EWM23894.1, cds6759 (CDS) Nannochloropsis gaditana

Overview
NameEWM23894.1
Unique Namecds6759
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:476380..476577 +
Alignment locationCM002469.1:476790..477008 +

Link to JBrowse

Properties
Property NameValue
Start range476380
Start range.
Protein idEWM23894.1
Productserine threonine-protein phosphatase pp1
Partialtrue
Orig transcript idgnl|cribi|Naga_100113g1.9960.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:476380..476577 +
CM002469.1supercontigCM002469.1:476790..477008 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR029052Metallo-depent_PP-like
IPR006186Ser/Thr-sp_prot-phosphatase
Homology
BLAST of EWM23894.1 vs. NCBI_GenBank
Match: gi|585105176|gb|EWM23894.1| (serine threonine-protein phosphatase pp1, partial [Nannochloropsis gaditana])

HSP 1 Score: 277.715 bits (709), Expect = 1.737e-94
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query:    1 REGGREGSGFEGSLTRRSLETVCAGRQTRKRKGFTFLTTLTRLPPQVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGAGGGGGRPATPPKAPGLMGNGKK 138
            REGGREGSGFEGSLTRRSLETVCAGRQTRKRKGFTFLTTLTRLPPQVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGAGGGGGRPATPPKAPGLMGNGKK
Sbjct:    1 REGGREGSGFEGSLTRRSLETVCAGRQTRKRKGFTFLTTLTRLPPQVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGAGGGGGRPATPPKAPGLMGNGKK 138          
BLAST of EWM23894.1 vs. NCBI_GenBank
Match: gi|553184953|ref|XP_005854177.1| (protein phosphatase 1, catalytic subunit, partial [Nannochloropsis gaditana CCMP526] >gi|422294888|gb|EKU22188.1| protein phosphatase 1, catalytic subunit, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 192.971 bits (489), Expect = 1.291e-57
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
Query:   46 QVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGAGGGGGRPATPPKAPGLMGNGKK 138
            QVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGAGGGGGRPATPPKAPGLMGNGKK
Sbjct:  307 QVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGAGGGGGRPATPPKAPGLMGNGKK 399          
BLAST of EWM23894.1 vs. NCBI_GenBank
Match: gi|1048062084|ref|XP_017463069.1| (PREDICTED: serine/threonine-protein phosphatase PP1-beta catalytic subunit-like, partial [Rhagoletis zephyria])

HSP 1 Score: 132.88 bits (333), Expect = 3.955e-37
Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 0
Query:   46 QVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGAGGGGGRPATPPKAPGL 132
            QVVEDGYEFFA+RQLVT+FSAPNYCGEFDNAG MMSVDETLMCSFQILKP+EKK +Y Y GL             GRP TPP+AP +
Sbjct:   74 QVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAKYQYGGL-----------NSGRPVTPPRAPAI 149          
BLAST of EWM23894.1 vs. NCBI_GenBank
Match: gi|813172789|ref|XP_012204847.1| (serine/threonine-protein phosphatase PP1 [Saprolegnia parasitica CBS 223.65] >gi|641530284|gb|KDO24417.1| serine/threonine-protein phosphatase PP1 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 136.346 bits (342), Expect = 1.503e-36
Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = 0
Query:   46 QVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGAGGGGGRPATPPK 128
            QVVEDGYEFFA+RQLVT+FSAPNYCGEFDNAGAMMSVDE+LMCSFQILKPAEKKQR+AY G+ GA        G  RPATPP+
Sbjct:  241 QVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDESLMCSFQILKPAEKKQRFAYQGMGGA--------GAQRPATPPR 315          
BLAST of EWM23894.1 vs. NCBI_GenBank
Match: gi|669150800|ref|XP_008610962.1| (serine/threonine-protein phosphatase PP1 [Saprolegnia diclina VS20] >gi|530737403|gb|EQC35645.1| serine/threonine-protein phosphatase PP1 [Saprolegnia diclina VS20])

HSP 1 Score: 136.346 bits (342), Expect = 1.989e-36
Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = 0
Query:   46 QVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGAGGGGGRPATPPK 128
            QVVEDGYEFFA+RQLVT+FSAPNYCGEFDNAGAMMSVDE+LMCSFQILKPAEKKQR+AY G+ GA        G  RPATPP+
Sbjct:  264 QVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDESLMCSFQILKPAEKKQRFAYQGMGGA--------GAQRPATPPR 338          
BLAST of EWM23894.1 vs. NCBI_GenBank
Match: gi|1028534691|gb|OAJ07837.1| (Serine/threonine-protein phosphatase PP1 [Tilletia indica] >gi|1028547757|gb|OAJ18229.1| Serine/threonine-protein phosphatase PP1 [Tilletia walkeri] >gi|1028556741|gb|OAJ26636.1| Serine/threonine-protein phosphatase PP1 [Tilletia caries] >gi|1028559930|gb|OAJ29424.1| Serine/threonine-protein phosphatase PP1 [Tilletia controversa])

HSP 1 Score: 136.346 bits (342), Expect = 2.149e-36
Identity = 64/85 (75.29%), Postives = 70/85 (82.35%), Query Frame = 0
Query:   46 QVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGAGGGGGRPATPPKAP 130
            QVVEDGYEFFA+RQLVT+FSAPNYCGEFDNAGAMMSVDETL+CSFQILKPAEKKQ+YAYAG+             GRP TPP+ P
Sbjct:  251 QVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLLCSFQILKPAEKKQKYAYAGI-----------NMGRPVTPPRKP 324          
BLAST of EWM23894.1 vs. NCBI_GenBank
Match: gi|1173927022|gb|OQR81109.1| (serine/threonine-protein phosphatase PP1-gamma catalytic subunit [Achlya hypogyna])

HSP 1 Score: 135.961 bits (341), Expect = 2.266e-36
Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = 0
Query:   46 QVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGAGGGGGRPATPPK 128
            QVVEDGYEFFA+RQLVT+FSAPNYCGEFDNAGAMMSVDE+LMCSFQILKPAEKKQR+AY G+ GA        G  RPATPP+
Sbjct:  250 QVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDESLMCSFQILKPAEKKQRFAYQGMGGA--------GAQRPATPPR 324          
BLAST of EWM23894.1 vs. NCBI_GenBank
Match: gi|298713802|emb|CBJ27174.1| (phosphatase PP1 [Ectocarpus siliculosus])

HSP 1 Score: 136.346 bits (342), Expect = 2.681e-36
Identity = 64/85 (75.29%), Postives = 70/85 (82.35%), Query Frame = 0
Query:   46 QVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGAGGGGGRPATPPKAP 130
            QVVEDGYEFFARR LVT+FSAPNYCGEFDNAGAMMSVD+TLMCSFQILKPAEK+QR+ YAG+   G   G   G  RP TPP+ P
Sbjct:  251 QVVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQILKPAEKRQRFNYAGVNQQG---GGAPGTSRPVTPPRGP 332          
BLAST of EWM23894.1 vs. NCBI_GenBank
Match: gi|301115380|ref|XP_002905419.1| (serine/threonine-protein phosphatase PP1-gamma catalytic subunit [Phytophthora infestans T30-4] >gi|675172941|ref|XP_008895355.1| serine/threonine-protein phosphatase PP1-beta catalytic subunit [Phytophthora parasitica INRA-310] >gi|695463418|ref|XP_009538713.1| hypothetical protein PHYSODRAFT_356184 [Phytophthora sojae] >gi|262110208|gb|EEY68260.1| serine/threonine-protein phosphatase PP1-gamma catalytic subunit [Phytophthora infestans T30-4] >gi|348666024|gb|EGZ05852.1| hypothetical protein PHYSODRAFT_356184 [Phytophthora sojae] >gi|566015591|gb|ETI38502.1| serine/threonine-protein phosphatase PP1-beta catalytic subunit [Phytophthora parasitica P1569] >gi|567953058|gb|ETK78718.1| serine/threonine-protein phosphatase PP1-beta catalytic subunit [Phytophthora parasitica] >gi|567981713|gb|ETL32149.1| serine/threonine-protein phosphatase PP1-beta catalytic subunit [Phytophthora parasitica] >gi|568011214|gb|ETL85392.1| serine/threonine-protein phosphatase PP1-beta catalytic subunit [Phytophthora parasitica] >gi|568041122|gb|ETM38546.1| serine/threonine-protein phosphatase PP1-beta catalytic subunit [Phytophthora parasitica] >gi|568104874|gb|ETN19519.1| serine/threonine-protein phosphatase PP1-beta catalytic subunit [Phytophthora parasitica INRA-310] >gi|570319333|gb|ETO67281.1| serine/threonine-protein phosphatase PP1-beta catalytic subunit [Phytophthora parasitica P1976] >gi|570943153|gb|ETP08410.1| serine/threonine-protein phosphatase PP1-beta catalytic subunit [Phytophthora parasitica CJ01A1] >gi|570973974|gb|ETP36467.1| serine/threonine-protein phosphatase PP1-beta catalytic subunit [Phytophthora parasitica P10297] >gi|970640694|gb|KUF83124.1| Serine/threonine-protein phosphatase [Phytophthora nicotianae] >gi|1214710847|gb|OWZ21900.1| Serine/threonine-protein phosphatase [Phytophthora megakarya])

