rna6775, rna6775 (mRNA) Nannochloropsis gaditana

Overview
Namerna6775
Unique Namerna6775
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length870
Alignment locationCM002469.1:476380..477769 +

Link to JBrowse

Properties
Property NameValue
Productserine threonine-protein phosphatase pp1
Orig transcript idgnl|cribi|Naga_100113g1.9960.mrna
Orig protein idgnl|cribi|Naga_100113g1.9960
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:476380..477769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100113g1gene6549Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6775rna6775-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23894.1cds6759Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6775 ID=rna6775|Name=rna6775|organism=Nannochloropsis gaditana|type=mRNA|length=870bp
ATGGTGAATGGCACGTTTTGGGCATGTGCCTTGCCAGGCCAGAGGCATCC
TCGTATTCTCGGTGCCGCCTCCGAGTCTTTCGAGGCTGAGCGCGCGAGAA
CCCCACGCGTTCGGGCTGGTGCTGCTACAGCCTGCTGCCCCGCTTTCCAT
CCAAGATATCCGACTCTAATGTCAACAGCTACAACAAATGCAGCAGGAGG
AAGTGTAGAAGGGATGTCTGAAGTGGATGGTATCATTGAAAAACTCCTTA
CCGTCCGTGGGGCCAGGCCCGGGAAACCCGTGCAGCTCCTGGAGTCGGAG
ATCCGCATGTTGTGTAATAAATCGAAGGACGTGTTTATGGAGCAATCGAT
GCTTTTGGAGCTAGAGGCACCCATTAAGATTTGCGGCGATATTCACGGGC
AGTACTATGATTTGTTGCGGCTGTTCGAGTATGGCGGATTTCCTCCCAAT
GCCAACTACTTGTTCCTAGGTGACTATGTGGACCGTGGGAAGCAGTCTTT
GGAAACAATCTGTCTTCTCCTCGCCTACAAAATCAAGTATCCGGAGAACT
TCTTCATTCTCCGCGGAAACCACGAGTGCGCCTCTATCAACCGGATCTAC
GGCTTCTACGACGAATGCAAACGCCGATACAACATCAAGCTATGGAAGAC
ATTCACGGACTGCTTCAACTGCCTCCCCATCGCCGCCGTCATCGATGAGA
AGATCTTTTGCATGCACGGGGGCCTCTCCCCGGAGCTTACCTCGTTGGAG
GAGATTAAGGATATAATGCGGCCCACGGACGTGCCAGACACGGGGCTGCT
CTGCGACTTGCTGTGGGCGGACCCCGACAAAGACATCATGGGTTGGGGAG
ACAATGACCCACGACCTTGA
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protein sequence of rna6775

