EWM23897.1, cds6768 (CDS) Nannochloropsis gaditana

Overview
NameEWM23897.1
Unique Namecds6768
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:495754..495868 -
Alignment locationCM002469.1:494708..494775 -
Alignment locationCM002469.1:493922..494373 -
Alignment locationCM002469.1:493696..493849 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23897.1
Product40s ribosomal protein s18
Orig transcript idgnl|cribi|Naga_100113g12.9963.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:495754..495868 -
CM002469.1supercontigCM002469.1:494708..494775 -
CM002469.1supercontigCM002469.1:493922..494373 -
CM002469.1supercontigCM002469.1:493696..493849 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003676nucleic acid binding
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR010979Ribosomal_S13-like_H2TH
IPR018269Ribosomal_S13_CS
IPR001892Ribosomal_S13
IPR02743730s_Rbsml_prot_S13_C
Homology
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|585105179|gb|EWM23897.1| (40s ribosomal protein s18 [Nannochloropsis gaditana])

HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
Query:    1 MLNENPWGGLSSKLLDQSKQGASSFQQSSKEIRKTWMFGSKTAQKWSSRSPHFLFRGLIAMSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKKLLEALTLSDRDSSLFLKSSKADEERGEEKELLSLKSVICRIMKETIATFQ 262
            MLNENPWGGLSSKLLDQSKQGASSFQQSSKEIRKTWMFGSKTAQKWSSRSPHFLFRGLIAMSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKKLLEALTLSDRDSSLFLKSSKADEERGEEKELLSLKSVICRIMKETIATFQ
Sbjct:    1 MLNENPWGGLSSKLLDQSKQGASSFQQSSKEIRKTWMFGSKTAQKWSSRSPHFLFRGLIAMSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKKLLEALTLSDRDSSLFLKSSKADEERGEEKELLSLKSVICRIMKETIATFQ 262          
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|299115551|emb|CBN75754.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 262.307 bits (669), Expect = 1.407e-85
Identity = 118/166 (71.08%), Postives = 143/166 (86.14%), Query Frame = 0
Query:   47 SSRSPHFLFRGLIAMSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
            S RS   L R + AMSL+I+PEFQHILRILNTN+DG R VQY+LTSI+GVGRRFAN++CKKAE+D N+RAGE+T +++E+++AI+ NP+ FKIPDWFLNRQ+DWKT K +Q +S  +D KLR+DLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGK V   G+K
Sbjct:   27 SCRSGSVLLRRVRAMSLVISPEFQHILRILNTNIDGRRKVQYSLTSIRGVGRRFANLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQTIDQKLRDDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGGRK 192          
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|934151393|gb|KPM02215.1| (40S ribosomal protein S18-like protein [Sarcoptes scabiei])

HSP 1 Score: 243.817 bits (621), Expect = 8.765e-79
Identity = 109/152 (71.71%), Postives = 135/152 (88.82%), Query Frame = 0
Query:   61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
            MSLII   FQHILR++NTN+DG R V +ALTSIKG+GRRF+N+VCKKA++DLN+RAGEL++E++E +I I+SNP+ FKIPDWFLNRQ+D +  K SQ TSN +DTKLREDLERLKKIR+HRG+RH+WG+RVRGQHTKTTGRRG+TVG + KK
Sbjct:    1 MSLIIPERFQHILRVMNTNIDGNRKVMFALTSIKGIGRRFSNIVCKKADVDLNKRAGELSEEEVERLITIISNPRQFKIPDWFLNRQKDIRDGKYSQVTSNNLDTKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|802790874|ref|XP_012092218.1| (40S ribosomal protein S18 [Jatropha curcas] >gi|247421835|gb|ACS96445.1| S18.A ribosomal protein [Jatropha curcas] >gi|643704379|gb|KDP21443.1| hypothetical protein JCGZ_21914 [Jatropha curcas])

HSP 1 Score: 243.047 bits (619), Expect = 1.763e-78
Identity = 106/152 (69.74%), Postives = 134/152 (88.16%), Query Frame = 0
Query:   61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
            MSL+   EFQHILR+LNTNVDG + + +ALTSIKG+GRRFAN+VCKKA++D+N+RAGEL+ E+L++++ IV+NP+ FKIPDWFLNRQ+D+K  K SQ  SN +D KLR+DLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRGKTVG + K+
Sbjct:    1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAEELDKLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152          
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|224082650|ref|XP_002306780.1| (hypothetical protein POPTR_0005s23280g [Populus trichocarpa] >gi|743867279|ref|XP_011032690.1| PREDICTED: 40S ribosomal protein S18-like [Populus euphratica] >gi|118481499|gb|ABK92692.1| unknown [Populus trichocarpa] >gi|222856229|gb|EEE93776.1| hypothetical protein POPTR_0005s23280g [Populus trichocarpa])

HSP 1 Score: 242.662 bits (618), Expect = 2.054e-78
Identity = 106/152 (69.74%), Postives = 134/152 (88.16%), Query Frame = 0
Query:   61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
            MSL+   EFQHILR+LNTNVDG + + +ALTSIKG+GRRFAN+VCKKA++D+N+RAGEL+ E+L++++ IV+NP+ FKIPDWFLNRQ+D+K  K SQ  SN +D KLR+DLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRGKTVG + K+
Sbjct:    1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAEELDKLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152          
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|187474825|gb|ACD11988.1| (hypothetical protein [Isometrus maculatus])

HSP 1 Score: 242.276 bits (617), Expect = 2.792e-78
Identity = 107/152 (70.39%), Postives = 137/152 (90.13%), Query Frame = 0
Query:   61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
            MSL+I  +FQHILR++NTN+DG R V +ALT+IKGVGRRF+N+VCKKA++DLN+RAGELT+E++E+++ I+SNP+ +KIPDWFLNRQ+D K  K SQ TSN+++ KLREDLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRG+TVG + KK
Sbjct:    1 MSLVIPDKFQHILRVMNTNIDGRRKVMFALTAIKGVGRRFSNLVCKKADVDLNKRAGELTEEEVEKLVTIMSNPRQYKIPDWFLNRQKDVKDGKYSQVTSNILEIKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|224066487|ref|XP_002302108.1| (hypothetical protein POPTR_0002s05220g [Populus trichocarpa] >gi|743840232|ref|XP_011026149.1| PREDICTED: 40S ribosomal protein S18-like [Populus euphratica] >gi|118481417|gb|ABK92651.1| unknown [Populus trichocarpa] >gi|222843834|gb|EEE81381.1| hypothetical protein POPTR_0002s05220g [Populus trichocarpa])

HSP 1 Score: 241.506 bits (615), Expect = 5.257e-78
Identity = 105/152 (69.08%), Postives = 134/152 (88.16%), Query Frame = 0
Query:   61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
            M+L+   EFQHILR+LNTNVDG + + +ALTSIKG+GRRFAN+VCKKA++D+N+RAGEL+ E+L++++ IV+NP+ FKIPDWFLNRQ+D+K  K SQ  SN +D KLR+DLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRGKTVG + K+
Sbjct:    1 MALVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAEELDKLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152          
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|802607700|ref|XP_012073942.1| (40S ribosomal protein S18 [Jatropha curcas] >gi|643728529|gb|KDP36554.1| hypothetical protein JCGZ_08321 [Jatropha curcas] >gi|1130846539|dbj|GAV72947.1| Ribosomal_S13 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 241.506 bits (615), Expect = 5.553e-78
Identity = 106/152 (69.74%), Postives = 132/152 (86.84%), Query Frame = 0
Query:   61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
            MSL+   EFQHILR+LNTNVDG + + +ALTSIKG+GRRFAN+VCKKA++D+N+RAGELT  +L+ ++ IV+NP+ FKIPDWFLNRQ+D+K  K SQ  SN +D KLR+DLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRGKTVG + K+
Sbjct:    1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152          
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|255559398|ref|XP_002520719.1| (PREDICTED: 40S ribosomal protein S18 [Ricinus communis] >gi|223540104|gb|EEF41681.1| 40S ribosomal protein S18, putative [Ricinus communis] >gi|313586541|gb|ADR71281.1| 40S ribosomal protein S18A [Hevea brasiliensis] >gi|1035920135|gb|OAY49725.1| hypothetical protein MANES_05G077900 [Manihot esculenta] >gi|1035932074|gb|OAY61660.1| hypothetical protein MANES_01G206600 [Manihot esculenta])

HSP 1 Score: 241.506 bits (615), Expect = 5.614e-78
Identity = 105/152 (69.08%), Postives = 134/152 (88.16%), Query Frame = 0
Query:   61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
            MSL+   +FQHILR+LNTNVDG + + +ALTSIKG+GRRFAN+VCKKA++D+N+RAGEL+ E+L++++ IV+NP+ FKIPDWFLNRQ+D+K  K SQ  SN +D KLR+DLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRGKTVG + K+
Sbjct:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAEELDKLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152          
BLAST of EWM23897.1 vs. NCBI_GenBank
Match: gi|1048045312|ref|XP_017494130.1| (PREDICTED: 40S ribosomal protein S18 [Rhagoletis zephyria])

HSP 1 Score: 241.506 bits (615), Expect = 6.336e-78
Identity = 108/152 (71.05%), Postives = 135/152 (88.82%), Query Frame = 0
Query:   61 MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
            MSLII   FQHILR++NTN+DG R V +ALTSIKG+GRRF+N+VCKKA++DLN+RAGEL++E++E +I I+SNP+ FKIP+WFLNRQ+D +  K SQ TSN +DTKLREDLERLKKIR+HRG+RH+WG+RVRGQHTKTTGRRG+TVG + KK
Sbjct:    1 MSLIIPERFQHILRVMNTNIDGNRKVMFALTSIKGIGRRFSNIVCKKADVDLNKRAGELSEEEVERLITIISNPRQFKIPNWFLNRQKDIRDGKFSQVTSNNLDTKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
The following BLAST results are available for this feature:
BLAST of EWM23897.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105179|gb|EWM23897.1|0.000e+0100.0040s ribosomal protein s18 [Nannochloropsis gaditan... [more]
gi|299115551|emb|CBN75754.1|1.407e-8571.08conserved unknown protein [Ectocarpus siliculosus][more]
gi|934151393|gb|KPM02215.1|8.765e-7971.7140S ribosomal protein S18-like protein [Sarcoptes ... [more]
gi|802790874|ref|XP_012092218.1|1.763e-7869.7440S ribosomal protein S18 [Jatropha curcas] >gi|24... [more]
gi|224082650|ref|XP_002306780.1|2.054e-7869.74hypothetical protein POPTR_0005s23280g [Populus tr... [more]
gi|187474825|gb|ACD11988.1|2.792e-7870.39hypothetical protein [Isometrus maculatus][more]
gi|224066487|ref|XP_002302108.1|5.257e-7869.08hypothetical protein POPTR_0002s05220g [Populus tr... [more]
gi|802607700|ref|XP_012073942.1|5.553e-7869.7440S ribosomal protein S18 [Jatropha curcas] >gi|64... [more]
gi|255559398|ref|XP_002520719.1|5.614e-7869.08PREDICTED: 40S ribosomal protein S18 [Ricinus comm... [more]
gi|1048045312|ref|XP_017494130.1|6.336e-7871.05PREDICTED: 40S ribosomal protein S18 [Rhagoletis z... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6784rna6784Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications