rna6776, rna6776 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6776
Unique Name	rna6776
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1178
Alignment location	CM002469.1:477759..479675 -

Link to JBrowse

Properties


Property Name	Value
Product	choline monooxygenase
Orig transcript id	gnl\|cribi\|Naga_100113g3.9962.mrna
Orig protein id	gnl\|cribi\|Naga_100113g3.9962
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:477759..479675 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100113g3	gene6550	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6776	rna6776-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23896.1	cds6760	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:477759..479675-
coding sequence from alignment at CM002469.1:477759..479675-

mRNA sequence

>rna6776 ID=rna6776|Name=rna6776|organism=Nannochloropsis gaditana|type=mRNA|length=1178bp
AGGGAGGGAGGGAGGGAGGGATCAGGGTTTGAAGGGAGCCTGACGCGGAG
GTCTTTGGAGACGGTCTGTGCCGGGCGACAGACCCGCAAACGGAAGGGTT
TTACCTTTCTCACTACCCTTACTCGCCTACCCCCACAGGTGGTGGAGGAC
GGCTACGAGTTCTTCGCGAGGAGGCAGCTCGTCACCATCTTCTCGGCGCC
CAACTATTGTGGAGAATTCGACAATGCCGGCGCTATGATGAGCGTGGATG
AGACGCTGATGTGCTCCTTCCAGATCCTCAAGCCGGCAGAGAAGAAACAG
CGGTATGCGTACGCAGGACTGACAGGGGCCGGCATTGGTTTAGGGGCAGG
CGGGGGAGGAGGGAGGCCAGCAACACCGCCTAAGGCGCCAGGGCTGATGG
GCAATGGGAAGAAGTAACGGAGCAGGGGTAGGGGGGTTAAAGTGTCGGGG
CAGGGCTCAATCAAAAAAGATAAGGTACAGAGGTCGCGCGACGTCACGCG
AGAGAAGGATGGAATGGCCAACGAATGACATTCAGAGCCGTTGACGGCAG
ACATTGCGATATCAGCAGGAAACGCAAGGCTTCAAAGTACACACACGTCC
AAGGGCCTGTCCGTAGGAGTGGCGAAAGGAGGATAGGTTGATGAGCATCG
GAACCAGCAGAGATGGGGTCAGGACAATCACCACATCCAGCGCATCAGCG
GTGGTATTATACGACCAGCCACCCGTCCGTTATGGGCACCTTGAAGCAAT
GTGGCTGCAGAGGGAGAGCAAGAGGGGACCCTACCGAGCAGAGGGGCTGG
CGGGGCACCCGTCAGAATGTTGAATTGGGTGGTCAAGGGGGGAATCAGGG
CTGGCTTGAGGGAGGAAAAATTGGAGCAGGAGAGGGAGGAGGGGAAGGAT
GGAGGGCACTGGAGGGATGAAGAAGGACGGACGTGGAAGGGGAGGCATTA
GCGGCTGCTGGAGCCGCATCGGGAGAGGCAGCAGGGGGCAGTTTTTCGTT
ACCCATCGAGCTGCACCATGAGCAGAGCGTGCCCGTGGCGGAAAGATTGA
TACAAAGGTTCCGAGTGAAAACGATCAGACCTGCTCACGGGATCGCCACT
ATCAGTGTATAAGAGCGGGCACGGACAGAAAATGTTAACGCAGACAAAAA
TTAGGGCCACCCACCCGGCTTTCTTTCT

protein sequence of rna6776

>rna6776-protein ID=rna6776-protein|Name=rna6776|organism=Nannochloropsis gaditana|type=polypeptide|length=511bp
MPIAVTFRKHHKLLAIMKPPTVLVKARCLFRYRSPMLQLLSRTCRAGNSS
SSSLPYSTGAKASTSPFERSLFQYKDYLKRELARFDPDVPIELASTPPAS
WFTDPAFHTLEMASIFSDNPLCVGSTLQIPLPGDYFCGQVGSHPFIVLRE
ASGNVKAFYNVCRHKGMRLVAEDAGRVGQTVLTCPYHGWEYRLDGRLAKA
TRVAGIRDFAPKDYGLLEIPLWTWGPLVFLRFGQAENEAPHVVGKDGSHP
LAYLEPLLERLDAEHGFSSGLRHVRRRRYRVQCNHKVVSDNYLDNGYHVP
YAHKALGNALDLSSYGASVHDRYSVQACRGAPSTSSPSFPPSTSAFSSSS
PFPPRISPNHGGGSATRLGKAALYAHIYPGLMLNRYGPWMDLNILFPVSS
SSCDLIFDYFLEETFIAEKLEKDGEAGLRTYVEESLIASDEVQREDTYLC
ENVQAGLESGGYDRGRYAPRVEFLDHVFHQWLAQDLRAAVGKIQGREGTH
RPRWGKRGRML