HSP 1 Score: 135.576 bits (340), Expect = 3.293e-36
Identity = 66/83 (79.52%), Postives = 69/83 (83.13%), Query Frame = 0
Query:   46 QVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGAGGGGGRPATPPK 128
            QVVEDGYEFFA+RQLVT+FSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAY GL           G  RPATPP+
Sbjct:  251 QVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYNGL-----------GTQRPATPPR 322          
BLAST of EWM23894.1 vs. NCBI_GenBank
Match: gi|134054929|emb|CAK36941.1| (unnamed protein product, partial [Aspergillus niger])

HSP 1 Score: 129.413 bits (324), Expect = 5.966e-36
Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 0
Query:   46 QVVEDGYEFFARRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKQRYAYAGLTGAGIGLGAGGGGGRPATPPK 128
            QVVEDGYEFF++RQLVT+FSAPNYCGEFDNAGAMMSVDE+L+CSFQILKPAEKKQ+Y Y G++            GRP TPP+
Sbjct:   55 QVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGAMMSVDESLLCSFQILKPAEKKQKYVYGGMS-----------SGRPITPPR 126          
The following BLAST results are available for this feature:
BLAST of EWM23894.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105176|gb|EWM23894.1|1.737e-94100.00serine threonine-protein phosphatase pp1, partial ... [more]
gi|553184953|ref|XP_005854177.1|1.291e-57100.00protein phosphatase 1, catalytic subunit, partial ... [more]
gi|1048062084|ref|XP_017463069.1|3.955e-3771.26PREDICTED: serine/threonine-protein phosphatase PP... [more]
gi|813172789|ref|XP_012204847.1|1.503e-3678.31serine/threonine-protein phosphatase PP1 [Saproleg... [more]
gi|669150800|ref|XP_008610962.1|1.989e-3678.31serine/threonine-protein phosphatase PP1 [Saproleg... [more]
gi|1028534691|gb|OAJ07837.1|2.149e-3675.29Serine/threonine-protein phosphatase PP1 [Tilletia... [more]
gi|1173927022|gb|OQR81109.1|2.266e-3678.31serine/threonine-protein phosphatase PP1-gamma cat... [more]
gi|298713802|emb|CBJ27174.1|2.681e-3675.29phosphatase PP1 [Ectocarpus siliculosus][more]
gi|301115380|ref|XP_002905419.1|3.293e-3679.52serine/threonine-protein phosphatase PP1-gamma cat... [more]
gi|134054929|emb|CAK36941.1|5.966e-3671.08unnamed protein product, partial [Aspergillus nige... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6775rna6775Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications