rna6783, rna6783 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6783
Unique Name	rna6783
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1118
Alignment location	CM002469.1:491007..493008 -

Link to JBrowse

Properties


Property Name	Value
Product	START-like domain protein
Orig transcript id	gnl\|cribi\|Naga_100113g11.9977.mrna
Orig protein id	gnl\|cribi\|Naga_100113g11.9977
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:491007..493008 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100113g11	gene6557	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6783	rna6783-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23911.1	cds6767	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:491007..493008-
coding sequence from alignment at CM002469.1:491007..493008-

mRNA sequence

>rna6783 ID=rna6783|Name=rna6783|organism=Nannochloropsis gaditana|type=mRNA|length=1118bp
GGCATGACCAGATGGGGTCTTCTTTTGGCCATCGGGATGTGATATGTGTG
CTGCAGCACCTACAATTGAAAGCGCAGGATGATGAGATGGTGTGACAACC
ACAGTAGCAACAAATACGGGCATATCAATGGGCAATCGAGCCGCCCGGAC
AGGCATCCACTGGGAGGAGGTTGGTCAGAGAATCCAAATGCGGAGGAAAG
TTACCGTTCTCGTCGTCTGTATTTTAAAGTCGTGTCGTTGTCTTGTTTGA
GTTTGTTGTGGTTTGATATTGATCAACGATAGGCGACTCCTCACACACTT
CCTTTTTTGATGTCGATGTTCGGCAGGGTTTACGCTCACTTTCCCAGTTA
GGGTCCTAGAAGCATGGCCGGAGTCAACCCTGCGACTTCGCAGGATTACG
AGGAGGATAAACGCAAGATCGCGGCTGTAATCCCTTATTACGCCTTCAAA
GGCATTGACCGCTTTTACGACATCAGCGGCCTTCTGCTATCTCCTGCTTT
GCTTCGTCGGACCATAGAAATACTAGTCGAAAGGTACAAGGGCATGGCGA
TCGACAAGATCGGGGGCTTCGACGCCCGAGGCTTCCTGTTGGGCACGCCG
TTGGCTTTGGAATTGGACATCCCCTTCTTCATGCTACGAAAGCAAAGCAA
ACTTCCAAATTCTGTGACAGGGGACAGCTATACAAAGGAGTACGAGGGTG
ACGATGGTAAGGGGGGGGACGCCCTGTGCATCTCTCGCACTGCGATCATC
CCGGGGGACAAGGTTCTGCTGGTCGACGACCTGATCGCGACCGGGGGAAC
GCTCTTGGCGGGCTTGGACTTGGTCCACGCGCGACAAGGAGTGGTGGTGG
AAGCGGCGTGCATGATTGAGCTGGGATTTCTGGAAGGTGGAAAGAAAGTG
CGCGAGAGGAATCCTAACGTGACTGTGTGGTCTTTACTCTCCGAGGATCA
CTTGCAGACGAGAGGCCTCCCCCCGGGGACGGGAGGAAATAGCGCCGCGG
GCTCTGCCTGTGCTTCGGATGGGAAGTGTTGAGACGGTTGAGAAAGAAGG
TGGGATGGAATAAGATTCAGAGGAACCGTTGGGTCACCGAAAGCACAATC
TTGGAGCAATGAGCGAGA

protein sequence of rna6783

>rna6783-protein ID=rna6783-protein|Name=rna6783|organism=Nannochloropsis gaditana|type=polypeptide|length=585bp
MSHHASKFPHPANTTEQMSDNIRRKKFFFLPIRRHLRRRHPQSGHVTDIA
SRNTDASISSQYSPHHRIGKHNPEERRCRQQRPITSSSPPQSSRKEADRS
PLRHGVLIPVEPLNLAASLEEVLRCYAVDRLMASAALLSALEQRIGIALK
SDDALVREPAKVVRGCMQKPEMAKRLEVIRLRGSQCKELTNAAETTEGWT
LVSQHGGTATYFQPLGVTGRGKTEEASLQRKQEVEDGMVGEEVADPEHSI
RIRVEGEVACSPMEQLAAMREADQYKLWMPLCLESELLHREGNADQVLWW
SMGIPRMFTWDVLLHAWGADCMLEDGSVVIVGGSIRASDRVPPERLPLPP
AGWGSWRVSLHQFRIRFKVVSPNTSHITASFILDPKLRAKTLVNYVIKRG
AALSLSFLRSHAEKVLSLGAAHPLFPVLLADPFYRSFLAPRVLWYVRQHL
STTAEAARKGEDDGVPAILRLLHIDLAKAEACDPYPPARTTASTDPPPGP
SRAWEPKDDKEGAKEKDKGDECLGRVPSISKGLEALKGAGGGEELGGEEH
GVGECGPVTAKVLGVLGALVAVYVYIECQAWLYGC