mRNA from alignment at CM002469.1:477759..479675-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6776 ID=rna6776|Name=rna6776|organism=Nannochloropsis gaditana|type=mRNA|length=1917bp|location=Sequence derived from alignment at CM002469.1:477759..479675- (Nannochloropsis gaditana)
ACCGCACAGGAACGTCCTCGCTTTAAATTCCTTGGCGATCACTACTAGTG
CTTGCAGCACCTCGAAATGCAGTGCCTGCCTAGTCGCCTGCGCTTGACTG
AATATCGTCCCTTACACCCCCCATATTATGCCGATAGCAGTGACCTTCCG
CAAACATCATAAATTATTAGCCATTATGAAGCCGCCGACGGTGCTTGTTA
AGGCACGGTGTCTCTTCCGGTACCGCTCTCCGATGCTTCAACTGCTCTCA
CGGACATGTAGAGCAGGAAATTCCTCTTCCTCCTCCTTGCCTTATTCTAC
TGGCGCTAAAGCTTCGACGAGCCCTTTCGAGAGAAGTCTGTTTCAGTACA
AGGACTACTTGAAACGAGAGCTGGCAAGATTTGATCCTGATGTTCCGATC
GAGTTAGCCTCTACCCCTCCCGCCTCCTGGTTCACTGACCCGGCCTTTCA
CACCCTGGAGATGGCAAGCATTTTCTCCGATAACCCCCTGTGCGTCGGCA
GTACTCTTCAAATACCACTACCTGGCGACTATTTTTGCGGACAAGTGGGC
TCCCATCCTTTTATTGTACTGCGGGAGGCATCTGGGAATGTGAAAGCTTT
CTACAATGTCTGTCGACATAAAGGCATGCGTCTGGTGGCGGAGGACGCGG
GTCGCGTGGGGCAAACCGTTCTCACCTGTCCGTATCACGGATGGGAATAT
CGCTTGGACGGACGACTGGCCAAGGCGACGCGTGTGGCAGGCATACGTGA
CTTTGCCCCTAAGGACTACGGGCTCCTGGAGATTCCTCTCTGGACGTGGG
GGCCTCTGGTCTTCCTCCGCTTCGGGCAGGCTGAAAACGAGGCACCTCAC
GTGGTTGGGAAGGACGGAAGTCACCCCCTGGCGTACTTGGAGCCCCTGCT
AGAACGCCTGGATGCCGAGCACGGTTTCAGCTCAGGATTGCGGCATGTCC
GCCGACGGCGATACCGAGTCCAGGTAGGATTTTGTGGGCTGATCCCATAT
TGTACGGTACTCTCTACCTATCTCTCGAGTACGCTTGTACAGTTCCGGCC
GTGCCGTGCCCCTTCACTCACCTCCCTGCCCTCACACCCTCCCTCTCCCT
CCTCGCGTTCCCTCTTCCGACCCCCTTCGACACCCCAGTGCAACCACAAG
GTGGTAAGCGACAACTATTTGGACAACGGCTATCACGTTCCCTACGCGCA
CAAAGCCCTGGGGAATGCCCTTGACCTCTCCTCTTATGGAGCTTCCGTTC
ACGACCGATACTCCGTCCAGGCCTGTCGCGGAGCGCCCTCCACCTCCTCC
CCCTCCTTCCCCCCTTCCACGTCCGCCTTTTCCTCGTCTTCTCCCTTTCC
TCCTCGTATCAGCCCCAATCATGGAGGGGGAAGTGCAACGCGCCTGGGTA
AGGCCGCCCTTTACGCACACATTTACCCTGGGCTCATGCTCAACCGCTAC
GGCCCATGGATGGACCTGAACATCCTCTTTCCCGTCTCCTCCTCCTCCTG
CGACCTCATTTTCGATTACTTCCTGGAAGAAACTTTCATTGCCGAAAAGT
TGGAAAAGGACGGGGAGGCTGGCTTGCGCACGTACGTGGAAGAGTCCCTG
ATAGCCTCGGACGAGGTACAGCGAGAGGACACCTACCTGTGCGAGAATGT
TCAGGCGGGGCTTGAATCGGGCGGGTATGACAGGGGAAGGTATGCGCCGA
GAGTGGAGTTTTTGGATCACGTTTTTCATCAATGGCTGGCGCAGGACCTG
CGGGCGGCAGTAGGGAAGATACAGGGCAGGGAGGGGACACATAGGCCGAG
GTGGGGGAAAAGAGGGAGAATGCTGTGAAGCGCCAAAAAGCGTGGTATTT
GTAAGATGACAGCAAAATAAAAACCACTTTAGGCAAACATCCATGAAGGA
CAGCCGAGAAAGAAAGC

