATGTTGCTGACTGGTGTGCGGAGGGCCCGGGTAAATGGCAACCGGCTGCT
CGGATGGGCGGAATCGCGAATCTCTCACGCCCCTCGCTCCGTCATCGACA
CTAGCCTGACGGCATTCGCATTCGGGAGCCACAGGCACATTTCGACAAAG
CTCTTTATTCGCAGTAAGTGGAAACGCCTTGTATAGGCGGATATATGGCC
TTTTGATCCCGTCAGTCGGAAACTGCGCGGATTACCTTGGTATCACAAAC
TTCATACATATACTACAGTCGTCCCGCATTCAACAACGCCTGAGTCCCTC
CACGAGTTTCTGCGCTCGTATGGTCCTATCCGCGAAGGTACGTCCCATAC
AACAGTTTGAATTCGTATGGTTTATTACATATCATCAAGCCCGCCGCGCT
GATCCCGAGATACGTATTTCTTAAAAAGTCAAGATTGTCCCCCCGACTCG
TGACGACCGCCCTCCCTTCGCTTTCGTGGAGTTTGATAACCTTAAATCGG
CGCTTGCTGCCATGGAAGAAATGGAATTTCGGGTACGTGAAGGGATACAG
GGAGCGGGTGAGTGGCGTCGACCTAGGACTGAGAAGGTGCGACGTGCTCA
CATGTGTCTCATGGCGGGGCGACAGCGCCTGGAGGGCCGGCTCATTTTCC
CGACCTTCCACGTGGATCATGGGAGAAGCGGGAATCTCCAAGGCGCGAAC
AGATCTGGGAAGGAGCACCGAAATCAAGGGAGGGGATTATCATCACGCAC
GCGTTTGCGTGGAGACGGAGTAAACATTTCTGTGACCGGGCGTCACGGCC
GGGACAAGAGTTTGTCCGAGCAGCAAGAGCGACAGGCAGAGGGTGGGCCG
AACGTGCAGATATCAGGGCATGACGGGGAGGAGCAGGGCGTCTCTGGGAA
AGTCGAGTCATCCGCAGCGGCGGAGGAAGACCTTGGCTTGCGGACTGACA
GCTTGGACGGCACGGCCGCGGGGAGCCATGATAGTGTCGGGCAGTCGATA
AGCGAGAGTGGATTTAAGAGGGAGGATGTATCGTACGTTGAAACGACGAC
AAGAGCTTGA
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Coding sequence (CDS) from alignment at CM002469.1:495898..496957-

>rna6785 ID=rna6785|Name=rna6785|organism=Nannochloropsis gaditana|type=CDS|length=3084bp|location=Sequence derived from alignment at CM002469.1:495898..496957- (Nannochloropsis gaditana)
CGCCTGGAGGGCCGGCTCATTTTCCCGACCTTCCACGTGGATCATGGGAG
AAGCGGGAATCTCCAAGGCGCGAACAGATCTGGGAAGGAGCACCGAAATC
AAGGGAGGGGATTATCATCACGCACGCGTTTGCGTGGAGACGGAGTAAAC
ATTTCTGTGACCGGGCGTCACGGCCGGGACAAGAGTTTGTCCGAGCAGCA
AGAGCGACAGGCAGAGGGTGGGCCGAACGTGCAGATATCAGGGCATGACG
GGGAGGAGCAGGGCGTCTCTGGGAAAGTCGAGTCATCCGCAGCGGCGGAG
GAAGACCTTGGCTTGCGGACTGACAGCTTGGACGGCACGGCCGCGGGGAG
CCATGATAGTGTCGGGCAGTCGATAAGCGAGAGTGGATTTAAGAGGGAGG
ATGTATCGTACGTTGAAACGACGACAAGAGCTTGATCAAGATTGTCCCCC
CGACTCGTGACGACCGCCCTCCCTTCGCTTTCGTGGAGTTTGATAACCTT
AAATCGGCGCTTGCTGCCATGGAAGAAATGGAATTTCGGTCGTCCCGCAT
TCAACAACGCCTGAGTCCCTCCACGAGTTTCTGCGCTCGTATGGTCCTAT
CCGCGAAGATGTTGCTGACTGGTGTGCGGAGGGCCCGGGTAAATGGCAAC
CGGCTGCTCGGATGGGCGGAATCGCGAATCTCTCACGCCCCTCGCTCCGT
CATCGACACTAGCCTGACGGCATTCGCATTCGGGAGCCACAGGCACATTT
CGACAAAGCTCTTTATTCGCACGCCTGGAGGGCCGGCTCATTTTCCCGAC
CTTCCACGTGGATCATGGGAGAAGCGGGAATCTCCAAGGCGCGAACAGAT
CTGGGAAGGAGCACCGAAATCAAGGGAGGGGATTATCATCACGCACGCGT