mRNA from alignment at CM002469.1:491007..493008-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6783 ID=rna6783|Name=rna6783|organism=Nannochloropsis gaditana|type=mRNA|length=2002bp|location=Sequence derived from alignment at CM002469.1:491007..493008- (Nannochloropsis gaditana)
ATGTCTCATCACGCGTCCAAATTCCCGCATCCGGCCAACACTACGGAGCA
AATGTCTGATAACATCAGAAGGAAAAAGTTTTTTTTCTTGCCCATCAGAA
GGCATTTGCGTCGCCGCCATCCGCAGTCAGGGCATGTTACAGACATAGCC
TCGCGCAATACTGATGCATCTATATCCTCCCAGTACTCTCCACATCACCG
CATCGGCAAGCATAATCCCGAGGAACGGAGATGTAGGCAACAACGTCCAA
TCACCTCGTCTAGCCCTCCGCAGTCCTCAAGGAAGGAGGCCGACAGGAGT
CCTCTTCGTCACGGCGTCCTCATTCCGGTTGAACCCCTCAATCTGGCTGC
CTCTCTCGAGGAAGTCCTGCGCTGCTATGCGGTCGATCGCCTTATGGCGA
GCGCGGCATTGTTAAGTGCACTTGAGCAGCGCATAGGCATTGCCCTAAAG
AGTGACGACGCGTTGGTCCGTGAGCCAGCCAAGGTGGTAAGAGGGTGCAT
GCAGAAACCGGAGATGGCCAAGCGCTTGGAGGTGATCCGCCTGAGGGGTT
CGCAATGCAAAGAGTTGACAAACGCCGCCGAGACCACCGAAGGTTGGACG
CTGGTATCGCAGCATGGGGGAACTGCAACCTATTTCCAGCCACTGGGGGT
CACTGGGAGAGGGAAGACGGAGGAGGCATCTTTACAGAGGAAGCAAGAGG
TTGAGGACGGGATGGTGGGAGAGGAAGTGGCGGACCCAGAGCATTCGATC
CGCATCCGGGTGGAGGGGGAGGTCGCCTGCTCCCCCATGGAGCAGCTAGC
GGCGATGCGTGAGGCGGATCAGTACAAGCTGTGGATGCCCCTCTGTCTGG
AGTCCGAGCTCCTGCACCGAGAGGGGAACGCCGATCAGGTCCTCTGGTGG
TCTATGGGCATTCCCCGGATGTTCACCTGGGACGTGCTTTTGCACGCCTG
GGGCGCGGACTGCATGCTGGAGGACGGTTCGGTGGTGATCGTGGGCGGGT
CCATCCGCGCCAGTGACCGCGTGCCTCCGGAACGTTTGCCGCTGCCCCCG
GCCGGGTGGGGCTCGTGGCGCGTCTCCCTCCACCAGTTTCGGATCCGTTT
TAAGGTCGTGTCCCCGAACACCAGCCATATCACCGCCTCTTTCATCCTCG
ACCCTAAGCTACGCGCCAAGGTAGGCAAGGCAAGCGAAATCTCACTCCGC
CGTGGTCTTCTCCTTTTCCCCGCTTTCGCGCTGTTCTCCCCCTTGCATTT
TTTTTCGTATTCCCACTTTAGCAGGGACCTGATCCCTGCTTCCTATTTCC
ATATAGCTTCTCTCCTTCACGCCTCGTAAGAGTGGCAAGATCGTCGTGTC
CGTTTCCAAGTCCCTTCCTTTCTGACCCCTTGTTTCTCTCGATATCTCCC
ACCCGACGCCTTAGACCCTAGTCAATTACGTCATTAAGAGAGGCGCGGCT
TTGAGCCTCAGCTTTTTGCGGAGCCACGCCGAGAAGGTCTTGAGCCTAGG
GGCCGCCCACCCGCTCTTCCCAGTCCTCCTCGCCGATCCCTTTTATCGCT
CCTTCCTGGCCCCCCGCGTCCTTTGGTACGTCCGGCAGCATCTTTCCACC
ACCGCGGAGGCAGCGAGGAAGGGGGAGGATGATGGCGTACCTGCAATCCT
ACGACTTTTGCATATCGACCTCGCCAAGGCCGAGGCCTGTGACCCCTACC
CGCCCGCCCGGACGACTGCTTCCACTGACCCGCCCCCGGGTCCCTCGCGG
GCCTGGGAGCCTAAGGATGACAAGGAAGGAGCGAAAGAGAAAGATAAGGG
AGACGAATGCCTAGGGAGGGTACCCTCAATTTCTAAAGGGTTGGAGGCGC
TTAAGGGGGCCGGAGGAGGGGAAGAACTAGGCGGGGAGGAGCACGGAGTG
GGCGAATGCGGGCCCGTCACCGCCAAGGTCCTCGGGGTCTTGGGGGCTCT
GGTTGCGGTGTATGTCTACATAGAATGTCAAGCGTGGCTATATGGATGTT
GA