Coding sequence (CDS) from alignment at CM002469.1:477759..479675-

>rna6776 ID=rna6776|Name=rna6776|organism=Nannochloropsis gaditana|type=CDS|length=3072bp|location=Sequence derived from alignment at CM002469.1:477759..479675- (Nannochloropsis gaditana)
TGCAACCACAAGGTGGTAAGCGACAACTATTTGGACAACGGCTATCACGT
TCCCTACGCGCACAAAGCCCTGGGGAATGCCCTTGACCTCTCCTCTTATG
GAGCTTCCGTTCACGACCGATACTCCGTCCAGGCCTGTCGCGGAGCGCCC
TCCACCTCCTCCCCCTCCTTCCCCCCTTCCACGTCCGCCTTTTCCTCGTC
TTCTCCCTTTCCTCCTCGTATCAGCCCCAATCATGGAGGGGGAAGTGCAA
CGCGCCTGGGTAAGGCCGCCCTTTACGCACACATTTACCCTGGGCTCATG
CTCAACCGCTACGGCCCATGGATGGACCTGAACATCCTCTTTCCCGTCTC
CTCCTCCTCCTGCGACCTCATTTTCGATTACTTCCTGGAAGAAACTTTCA
TTGCCGAAAAGTTGGAAAAGGACGGGGAGGCTGGCTTGCGCACGTACGTG
GAAGAGTCCCTGATAGCCTCGGACGAGGTACAGCGAGAGGACACCTACCT
GTGCGAGAATGTTCAGGCGGGGCTTGAATCGGGCGGGTATGACAGGGGAA
GGTATGCGCCGAGAGTGGAGTTTTTGGATCACGTTTTTCATCAATGGCTG
GCGCAGGACCTGCGGGCGGCAGTAGGGAAGATACAGGGCAGGGAGGGGAC
ACATAGGCCGAGGTGGGGGAAAAGAGGGAGAATGCTGTGAATGCCGATAG
CAGTGACCTTCCGCAAACATCATAAATTATTAGCCATTATGAAGCCGCCG
ACGGTGCTTGTTAAGGCACGGTGTCTCTTCCGGTACCGCTCTCCGATGCT
TCAACTGCTCTCACGGACATGTAGAGCAGGAAATTCCTCTTCCTCCTCCT
TGCCTTATTCTACTGGCGCTAAAGCTTCGACGAGCCCTTTCGAGAGAAGT
CTGTTTCAGTACAAGGACTACTTGAAACGAGAGCTGGCAAGATTTGATCC
TGATGTTCCGATCGAGTTAGCCTCTACCCCTCCCGCCTCCTGGTTCACTG
ACCCGGCCTTTCACACCCTGGAGATGGCAAGCATTTTCTCCGATAACCCC
CTGTGCGTCGGCAGTACTCTTCAAATACCACTACCTGGCGACTATTTTTG
CGGACAAGTGGGCTCCCATCCTTTTATTGTACTGCGGGAGGCATCTGGGA
ATGTGAAAGCTTTCTACAATGTCTGTCGACATAAAGGCATGCGTCTGGTG
GCGGAGGACGCGGGTCGCGTGGGGCAAACCGTTCTCACCTGTCCGTATCA
CGGATGGGAATATCGCTTGGACGGACGACTGGCCAAGGCGACGCGTGTGG
CAGGCATACGTGACTTTGCCCCTAAGGACTACGGGCTCCTGGAGATTCCT
CTCTGGACGTGGGGGCCTCTGGTCTTCCTCCGCTTCGGGCAGGCTGAAAA
CGAGGCACCTCACGTGGTTGGGAAGGACGGAAGTCACCCCCTGGCGTACT
TGGAGCCCCTGCTAGAACGCCTGGATGCCGAGCACGGTTTCAGCTCAGGA
TTGCGGCATGTCCGCCGACGGCGATACCGAGTCCAGTGCAACCACAAGGT
GGTAAGCGACAACTATTTGGACAACGGCTATCACGTTCCCTACGCGCACA
AAGCCCTGGGGAATGCCCTTGACCTCTCCTCTTATGGAGCTTCCGTTCAC
GACCGATACTCCGTCCAGGCCTGTCGCGGAGCGCCCTCCACCTCCTCCCC
CTCCTTCCCCCCTTCCACGTCCGCCTTTTCCTCGTCTTCTCCCTTTCCTC
CTCGTATCAGCCCCAATCATGGAGGGGGAAGTGCAACGCGCCTGGGTAAG
GCCGCCCTTTACGCACACATTTACCCTGGGCTCATGCTCAACCGCTACGG
CCCATGGATGGACCTGAACATCCTCTTTCCCGTCTCCTCCTCCTCCTGCG
ACCTCATTTTCGATTACTTCCTGGAAGAAACTTTCATTGCCGAAAAGTTG
GAAAAGGACGGGGAGGCTGGCTTGCGCACGTACGTGGAAGAGTCCCTGAT
AGCCTCGGACGAGGTACAGCGAGAGGACACCTACCTGTGCGAGAATGTTC
AGGCGGGGCTTGAATCGGGCGGGTATGACAGGGGAAGGTATGCGCCGAGA
GTGGAGTTTTTGGATCACGTTTTTCATCAATGGCTGGCGCAGGACCTGCG
GGCGGCAGTAGGGAAGATACAGGGCAGGGAGGGGACACATAGGCCGAGGT
GGGGGAAAAGAGGGAGAATGCTGTGAATGCCGATAGCAGTGACCTTCCGC
AAACATCATAAATTATTAGCCATTATGAAGCCGCCGACGGTGCTTGTTAA
GGCACGGTGTCTCTTCCGGTACCGCTCTCCGATGCTTCAACTGCTCTCAC
GGACATGTAGAGCAGGAAATTCCTCTTCCTCCTCCTTGCCTTATTCTACT
GGCGCTAAAGCTTCGACGAGCCCTTTCGAGAGAAGTCTGTTTCAGTACAA
GGACTACTTGAAACGAGAGCTGGCAAGATTTGATCCTGATGTTCCGATCG
AGTTAGCCTCTACCCCTCCCGCCTCCTGGTTCACTGACCCGGCCTTTCAC
ACCCTGGAGATGGCAAGCATTTTCTCCGATAACCCCCTGTGCGTCGGCAG
TACTCTTCAAATACCACTACCTGGCGACTATTTTTGCGGACAAGTGGGCT
CCCATCCTTTTATTGTACTGCGGGAGGCATCTGGGAATGTGAAAGCTTTC
TACAATGTCTGTCGACATAAAGGCATGCGTCTGGTGGCGGAGGACGCGGG
TCGCGTGGGGCAAACCGTTCTCACCTGTCCGTATCACGGATGGGAATATC
GCTTGGACGGACGACTGGCCAAGGCGACGCGTGTGGCAGGCATACGTGAC
TTTGCCCCTAAGGACTACGGGCTCCTGGAGATTCCTCTCTGGACGTGGGG
GCCTCTGGTCTTCCTCCGCTTCGGGCAGGCTGAAAACGAGGCACCTCACG
TGGTTGGGAAGGACGGAAGTCACCCCCTGGCGTACTTGGAGCCCCTGCTA
GAACGCCTGGATGCCGAGCACGGTTTCAGCTCAGGATTGCGGCATGTCCG
CCGACGGCGATACCGAGTCCAG

Synonyms

Publications