>rna6775-protein ID=rna6775-protein|Name=rna6775|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
REGGREGSGFEGSLTRRSLETVCAGRQTRKRKGFTFLTTLTRLPPQVVED
GYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQ
RYAYAGLTGAGIGLGAGGGGGRPATPPKAPGLMGNGKK
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mRNA from alignment at CM002469.1:476380..477769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6775 ID=rna6775|Name=rna6775|organism=Nannochloropsis gaditana|type=mRNA|length=1390bp|location=Sequence derived from alignment at CM002469.1:476380..477769+ (Nannochloropsis gaditana)
agggagggagggagggagggatcagggTTTGAAGGGAGCCTGACGCGGAG
GTCTTTGGAGACGGTCTGTGCCGGGCGACAGACCCGCAAACGGAAGGGTT
TTACCTTTCTCACTACCCTTACTCGCCTACCCCcacaggtggtggaggac
ggctaCGAGTTCTTCGCGAGGAGGCAGCTCGTCACCATCTTCTCGGCGGT
AAGCCCCATATCGTCTTAATCATTCATTTCTCGTCTCgccatccctttcc
tttcttccccgttCCCTTCTCGTGCCCCCCTCCACAATGCGGGTGTTCCC
TACCGCGGCCGGTCTGTCGCCTCCTCGCGGGCGTCAGATCGTCCTCGGAT
CGGGCCACCCTCACTCACCTTGACACCCGTCCAACacgtctctttccccc
caccccgtAGCCCAACTATTGTGGAGAATTCGACAATGCCGGCGCTATGA
TGAGCGTGGATGAGACGCTGATGTGCTCCTTCCAGATCCTCAAGCCGGCA
GAGAAGAAACAGCGGTATGCGTACGCAGGACTGACAGGGGCCGGCATTGG
TTtaggggcaggcgggggaggagggaggccagcaaCACCGCCTAAGGCGC
CAGGGCTGATGGGCAATGGGAAGAAGTAACGGAGCAGGGGTAGGGGGGTT
AAAGTGTCGGGGCAGGGCTCAATCAAAAAAGATAAGGTACAGAGGTCGCG
CGACGTCACGCGAGAGAAGGATGGAATGGCCAACGAATGACATTCAGAGC
CGTTGACGGCAGACATTGCGATATCAGCAGGAAACGCAAGGCTTCAAAGT
ACACACACGTCCAAGGGCCTGTCCGTAGGAGTGGCGAAAGGAGGATAGGT
TGATGAGCATCGGAACCAGCAGAGATGGGGTCAGGACAATCACCACATCC
AGCGCATCAGCGGTGGTATTATACGACCAGCCACCCGTCCGTTATGGGCA
CCTTGAAGCAATGTGGCtgcagagggagagcaagaggggACCCTACCGAG
CagaggggctggcggggcACCCGTCAGAATGTTGAATTGGGTGGTCAAGG
GGGGAATCAGGGCtggcttgagggaggaaaaattggagcaggagagggag
gaggggaaggatggagggcactggagggatgaagaaggacggacgtggaa
ggggaggcattAGCGGCTGCTGGAGCCGCATCGGGAGAGGCAGCAGGGGG
CAGTTTTTCGTTACCCATCGAGCTGCACCATGAGCAGAGCGTGCCCGTGG
CGGAAAGATTGATACAAAGGTTCCGAGTGAAAACGATCAGACCTGCTCAC
GGGATCGCCACTATCAGTGTATAAGAGCGGGCACGGACAGAAAATGTTAA
CGCAGACAAAAATTAGGGCCACCCACCCGGCTTTCTTTCT
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Coding sequence (CDS) from alignment at CM002469.1:476380..477769+

>rna6775 ID=rna6775|Name=rna6775|organism=Nannochloropsis gaditana|type=CDS|length=834bp|location=Sequence derived from alignment at CM002469.1:476380..477769+ (Nannochloropsis gaditana)
agggagggagggagggagggatcagggTTTGAAGGGAGCCTGACGCGGAG
GTCTTTGGAGACGGTCTGTGCCGGGCGACAGACCCGCAAACGGAAGGGTT
TTACCTTTCTCACTACCCTTACTCGCCTACCCCcacaggtggtggaggac
ggctaCGAGTTCTTCGCGAGGAGGCAGCTCGTCACCATCTTCTCGGCGCC
CAACTATTGTGGAGAATTCGACAATGCCGGCGCTATGATGAGCGTGGATG
AGACGCTGATGTGCTCCTTCCAGATCCTCAAGCCGGCAGAGAAGAAACAG
CGGTATGCGTACGCAGGACTGACAGGGGCCGGCATTGGTTtaggggcagg
cgggggaggagggaggccagcaaCACCGCCTAAGGCGCCAGGGCTGATGG
GCAATGGGAAGAAGTAAagggagggagggagggagggatcagggTTTGAA
GGGAGCCTGACGCGGAGGTCTTTGGAGACGGTCTGTGCCGGGCGACAGAC
CCGCAAACGGAAGGGTTTTACCTTTCTCACTACCCTTACTCGCCTACCCC
cacaggtggtggaggacggctaCGAGTTCTTCGCGAGGAGGCAGCTCGTC
ACCATCTTCTCGGCGCCCAACTATTGTGGAGAATTCGACAATGCCGGCGC
TATGATGAGCGTGGATGAGACGCTGATGTGCTCCTTCCAGATCCTCAAGC
CGGCAGAGAAGAAACAGCGGTATGCGTACGCAGGACTGACAGGGGCCGGC
ATTGGTTtaggggcaggcgggggaggagggaggccagcaaCACCGCCTAA
GGCGCCAGGGCTGATGGGCAATGGGAAGAAGTAA
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Synonyms
Publications