TTGCGTGGAGACGGAGTAAACATTTCTGTGACCGGGCGTCACGGCCGGGA
CAAGAGTTTGTCCGAGCAGCAAGAGCGACAGGCAGAGGGTGGGCCGAACG
TGCAGATATCAGGGCATGACGGGGAGGAGCAGGGCGTCTCTGGGAAAGTC
GAGTCATCCGCAGCGGCGGAGGAAGACCTTGGCTTGCGGACTGACAGCTT
GGACGGCACGGCCGCGGGGAGCCATGATAGTGTCGGGCAGTCGATAAGCG
AGAGTGGATTTAAGAGGGAGGATGTATCGTACGTTGAAACGACGACAAGA
GCTTGATCAAGATTGTCCCCCCGACTCGTGACGACCGCCCTCCCTTCGCT
TTCGTGGAGTTTGATAACCTTAAATCGGCGCTTGCTGCCATGGAAGAAAT
GGAATTTCGGTCGTCCCGCATTCAACAACGCCTGAGTCCCTCCACGAGTT
TCTGCGCTCGTATGGTCCTATCCGCGAAGATGTTGCTGACTGGTGTGCGG
AGGGCCCGGGTAAATGGCAACCGGCTGCTCGGATGGGCGGAATCGCGAAT
CTCTCACGCCCCTCGCTCCGTCATCGACACTAGCCTGACGGCATTCGCAT
TCGGGAGCCACAGGCACATTTCGACAAAGCTCTTTATTCGCACGCCTGGA
GGGCCGGCTCATTTTCCCGACCTTCCACGTGGATCATGGGAGAAGCGGGA
ATCTCCAAGGCGCGAACAGATCTGGGAAGGAGCACCGAAATCAAGGGAGG
GGATTATCATCACGCACGCGTTTGCGTGGAGACGGAGTAAACATTTCTGT
GACCGGGCGTCACGGCCGGGACAAGAGTTTGTCCGAGCAGCAAGAGCGAC
AGGCAGAGGGTGGGCCGAACGTGCAGATATCAGGGCATGACGGGGAGGAG
CAGGGCGTCTCTGGGAAAGTCGAGTCATCCGCAGCGGCGGAGGAAGACCT
TGGCTTGCGGACTGACAGCTTGGACGGCACGGCCGCGGGGAGCCATGATA
GTGTCGGGCAGTCGATAAGCGAGAGTGGATTTAAGAGGGAGGATGTATCG
TACGTTGAAACGACGACAAGAGCTTGATCAAGATTGTCCCCCCGACTCGT
GACGACCGCCCTCCCTTCGCTTTCGTGGAGTTTGATAACCTTAAATCGGC
GCTTGCTGCCATGGAAGAAATGGAATTTCGGTCGTCCCGCATTCAACAAC
GCCTGAGTCCCTCCACGAGTTTCTGCGCTCGTATGGTCCTATCCGCGAAG
ATGTTGCTGACTGGTGTGCGGAGGGCCCGGGTAAATGGCAACCGGCTGCT
CGGATGGGCGGAATCGCGAATCTCTCACGCCCCTCGCTCCGTCATCGACA
CTAGCCTGACGGCATTCGCATTCGGGAGCCACAGGCACATTTCGACAAAG
CTCTTTATTCGCACGCCTGGAGGGCCGGCTCATTTTCCCGACCTTCCACG
TGGATCATGGGAGAAGCGGGAATCTCCAAGGCGCGAACAGATCTGGGAAG
GAGCACCGAAATCAAGGGAGGGGATTATCATCACGCACGCGTTTGCGTGG
AGACGGAGTAAACATTTCTGTGACCGGGCGTCACGGCCGGGACAAGAGTT
TGTCCGAGCAGCAAGAGCGACAGGCAGAGGGTGGGCCGAACGTGCAGATA
TCAGGGCATGACGGGGAGGAGCAGGGCGTCTCTGGGAAAGTCGAGTCATC
CGCAGCGGCGGAGGAAGACCTTGGCTTGCGGACTGACAGCTTGGACGGCA
CGGCCGCGGGGAGCCATGATAGTGTCGGGCAGTCGATAAGCGAGAGTGGA
TTTAAGAGGGAGGATGTATCGTACGTTGAAACGACGACAAGAGCTTGATC
AAGATTGTCCCCCCGACTCGTGACGACCGCCCTCCCTTCGCTTTCGTGGA
GTTTGATAACCTTAAATCGGCGCTTGCTGCCATGGAAGAAATGGAATTTC
GGTCGTCCCGCATTCAACAACGCCTGAGTCCCTCCACGAGTTTCTGCGCT
CGTATGGTCCTATCCGCGAAGATGTTGCTGACTGGTGTGCGGAGGGCCCG
GGTAAATGGCAACCGGCTGCTCGGATGGGCGGAATCGCGAATCTCTCACG
CCCCTCGCTCCGTCATCGACACTAGCCTGACGGCATTCGCATTCGGGAGC
CACAGGCACATTTCGACAAAGCTCTTTATTCGCA
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Synonyms
Publications