Coding sequence (CDS) from alignment at CM002469.1:491007..493008-

>rna6783 ID=rna6783|Name=rna6783|organism=Nannochloropsis gaditana|type=CDS|length=3516bp|location=Sequence derived from alignment at CM002469.1:491007..493008- (Nannochloropsis gaditana)
ACCCTAGTCAATTACGTCATTAAGAGAGGCGCGGCTTTGAGCCTCAGCTT
TTTGCGGAGCCACGCCGAGAAGGTCTTGAGCCTAGGGGCCGCCCACCCGC
TCTTCCCAGTCCTCCTCGCCGATCCCTTTTATCGCTCCTTCCTGGCCCCC
CGCGTCCTTTGGTACGTCCGGCAGCATCTTTCCACCACCGCGGAGGCAGC
GAGGAAGGGGGAGGATGATGGCGTACCTGCAATCCTACGACTTTTGCATA
TCGACCTCGCCAAGGCCGAGGCCTGTGACCCCTACCCGCCCGCCCGGACG
ACTGCTTCCACTGACCCGCCCCCGGGTCCCTCGCGGGCCTGGGAGCCTAA
GGATGACAAGGAAGGAGCGAAAGAGAAAGATAAGGGAGACGAATGCCTAG
GGAGGGTACCCTCAATTTCTAAAGGGTTGGAGGCGCTTAAGGGGGCCGGA
GGAGGGGAAGAACTAGGCGGGGAGGAGCACGGAGTGGGCGAATGCGGGCC
CGTCACCGCCAAGGTCCTCGGGGTCTTGGGGGCTCTGGTTGCGGTGTATG
TCTACATAGAATGTCAAGCGTGGCTATATGGATGTTGAATGTCTCATCAC
GCGTCCAAATTCCCGCATCCGGCCAACACTACGGAGCAAATGTCTGATAA
CATCAGAAGGAAAAAGTTTTTTTTCTTGCCCATCAGAAGGCATTTGCGTC
GCCGCCATCCGCAGTCAGGGCATGTTACAGACATAGCCTCGCGCAATACT
GATGCATCTATATCCTCCCAGTACTCTCCACATCACCGCATCGGCAAGCA
TAATCCCGAGGAACGGAGATGTAGGCAACAACGTCCAATCACCTCGTCTA
GCCCTCCGCAGTCCTCAAGGAAGGAGGCCGACAGGAGTCCTCTTCGTCAC
GGCGTCCTCATTCCGGTTGAACCCCTCAATCTGGCTGCCTCTCTCGAGGA
AGTCCTGCGCTGCTATGCGGTCGATCGCCTTATGGCGAGCGCGGCATTGT
TAAGTGCACTTGAGCAGCGCATAGGCATTGCCCTAAAGAGTGACGACGCG
TTGGTCCGTGAGCCAGCCAAGGTGGTAAGAGGGTGCATGCAGAAACCGGA
GATGGCCAAGCGCTTGGAGGTGATCCGCCTGAGGGGTTCGCAATGCAAAG
AGTTGACAAACGCCGCCGAGACCACCGAAGGTTGGACGCTGGTATCGCAG
CATGGGGGAACTGCAACCTATTTCCAGCCACTGGGGGTCACTGGGAGAGG
GAAGACGGAGGAGGCATCTTTACAGAGGAAGCAAGAGGTTGAGGACGGGA
TGGTGGGAGAGGAAGTGGCGGACCCAGAGCATTCGATCCGCATCCGGGTG
GAGGGGGAGGTCGCCTGCTCCCCCATGGAGCAGCTAGCGGCGATGCGTGA
GGCGGATCAGTACAAGCTGTGGATGCCCCTCTGTCTGGAGTCCGAGCTCC
TGCACCGAGAGGGGAACGCCGATCAGGTCCTCTGGTGGTCTATGGGCATT
CCCCGGATGTTCACCTGGGACGTGCTTTTGCACGCCTGGGGCGCGGACTG
CATGCTGGAGGACGGTTCGGTGGTGATCGTGGGCGGGTCCATCCGCGCCA
GTGACCGCGTGCCTCCGGAACGTTTGCCGCTGCCCCCGGCCGGGTGGGGC
