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Properties
| Property Name | Value |
|---|
| Product | 40s ribosomal protein s18 |
| Orig transcript id | gnl|cribi|Naga_100113g12.9963.mrna |
| Orig protein id | gnl|cribi|Naga_100113g12.9963 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:493696..495868 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6784 ID=rna6784|Name=rna6784|organism=Nannochloropsis gaditana|type=mRNA|length=1758bp
ATGTCTCATCACGCGTCCAAATTCCCGCATCCGGCCAACACTACGGAGCA
AATGTCTGATAACATCAGAAGGAAAAAGTTTTTTTTCTTGCCCATCAGAA
GGCATTTGCGTCGCCGCCATCCGCAGTCAGGGCATGTTACAGACATAGCC
TCGCGCAATACTGATGCATCTATATCCTCCCAGTACTCTCCACATCACCG
CATCGGCAAGCATAATCCCGAGGAACGGAGATGTAGGCAACAACGTCCAA
TCACCTCGTCTAGCCCTCCGCAGTCCTCAAGGAAGGAGGCCGACAGGAGT
CCTCTTCGTCACGGCGTCCTCATTCCGGTTGAACCCCTCAATCTGGCTGC
CTCTCTCGAGGAAGTCCTGCGCTGCTATGCGGTCGATCGCCTTATGGCGA
GCGCGGCATTGTTAAGTGCACTTGAGCAGCGCATAGGCATTGCCCTAAAG
AGTGACGACGCGTTGGTCCGTGAGCCAGCCAAGGTGGTAAGAGGGTGCAT
GCAGAAACCGGAGATGGCCAAGCGCTTGGAGGTGATCCGCCTGAGGGGTT
CGCAATGCAAAGAGTTGACAAACGCCGCCGAGACCACCGAAGGTTGGACG
CTGGTATCGCAGCATGGGGGAACTGCAACCTATTTCCAGCCACTGGGGGT
CACTGGGAGAGGGAAGACGGAGGAGGCATCTTTACAGAGGAAGCAAGAGG
TTGAGGACGGGATGGTGGGAGAGGAAGTGGCGGACCCAGAGCATTCGATC
CGCATCCGGGTGGAGGGGGAGGTCGCCTGCTCCCCCATGGAGCAGCTAGC
GGCGATGCGTGAGGCGGATCAGTACAAGCTGTGGATGCCCCTCTGTCTGG
AGTCCGAGCTCCTGCACCGAGAGGGGAACGCCGATCAGGTCCTCTGGTGG
TCTATGGGCATTCCCCGGATGTTCACCTGGGACGTGCTTTTGCACGCCTG
GGGCGCGGACTGCATGCTGGAGGACGGTTCGGTGGTGATCGTGGGCGGGT
CCATCCGCGCCAGTGACCGCGTGCCTCCGGAACGTTTGCCGCTGCCCCCG
GCCGGGTGGGGCTCGTGGCGCGTCTCCCTCCACCAGTTTCGGATCCGTTT
TAAGGTCGTGTCCCCGAACACCAGCCATATCACCGCCTCTTTCATCCTCG
ACCCTAAGCTACGCGCCAAGACCCTAGTCAATTACGTCATTAAGAGAGGC
GCGGCTTTGAGCCTCAGCTTTTTGCGGAGCCACGCCGAGAAGGTCTTGAG
CCTAGGGGCCGCCCACCCGCTCTTCCCAGTCCTCCTCGCCGATCCCTTTT
ATCGCTCCTTCCTGGCCCCCCGCGTCCTTTGGTACGTCCGGCAGCATCTT
TCCACCACCGCGGAGGCAGCGAGGAAGGGGGAGGATGATGGCGTACCTGC
AATCCTACGACTTTTGCATATCGACCTCGCCAAGGCCGAGGCCTGTGACC
CCTACCCGCCCGCCCGGACGACTGCTTCCACTGACCCGCCCCCGGGTCCC
TCGCGGGCCTGGGAGCCTAAGGATGACAAGGAAGGAGCGAAAGAGAAAGA
TAAGGGAGACGAATGCCTAGGGAGGGTACCCTCAATTTCTAAAGGGTTGG
AGGCGCTTAAGGGGGCCGGAGGAGGGGAAGAACTAGGCGGGGAGGAGCAC
GGAGTGGGCGAATGCGGGCCCGTCACCGCCAAGGTCCTCGGGGTCTTGGG
