EWM23897.1, cds6768 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|585105179|gb|EWM23897.1| (40s ribosomal protein s18 [Nannochloropsis gaditana]) HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0 Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
Query: 1 MLNENPWGGLSSKLLDQSKQGASSFQQSSKEIRKTWMFGSKTAQKWSSRSPHFLFRGLIAMSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKKLLEALTLSDRDSSLFLKSSKADEERGEEKELLSLKSVICRIMKETIATFQ 262
MLNENPWGGLSSKLLDQSKQGASSFQQSSKEIRKTWMFGSKTAQKWSSRSPHFLFRGLIAMSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKKLLEALTLSDRDSSLFLKSSKADEERGEEKELLSLKSVICRIMKETIATFQ
Sbjct: 1 MLNENPWGGLSSKLLDQSKQGASSFQQSSKEIRKTWMFGSKTAQKWSSRSPHFLFRGLIAMSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKKLLEALTLSDRDSSLFLKSSKADEERGEEKELLSLKSVICRIMKETIATFQ 262
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|299115551|emb|CBN75754.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 262.307 bits (669), Expect = 1.407e-85 Identity = 118/166 (71.08%), Postives = 143/166 (86.14%), Query Frame = 0
Query: 47 SSRSPHFLFRGLIAMSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
S RS L R + AMSL+I+PEFQHILRILNTN+DG R VQY+LTSI+GVGRRFAN++CKKAE+D N+RAGE+T +++E+++AI+ NP+ FKIPDWFLNRQ+DWKT K +Q +S +D KLR+DLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGK V G+K
Sbjct: 27 SCRSGSVLLRRVRAMSLVISPEFQHILRILNTNIDGRRKVQYSLTSIRGVGRRFANLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQTIDQKLRDDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGGRK 192
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|934151393|gb|KPM02215.1| (40S ribosomal protein S18-like protein [Sarcoptes scabiei]) HSP 1 Score: 243.817 bits (621), Expect = 8.765e-79 Identity = 109/152 (71.71%), Postives = 135/152 (88.82%), Query Frame = 0
Query: 61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
MSLII FQHILR++NTN+DG R V +ALTSIKG+GRRF+N+VCKKA++DLN+RAGEL++E++E +I I+SNP+ FKIPDWFLNRQ+D + K SQ TSN +DTKLREDLERLKKIR+HRG+RH+WG+RVRGQHTKTTGRRG+TVG + KK
Sbjct: 1 MSLIIPERFQHILRVMNTNIDGNRKVMFALTSIKGIGRRFSNIVCKKADVDLNKRAGELSEEEVERLITIISNPRQFKIPDWFLNRQKDIRDGKYSQVTSNNLDTKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|802790874|ref|XP_012092218.1| (40S ribosomal protein S18 [Jatropha curcas] >gi|247421835|gb|ACS96445.1| S18.A ribosomal protein [Jatropha curcas] >gi|643704379|gb|KDP21443.1| hypothetical protein JCGZ_21914 [Jatropha curcas]) HSP 1 Score: 243.047 bits (619), Expect = 1.763e-78 Identity = 106/152 (69.74%), Postives = 134/152 (88.16%), Query Frame = 0
Query: 61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
MSL+ EFQHILR+LNTNVDG + + +ALTSIKG+GRRFAN+VCKKA++D+N+RAGEL+ E+L++++ IV+NP+ FKIPDWFLNRQ+D+K K SQ SN +D KLR+DLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRGKTVG + K+
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAEELDKLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|224082650|ref|XP_002306780.1| (hypothetical protein POPTR_0005s23280g [Populus trichocarpa] >gi|743867279|ref|XP_011032690.1| PREDICTED: 40S ribosomal protein S18-like [Populus euphratica] >gi|118481499|gb|ABK92692.1| unknown [Populus trichocarpa] >gi|222856229|gb|EEE93776.1| hypothetical protein POPTR_0005s23280g [Populus trichocarpa]) HSP 1 Score: 242.662 bits (618), Expect = 2.054e-78 Identity = 106/152 (69.74%), Postives = 134/152 (88.16%), Query Frame = 0
Query: 61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
MSL+ EFQHILR+LNTNVDG + + +ALTSIKG+GRRFAN+VCKKA++D+N+RAGEL+ E+L++++ IV+NP+ FKIPDWFLNRQ+D+K K SQ SN +D KLR+DLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRGKTVG + K+
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAEELDKLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|187474825|gb|ACD11988.1| (hypothetical protein [Isometrus maculatus]) HSP 1 Score: 242.276 bits (617), Expect = 2.792e-78 Identity = 107/152 (70.39%), Postives = 137/152 (90.13%), Query Frame = 0
Query: 61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
MSL+I +FQHILR++NTN+DG R V +ALT+IKGVGRRF+N+VCKKA++DLN+RAGELT+E++E+++ I+SNP+ +KIPDWFLNRQ+D K K SQ TSN+++ KLREDLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRG+TVG + KK
Sbjct: 1 MSLVIPDKFQHILRVMNTNIDGRRKVMFALTAIKGVGRRFSNLVCKKADVDLNKRAGELTEEEVEKLVTIMSNPRQYKIPDWFLNRQKDVKDGKYSQVTSNILEIKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|224066487|ref|XP_002302108.1| (hypothetical protein POPTR_0002s05220g [Populus trichocarpa] >gi|743840232|ref|XP_011026149.1| PREDICTED: 40S ribosomal protein S18-like [Populus euphratica] >gi|118481417|gb|ABK92651.1| unknown [Populus trichocarpa] >gi|222843834|gb|EEE81381.1| hypothetical protein POPTR_0002s05220g [Populus trichocarpa]) HSP 1 Score: 241.506 bits (615), Expect = 5.257e-78 Identity = 105/152 (69.08%), Postives = 134/152 (88.16%), Query Frame = 0
Query: 61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
M+L+ EFQHILR+LNTNVDG + + +ALTSIKG+GRRFAN+VCKKA++D+N+RAGEL+ E+L++++ IV+NP+ FKIPDWFLNRQ+D+K K SQ SN +D KLR+DLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRGKTVG + K+
Sbjct: 1 MALVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAEELDKLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|802607700|ref|XP_012073942.1| (40S ribosomal protein S18 [Jatropha curcas] >gi|643728529|gb|KDP36554.1| hypothetical protein JCGZ_08321 [Jatropha curcas] >gi|1130846539|dbj|GAV72947.1| Ribosomal_S13 domain-containing protein [Cephalotus follicularis]) HSP 1 Score: 241.506 bits (615), Expect = 5.553e-78 Identity = 106/152 (69.74%), Postives = 132/152 (86.84%), Query Frame = 0
Query: 61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
MSL+ EFQHILR+LNTNVDG + + +ALTSIKG+GRRFAN+VCKKA++D+N+RAGELT +L+ ++ IV+NP+ FKIPDWFLNRQ+D+K K SQ SN +D KLR+DLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRGKTVG + K+
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|255559398|ref|XP_002520719.1| (PREDICTED: 40S ribosomal protein S18 [Ricinus communis] >gi|223540104|gb|EEF41681.1| 40S ribosomal protein S18, putative [Ricinus communis] >gi|313586541|gb|ADR71281.1| 40S ribosomal protein S18A [Hevea brasiliensis] >gi|1035920135|gb|OAY49725.1| hypothetical protein MANES_05G077900 [Manihot esculenta] >gi|1035932074|gb|OAY61660.1| hypothetical protein MANES_01G206600 [Manihot esculenta]) HSP 1 Score: 241.506 bits (615), Expect = 5.614e-78 Identity = 105/152 (69.08%), Postives = 134/152 (88.16%), Query Frame = 0
Query: 61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
MSL+ +FQHILR+LNTNVDG + + +ALTSIKG+GRRFAN+VCKKA++D+N+RAGEL+ E+L++++ IV+NP+ FKIPDWFLNRQ+D+K K SQ SN +D KLR+DLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRGKTVG + K+
Sbjct: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAEELDKLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|1048045312|ref|XP_017494130.1| (PREDICTED: 40S ribosomal protein S18 [Rhagoletis zephyria]) HSP 1 Score: 241.506 bits (615), Expect = 6.336e-78 Identity = 108/152 (71.05%), Postives = 135/152 (88.82%), Query Frame = 0
Query: 61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
MSLII FQHILR++NTN+DG R V +ALTSIKG+GRRF+N+VCKKA++DLN+RAGEL++E++E +I I+SNP+ FKIP+WFLNRQ+D + K SQ TSN +DTKLREDLERLKKIR+HRG+RH+WG+RVRGQHTKTTGRRG+TVG + KK
Sbjct: 1 MSLIIPERFQHILRVMNTNIDGNRKVMFALTSIKGIGRRFSNIVCKKADVDLNKRAGELSEEEVERLITIISNPRQFKIPNWFLNRQKDIRDGKFSQVTSNNLDTKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152 The following BLAST results are available for this feature:
BLAST of EWM23897.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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