TCGTGGCGCGTCTCCCTCCACCAGTTTCGGATCCGTTTTAAGGTCGTGTC
CCCGAACACCAGCCATATCACCGCCTCTTTCATCCTCGACCCTAAGCTAC
GCGCCAAGACCCTAGTCAATTACGTCATTAAGAGAGGCGCGGCTTTGAGC
CTCAGCTTTTTGCGGAGCCACGCCGAGAAGGTCTTGAGCCTAGGGGCCGC
CCACCCGCTCTTCCCAGTCCTCCTCGCCGATCCCTTTTATCGCTCCTTCC
TGGCCCCCCGCGTCCTTTGGTACGTCCGGCAGCATCTTTCCACCACCGCG
GAGGCAGCGAGGAAGGGGGAGGATGATGGCGTACCTGCAATCCTACGACT
TTTGCATATCGACCTCGCCAAGGCCGAGGCCTGTGACCCCTACCCGCCCG
CCCGGACGACTGCTTCCACTGACCCGCCCCCGGGTCCCTCGCGGGCCTGG
GAGCCTAAGGATGACAAGGAAGGAGCGAAAGAGAAAGATAAGGGAGACGA
ATGCCTAGGGAGGGTACCCTCAATTTCTAAAGGGTTGGAGGCGCTTAAGG
GGGCCGGAGGAGGGGAAGAACTAGGCGGGGAGGAGCACGGAGTGGGCGAA
TGCGGGCCCGTCACCGCCAAGGTCCTCGGGGTCTTGGGGGCTCTGGTTGC
GGTGTATGTCTACATAGAATGTCAAGCGTGGCTATATGGATGTTGAATGT
CTCATCACGCGTCCAAATTCCCGCATCCGGCCAACACTACGGAGCAAATG
TCTGATAACATCAGAAGGAAAAAGTTTTTTTTCTTGCCCATCAGAAGGCA
TTTGCGTCGCCGCCATCCGCAGTCAGGGCATGTTACAGACATAGCCTCGC
GCAATACTGATGCATCTATATCCTCCCAGTACTCTCCACATCACCGCATC
GGCAAGCATAATCCCGAGGAACGGAGATGTAGGCAACAACGTCCAATCAC
CTCGTCTAGCCCTCCGCAGTCCTCAAGGAAGGAGGCCGACAGGAGTCCTC
TTCGTCACGGCGTCCTCATTCCGGTTGAACCCCTCAATCTGGCTGCCTCT
CTCGAGGAAGTCCTGCGCTGCTATGCGGTCGATCGCCTTATGGCGAGCGC
GGCATTGTTAAGTGCACTTGAGCAGCGCATAGGCATTGCCCTAAAGAGTG
ACGACGCGTTGGTCCGTGAGCCAGCCAAGGTGGTAAGAGGGTGCATGCAG
AAACCGGAGATGGCCAAGCGCTTGGAGGTGATCCGCCTGAGGGGTTCGCA
ATGCAAAGAGTTGACAAACGCCGCCGAGACCACCGAAGGTTGGACGCTGG
TATCGCAGCATGGGGGAACTGCAACCTATTTCCAGCCACTGGGGGTCACT
GGGAGAGGGAAGACGGAGGAGGCATCTTTACAGAGGAAGCAAGAGGTTGA
GGACGGGATGGTGGGAGAGGAAGTGGCGGACCCAGAGCATTCGATCCGCA
TCCGGGTGGAGGGGGAGGTCGCCTGCTCCCCCATGGAGCAGCTAGCGGCG
ATGCGTGAGGCGGATCAGTACAAGCTGTGGATGCCCCTCTGTCTGGAGTC
CGAGCTCCTGCACCGAGAGGGGAACGCCGATCAGGTCCTCTGGTGGTCTA
TGGGCATTCCCCGGATGTTCACCTGGGACGTGCTTTTGCACGCCTGGGGC
GCGGACTGCATGCTGGAGGACGGTTCGGTGGTGATCGTGGGCGGGTCCAT
CCGCGCCAGTGACCGCGTGCCTCCGGAACGTTTGCCGCTGCCCCCGGCCG
GGTGGGGCTCGTGGCGCGTCTCCCTCCACCAGTTTCGGATCCGTTTTAAG
GTCGTGTCCCCGAACACCAGCCATATCACCGCCTCTTTCATCCTCGACCC
TAAGCTACGCGCCAAG

Synonyms

Publications