GGCTCTGGTTGCGGTGTATGTCTACATAGAATGTCAAGCGTGGCTATATG
GATGTTGA back to topprotein sequence of rna6784 >rna6784-protein ID=rna6784-protein|Name=rna6784|organism=Nannochloropsis gaditana|type=polypeptide|length=262bp
MLNENPWGGLSSKLLDQSKQGASSFQQSSKEIRKTWMFGSKTAQKWSSRS
PHFLFRGLIAMSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRF
ANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDW
KTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTG
RRGKTVGPAGKKLLEALTLSDRDSSLFLKSSKADEERGEEKELLSLKSVI
CRIMKETIATFQ back to topmRNA from alignment at CM002469.1:493696..495868- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6784 ID=rna6784|Name=rna6784|organism=Nannochloropsis gaditana|type=mRNA|length=2173bp|location=Sequence derived from alignment at CM002469.1:493696..495868- (Nannochloropsis gaditana)
ATGCTCAACGAGAACCCGTGGGGAGGGTTGTCAAGCAAACTACTGGATCA
AAGTAAACAGGGTGCTTCAAGCTTTCAACAATCAAGTAAAGAAATCCGAA
AAACTTGGATGTTTGGTGATATTTATCACCTGGTGCAGGTATGACTTCCG
TCGTCGGATAGCGTCCCTCTGCCCTGTCTCTTCGCCGCAAGCTTTTCTCG
TTTTCTCGGTTGCCCCCCGTGTGTTCTCCTCTTCACTATTACGCTACGCA
TGCTTTAAATACAAACTACGACAATCTGTATCGTCCACGATGAGTGTCTT
ACTGGTTTGTCTGCAAGGCTCATCAGTAAAAATAATGAACTCTCTCGTAC
AATTCATCATCTCTCGAACCACGCTTGCTACTCATGTCCCTCAAGGTAGC
ATGACCGAGGAATCAGGTGCATTGCATTGAATGATTGAGCGCTTAATGGT
CTTATTCTGCCGTACTCATGCACAAAAAGCTCTAATGAAGGGCGTTGTAT
GTGTTTTCCGGGTTGATTTCACCAAGGGCGTGGTGAACGACAAATGAAAA
AAAGGTGTCGGGCGTGCTGCGATTGACTGTTCCAATGCTCCAACAACACG
CTCTATCTCAATAGTCAATGGGAGCCGGTCAACCGACTCAGAAACGTTTT
AGAAGCAATCGGCGCTAATACTGATCACATCACCTGGTGCGACAAATCGT
TGTGTGCGATTGGCGCCACAGTCTGTGTCGCGGCGACAAGTCTGTGGCCC
TGAAGGCGAGTGGCGGACACTCTCTCATCACCCTCCCGAACTAACACCCT
TTGGCAAGAAGGGTAGTGCTGCGTCAGATGGAATAATTTGAACTATATGC
AAGGCGAGGAAATGATGGCTGTGAGAAGCTATGACAGCAAGGGGAGGGGA
GACAGTTTTTGGCTGGCTCCCGGCCGTCGGAGGCATTCTTCCACCACCCT
GGCGCCCTGTATTCTCCGCCTCCCTCCTATTTAACCAAAGGAGATTTCCA
CCACAAAAAAGAAGACAGTAGCAAATGAACGATAAATGTGCTATGTGTCG
TTGCTCAACTCACCGCTGAACTGGGATATTCGACAAAACATAGGAAGCAA
GACAGCGCAGAAGTGGAGCTCCCGTTCTCCTCACTTCCTCTTTCGCGGCT
TGATTGCAATGGTGCGTACAATAACAATATCGGAGTAGCGTCGCAATATT
GTACAATGTTGACAATCCTAAGGGAATATCTGGAGATGTCTAGAGTCAGT
GAAAGCTTTGCGCGAGGCGTGTCGACGGAGAGGGCGCAGGCCCCTCTGTC
GCGCCGGGTGAGAGCCATGGCTCAGGATGATGCGCATACTCTTCGGGCTG
GAGCGAAAGTTTCTTCAGAAGCGTGTACTTGAAAGTTTTTAGGCGGACAA
TATAATGAAGTGCTCACGCGCGGGCCGCCGTACGAATCATCTGTCCTCCG
CTTTCTCACTTTCCGTATTGAACTCTATCACCTTCACACCCACAGTCTTT
AATAATCACACCCGAATTTCAACATATCCTTCGTATCCTGAACACGAACG
TGGACGGGACCCGATCAGTGCAGTATGCCCTGACCTCCATTAAAGGCGTT
GGACGGCGATTTGCCAACGTTGTGTGCAAGAAAGCCGAAATCGACCTGAA
TCAGCGGGCGGGAGAGTTGACACAGGAGAAGCTGGAGGAAGTGATTGCAA
TTGTCTCAAATCCCAAGGCATTCAAGATTCCGGATTGGTTTCTGAACAGG
CAGCGAGACTGGAAAACGAATAAGCCCTCGCAAGCAACGTCGAACGTGGT
AGACACGAAGCTGCGCGAAGATCTGGAGCGATTGAAGAAAATCCGATCAC
ACCGTGGTATTCGCCACTACTGGGGTGTGCGCGTGCGTGGACAGCATACA
AAAACCACAGGCCGCCGGGGGAAGACCGTGGGTCCTGCAGGAAAGAAGTA
AAGCACACGACGAGTATTGCACACGGGGGGTAAAGAGTGGGAAATGTTGC
TGGTTTGACGTGATGGTAGATTACTAGAAGCCCTCACACTGTCTGATCGC
GATTCTAGTCTCTTTCTAAAAAGCTCCAAAGCGGATGAGGAGCGAGGAGA
GGAGAAAGAGCTACTGTCGCTTAAATCAGTGATCTGTCGAATTATGAAGG
AAACAATCGCCACTTTCCAGTAG back to topCoding sequence (CDS) from alignment at CM002469.1:493696..495868- >rna6784 ID=rna6784|Name=rna6784|organism=Nannochloropsis gaditana|type=CDS|length=3156bp|location=Sequence derived from alignment at CM002469.1:493696..495868- (Nannochloropsis gaditana)
ATTACTAGAAGCCCTCACACTGTCTGATCGCGATTCTAGTCTCTTTCTAA
AAAGCTCCAAAGCGGATGAGGAGCGAGGAGAGGAGAAAGAGCTACTGTCG
CTTAAATCAGTGATCTGTCGAATTATGAAGGAAACAATCGCCACTTTCCA
GTAGTCTTTAATAATCACACCCGAATTTCAACATATCCTTCGTATCCTGA
ACACGAACGTGGACGGGACCCGATCAGTGCAGTATGCCCTGACCTCCATT
AAAGGCGTTGGACGGCGATTTGCCAACGTTGTGTGCAAGAAAGCCGAAAT
CGACCTGAATCAGCGGGCGGGAGAGTTGACACAGGAGAAGCTGGAGGAAG
TGATTGCAATTGTCTCAAATCCCAAGGCATTCAAGATTCCGGATTGGTTT
CTGAACAGGCAGCGAGACTGGAAAACGAATAAGCCCTCGCAAGCAACGTC
GAACGTGGTAGACACGAAGCTGCGCGAAGATCTGGAGCGATTGAAGAAAA
TCCGATCACACCGTGGTATTCGCCACTACTGGGGTGTGCGCGTGCGTGGA
CAGCATACAAAAACCACAGGCCGCCGGGGGAAGACCGTGGGTCCTGCAGG
AAAGAAGAAGCAAGACAGCGCAGAAGTGGAGCTCCCGTTCTCCTCACTTC
CTCTTTCGCGGCTTGATTGCAATGATGCTCAACGAGAACCCGTGGGGAGG
GTTGTCAAGCAAACTACTGGATCAAAGTAAACAGGGTGCTTCAAGCTTTC
AACAATCAAGTAAAGAAATCCGAAAAACTTGGATGTTTGATTACTAGAAG
CCCTCACACTGTCTGATCGCGATTCTAGTCTCTTTCTAAAAAGCTCCAAA
GCGGATGAGGAGCGAGGAGAGGAGAAAGAGCTACTGTCGCTTAAATCAGT
GATCTGTCGAATTATGAAGGAAACAATCGCCACTTTCCAGTAGTCTTTAA
TAATCACACCCGAATTTCAACATATCCTTCGTATCCTGAACACGAACGTG
GACGGGACCCGATCAGTGCAGTATGCCCTGACCTCCATTAAAGGCGTTGG
ACGGCGATTTGCCAACGTTGTGTGCAAGAAAGCCGAAATCGACCTGAATC
AGCGGGCGGGAGAGTTGACACAGGAGAAGCTGGAGGAAGTGATTGCAATT
GTCTCAAATCCCAAGGCATTCAAGATTCCGGATTGGTTTCTGAACAGGCA
GCGAGACTGGAAAACGAATAAGCCCTCGCAAGCAACGTCGAACGTGGTAG
ACACGAAGCTGCGCGAAGATCTGGAGCGATTGAAGAAAATCCGATCACAC
CGTGGTATTCGCCACTACTGGGGTGTGCGCGTGCGTGGACAGCATACAAA
AACCACAGGCCGCCGGGGGAAGACCGTGGGTCCTGCAGGAAAGAAGAAGC
AAGACAGCGCAGAAGTGGAGCTCCCGTTCTCCTCACTTCCTCTTTCGCGG
CTTGATTGCAATGATGCTCAACGAGAACCCGTGGGGAGGGTTGTCAAGCA
AACTACTGGATCAAAGTAAACAGGGTGCTTCAAGCTTTCAACAATCAAGT
AAAGAAATCCGAAAAACTTGGATGTTTGATTACTAGAAGCCCTCACACTG
TCTGATCGCGATTCTAGTCTCTTTCTAAAAAGCTCCAAAGCGGATGAGGA
GCGAGGAGAGGAGAAAGAGCTACTGTCGCTTAAATCAGTGATCTGTCGAA
TTATGAAGGAAACAATCGCCACTTTCCAGTAGTCTTTAATAATCACACCC
GAATTTCAACATATCCTTCGTATCCTGAACACGAACGTGGACGGGACCCG
ATCAGTGCAGTATGCCCTGACCTCCATTAAAGGCGTTGGACGGCGATTTG
CCAACGTTGTGTGCAAGAAAGCCGAAATCGACCTGAATCAGCGGGCGGGA
GAGTTGACACAGGAGAAGCTGGAGGAAGTGATTGCAATTGTCTCAAATCC
CAAGGCATTCAAGATTCCGGATTGGTTTCTGAACAGGCAGCGAGACTGGA
AAACGAATAAGCCCTCGCAAGCAACGTCGAACGTGGTAGACACGAAGCTG
CGCGAAGATCTGGAGCGATTGAAGAAAATCCGATCACACCGTGGTATTCG
CCACTACTGGGGTGTGCGCGTGCGTGGACAGCATACAAAAACCACAGGCC
GCCGGGGGAAGACCGTGGGTCCTGCAGGAAAGAAGAAGCAAGACAGCGCA
GAAGTGGAGCTCCCGTTCTCCTCACTTCCTCTTTCGCGGCTTGATTGCAA
TGATGCTCAACGAGAACCCGTGGGGAGGGTTGTCAAGCAAACTACTGGAT
CAAAGTAAACAGGGTGCTTCAAGCTTTCAACAATCAAGTAAAGAAATCCG
AAAAACTTGGATGTTTGATTACTAGAAGCCCTCACACTGTCTGATCGCGA
TTCTAGTCTCTTTCTAAAAAGCTCCAAAGCGGATGAGGAGCGAGGAGAGG
AGAAAGAGCTACTGTCGCTTAAATCAGTGATCTGTCGAATTATGAAGGAA
ACAATCGCCACTTTCCAGTAGTCTTTAATAATCACACCCGAATTTCAACA
TATCCTTCGTATCCTGAACACGAACGTGGACGGGACCCGATCAGTGCAGT
ATGCCCTGACCTCCATTAAAGGCGTTGGACGGCGATTTGCCAACGTTGTG
TGCAAGAAAGCCGAAATCGACCTGAATCAGCGGGCGGGAGAGTTGACACA
GGAGAAGCTGGAGGAAGTGATTGCAATTGTCTCAAATCCCAAGGCATTCA
AGATTCCGGATTGGTTTCTGAACAGGCAGCGAGACTGGAAAACGAATAAG
CCCTCGCAAGCAACGTCGAACGTGGTAGACACGAAGCTGCGCGAAGATCT
GGAGCGATTGAAGAAAATCCGATCACACCGTGGTATTCGCCACTACTGGG
GTGTGCGCGTGCGTGGACAGCATACAAAAACCACAGGCCGCCGGGGGAAG
ACCGTGGGTCCTGCAGGAAAGAAGAAGCAAGACAGCGCAGAAGTGGAGCT
CCCGTTCTCCTCACTTCCTCTTTCGCGGCTTGATTGCAATGATGCTCAAC
GAGAACCCGTGGGGAGGGTTGTCAAGCAAACTACTGGATCAAAGTAAACA
GGGTGCTTCAAGCTTTCAACAATCAAGTAAAGAAATCCGAAAAACTTGGA
TGTTTG back to top
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