EWM23903.1, cds6769 (CDS) Nannochloropsis gaditana

Overview
NameEWM23903.1
Unique Namecds6769
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:496795..496957 -
Alignment locationCM002469.1:496621..496689 -
Alignment locationCM002469.1:496426..496529 -
Alignment locationCM002469.1:495898..496332 -

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Properties
Property NameValue
Protein idEWM23903.1
Productcold inducible rna binding protein
Orig transcript idgnl|cribi|Naga_100113g13.9969.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:496795..496957 -
CM002469.1supercontigCM002469.1:496621..496689 -
CM002469.1supercontigCM002469.1:496426..496529 -
CM002469.1supercontigCM002469.1:495898..496332 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
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BLAST of EWM23903.1 vs. NCBI_GenBank
Match: gi|585105185|gb|EWM23903.1| (cold inducible rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 516.538 bits (1329), Expect = 0.000e+0
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0 
Query:    1 MLLTGVRRARVNGNRLLGWAESRISHAPRSVIDTSLTAFAFGSHRHISTKLFIRIVPHSTTPESLHEFLRSYGPIREVKIVPPTRDDRPPFAFVEFDNLKSALAAMEEMEFRRLEGRLIFPTFHVDHGRSGNLQGANRSGKEHRNQGRGLSSRTRLRGDGVNISVTGRHGRDKSLSEQQERQAEGGPNVQISGHDGEEQGVSGKVESSAAAEEDLGLRTDSLDGTAAGSHDSVGQSISESGFKREDVSYVETTTRA 256
            MLLTGVRRARVNGNRLLGWAESRISHAPRSVIDTSLTAFAFGSHRHISTKLFIRIVPHSTTPESLHEFLRSYGPIREVKIVPPTRDDRPPFAFVEFDNLKSALAAMEEMEFRRLEGRLIFPTFHVDHGRSGNLQGANRSGKEHRNQGRGLSSRTRLRGDGVNISVTGRHGRDKSLSEQQERQAEGGPNVQISGHDGEEQGVSGKVESSAAAEEDLGLRTDSLDGTAAGSHDSVGQSISESGFKREDVSYVETTTRA
Sbjct:    1 MLLTGVRRARVNGNRLLGWAESRISHAPRSVIDTSLTAFAFGSHRHISTKLFIRIVPHSTTPESLHEFLRSYGPIREVKIVPPTRDDRPPFAFVEFDNLKSALAAMEEMEFRRLEGRLIFPTFHVDHGRSGNLQGANRSGKEHRNQGRGLSSRTRLRGDGVNISVTGRHGRDKSLSEQQERQAEGGPNVQISGHDGEEQGVSGKVESSAAAEEDLGLRTDSLDGTAAGSHDSVGQSISESGFKREDVSYVETTTRA 256
The following BLAST results are available for this feature:
BLAST of EWM23903.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105185|gb|EWM23903.1|0.000e+0100.00cold inducible rna binding protein [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6785rna6785Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications