rna6773, rna6773 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6773
Unique Name	rna6773
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2010
Alignment location	CM002469.1:466307..468563 -

Link to JBrowse

Properties


Property Name	Value
Product	ubiquitin-protein ligase
Orig transcript id	gnl\|cribi\|Naga_100082g1.9353.mrna
Orig protein id	gnl\|cribi\|Naga_100082g1.9353
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:466307..468563 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100082g1	gene6547	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23921.1	cds6757	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6773	rna6773-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:466307..468563-
coding sequence from alignment at CM002469.1:466307..468563-

mRNA sequence

>rna6773 ID=rna6773|Name=rna6773|organism=Nannochloropsis gaditana|type=mRNA|length=2010bp
GTACGCGTTCGCCCCAAGCGTCTGGATGCTGAAGCAAGATGTCACCCCTT
TTCATCAGGTCGCTTATACAGCTCAGTGCAAAGACGTTACATTCGCCTCA
CACAGTTTCGTGCGAAGATCTCCCCCCCCCATTATCTTCGCTTTGCGCAC
CGCATGTAAGCCTCTGTCATCGGACATTCCACAGCTCTGCCACGGGGCGG
CAGCGAAGCAAGGGAATCAGCAGAGGTCGGGTCGTCTTGGAAGCTTCTTC
TACGTTCCTCTCTCGCTTTGGCAACTGGCGTTCCCCTATTATAAATGGGA
GGTCTACATCACGCTGTGGTTGCCATCACAGGCATATGCGCGGGAATGGC
AGTTTTGCTTTCGGCAGCTCTGATACAGCAACACCTCACTCATTTCTCCA
AGCCCCTGGTGCAGAGTAAAATCGTGGGCATTCTGTGGATGGTTCCCATC
TACAGTGTGCAGAGCTGGCTGTCGCTATCGTTTAAGCGGTACGCTCTTTA
TTTGGACATGTTTCGGGATTGCTACGAAGCCTACGTCCTGTACCTGTTTC
TGGCGTTACTTGTTGCCTACTTGGGGGACGGGGAGGAAGAACGGGTAGTT
GCACTCCTCCAACACCAGCCCCGCGTGAAGCACATCATGCCCTTCAAGTT
ATGCCTCGGTGGGGGCGAAGTGCCACATGGCGCGGACTTCTTAAGGTTTT
GCAAGTTCGGGACCATGCAGTATATTGTGCTGAAGCCGGCGTGCACGCTG
GCAGCTGTCATCCTGGCCGCCTGCGGATTGTACGGAGAGGGCTCCTTTGC
TCTGAACCGATTCTGGATATATCAAACTCTTATCATGAACGTGTCGGTCG
GGTACGCCTTTTACTGCTTGGGTCTCTTTTATGTGCTTCTGCACGGGCCC
CTGGAGGCTCACAACCCGGTGCCCAAGTTCCTTTGCATCAAAGCCGTCCT
CTTCCTCTCCTTCTGGCAGGGCGTCGTCATAGCCGCCCTCGTCCGCCTGG
GCCTGCTTCCTCATTTCGGAGAATGGACGACCCAGAACGTGGCTATGGCC
GTCCAGGAGGTGCTGATTTGCGTTGAGATGATGCTTGTGGCCTTCGCCCA
CCAATACGCCTTCCCCGTGGCCGAGTACGTCGGTGCTCCCGCCATGCGCA
CGGGCCTCCTCTCGGATCACTTCTCCCACACCACAGCGCTAAGGGACTTC
AACGAGGTCATGCCTGTCCTTCTGCCGTCCAACTTCACCCCCGGCCTCGC
CCAGAGCATCGATCGCCGCGGTGAGATAGGGCTAGCAGGCGGCTGGGAGA
CGGGCGACGGAAATAGATCTTGTCCTTCGCAACCTGCCTTGCACAAAGAA
GTCACGGAGTTCTCCTCACGACCTGGACAGCGAAGGTCTCGACAAAGCAG
CAGTCAAGACCTGGGGGCGGACTTCGCGAATGGAAGTAAAGGAGGGGCAA
CAGGGGAGGAACTCGAGTCAGCCCCAGCGCGAAAGCTTGGCGTATTTTAT
GGATTTGAAGCCCTTGGGCCGCATCGAGACTTAAATAGCGGGTCCTACTC
CATACCCGGATCTTCTTCAGCCACCACGCTGTCCTCACCTAAGAACAATC
CACGTGCACCAGCAGATGCTGGCGTTGGAGGGGGCAAGCACGAAAGTTTT
GGCGGTGAAGGCCCGTGCCTGCCAGAAGAGGATAGGCCCATGCTAAGCAA
AGGCGAGGCATTGGCTTTAAATACCTTTCCCTGGCGCTTAAATGGATGAA
CAATCTTCATGTGACCTGCGTTCGTTCATCAGAGAGGGGCGCGCATATCG
ATCGAAAAGGGGCTTCCAACCGGCTAAAGAGTCTGAGCGTCTTTTGCACA
TATTGAAAATGAATGAACGTATACAAACAAAAGTAACAAACAGCGTCGTG
ACCAAGGGTGTACTTGATAGCGTCCTTCATGCTCTTGTCAGCGATATTCT
TTGGTGCAAGACTCTTACAACATCAGATGCCGCCCAAGATAATCAAGAAG
GAACCGCGCC

protein sequence of rna6773

>rna6773-protein ID=rna6773-protein|Name=rna6773|organism=Nannochloropsis gaditana|type=polypeptide|length=609bp
HMVSLLMPPMASPLARSQEEIKDTLGDADPASHVLAHAAARELVSSGGVR
EECWVIKPLSERMAQELQDPVALATQQLPGWCDQLLRYGPFLLQFRVRKE
YFHLSSFGLGRAVHRLLQQQRQGMDGQGGGGGGGGEGGGTGRHASHGHSH
QGSHHHHHHHQYRRAPTSAVQQLKVQVSRRKLLASAEKVLEEHGSRRVLL
ETEFFNEPGTGSGPTAEFFSLVSKEMRSPNLGLWRGESHHDGLYPQPWSD
PTGGSEERMKDQKGGGGRPEGGRGQKLRQFACLGRLIGQALLDERLLDIR
FAAPLVATLAGRQASQSLPAALEEMERVDSALARQLQALAASTGLAQWFE
APESGQRSERQEQEVGPGKIVRESADADERVSALCLTFCLPGEPEIGLLG
PSGVPVKPGVEGLRSDGGLGEDVTRQNLGLYVQRVLQVGLREAVRPQVTA
MLTGLQDIVPTGALWVFTEEEIMAMVGGVGSEMGKDPEEILEALACDHGY
TRGSQAVRWLVEILAEMTLEEERHFLMFVTGSPGLPVGGLMGCCPRLTVV
KKVAEGHARALGQAGVDAMLPSASTCTNYLKLPDYSSRAVMRERLLLSLR
HGQHSFHLS

mRNA from alignment at CM002469.1:466307..468563-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6773 ID=rna6773|Name=rna6773|organism=Nannochloropsis gaditana|type=mRNA|length=2257bp|location=Sequence derived from alignment at CM002469.1:466307..468563- (Nannochloropsis gaditana)
GGCACATGGTTTCCCTTTTAATGCCGCCCATGGCCTCCCCCTTGGCGCGT
TCCCAAGAGGAGATCAAGGATACCCTGGGCGACGCGGACCCTGCGTCCCA
CGTCCTTGCCCACGCTGCGGCTCGGGAGCTAGTCTCTAGCGGAGGTGTCC
GGGAGGAGTGCTGGGTGATCAAGCCGCTCAGCGAGCGCATGGCACAAGAG
CTGCAGGACCCCGTTGCACTCGCAACCCAGCAATTGCCAGGGTGGTGCGA
CCAGCTCTTGCGGTATGGCCCATTTTTGCTGCAATTTCGCGTCCGGAAAG
AGTACTTTCACCTATCCAGTTTCGGGCTGGGTCGTGCTGTACACCGTCTT
CTGCAACAGCAACGACAAGGGATGGATGGGCAAGGGGGAGGGGGAGGCGG
GGGAGGGGAAGGGGGGGGGACAGGGCGGCATGCTTCCCACGGTCATTCAC
ACCAGGGAAGCCACCACCACCACCATCATCATCAGTATCGTCGCGCCCCC
ACCTCTGCCGTGCAGCAGCTCAAGGTACAGGTGTCGCGCCGGAAGCTCCT
GGCCTCGGCGGAGAAAGTCTTGGAGGAACACGGGTCCCGGCGGGTCTTGC
TGGAAACCGAGTTCTTCAACGAGCCTGGCACGGGCTCCGGCCCGACGGCC
GAGTTCTTTTCCCTGGTCTCCAAGGAGATGCGGAGCCCAAACTTGGGCTT
GTGGCGCGGGGAAAGCCATCATGATGGACTGTACCCACAGCCTTGGTCGG
ACCCAACGGGGGGCTCGGAGGAAAGGATGAAAGACCAAAAAGGAGGGGGG
GGAAGGCCAGAGGGGGGCCGGGGGCAGAAATTGCGTCAATTTGCGTGTTT
GGGCAGACTTATCGGCCAAGCCCTTTTGGATGAACGGCTCCTTGATATTC
GCTTCGCAGCCCCCCTGGTTGCTACCTTGGCCGGGCGGCAGGCTTCGCAA
TCCTTGCCGGCGGCCTTGGAGGAGATGGAGCGGGTCGATTCGGCCCTGGC
GCGACAGTTGCAGGCGCTGGCGGCCTCGACTGGACTTGCGCAGTGGTTTG
AAGCACCGGAAAGCGGGCAGCGAAGCGAGCGGCAGGAGCAGGAGGTCGGG
CCCGGGAAGATTGTGAGGGAGAGCGCGGATGCGGACGAGAGGGTGTCGGC
TTTGTGCCTGACGTTCTGCCTCCCAGGTGAGCCGGAGATCGGGTTGCTCG
GACCCTCAGGGGTGCCAGTCAAGCCGGGTGTAGAAGGTCTTAGGTCAGAC
GGCGGCCTGGGAGAGGATGTGACGCGTCAGAATCTTGGCCTCTACGTCCA
GCGCGTGCTTCAAGTCGGCCTCAGGGAGGCGGTCCGTCCCCAGGTAACTG
CCATGTTGACGGGCCTCCAGGACATCGTGCCGACAGGGGCGCTCTGGGTC
TTCACGGAGGAGGAAATAATGGCGATGGTGGGGGGGGTGGGGTCGGAGAT
GGGAAAGGACCCGGAGGAGATCCTGGAGGCCTTGGCCTGCGACCACGGAT
ACACCCGAGGGAGCCAGGCGGTGCGGTGGCTGGTGGAGATATTGGCCGAG
ATGACCCTTGAGGAGGAGCGTCATTTCCTCATGTTCGTGACGGGTAGCCC
CGGGCTGCCTGTTGGTGGCTTGATGGGGTGCTGCCCGCGCTTGACTGTGG
TGAAGAAGGTGGCGGAGGGACACGCGAGAGCCTTGGGGCAGGCGGGCGTG
GATGCCATGCTGCCGAGCGCGTCCACGTGCACAAATTACTTGAAATTACC
GGACTACTCGAGTCGGGCGGTGATGCGAGAGCGTTTGTTGCTGAGCCTGA
GGCATGGGCAGCATTCCTTTCACCTATCATGAGCAGTGGGTCCTGCCAGG
GCATCCGGAGGGTTGGCGACTAACAGGAAGGAGTGGCCCCATATCCACGT
CGGGAGACGACGGGAGTGTAAACCTGTGATTAGTTATAAGAAGCATACCG
CTGGCTGTTGAAGGCCTGTCGTGTACAGCTGCAGTACTGGCCCTGTGGCG
GTGCGAACAACGCGTGGGGGGACAGTGGGCACATCGTGGGGACGGCAAAC
CTCGAGGCCTACGCTCAGGGATGAGCATGTGTATGGGGTTCATAGGCGAG
CAAATAGGATAGTCAAAGAGGTTTCGGGCATGAAAGATTTTAAAGAAGCG
AATAGACTAATTGGCGCGGTTCCTTCTTGATTATCTTGGGCGGCATCTGA
TGTTGTAAGAGTCTTGCACCAAAGAATATCGCTGACAAGAGCATGAAGGA
CGCTATC

Coding sequence (CDS) from alignment at CM002469.1:466307..468563-

>rna6773 ID=rna6773|Name=rna6773|organism=Nannochloropsis gaditana|type=CDS|length=1830bp|location=Sequence derived from alignment at CM002469.1:466307..468563- (Nannochloropsis gaditana)
CACATGGTTTCCCTTTTAATGCCGCCCATGGCCTCCCCCTTGGCGCGTTC
CCAAGAGGAGATCAAGGATACCCTGGGCGACGCGGACCCTGCGTCCCACG
TCCTTGCCCACGCTGCGGCTCGGGAGCTAGTCTCTAGCGGAGGTGTCCGG
GAGGAGTGCTGGGTGATCAAGCCGCTCAGCGAGCGCATGGCACAAGAGCT
GCAGGACCCCGTTGCACTCGCAACCCAGCAATTGCCAGGGTGGTGCGACC
AGCTCTTGCGGTATGGCCCATTTTTGCTGCAATTTCGCGTCCGGAAAGAG
TACTTTCACCTATCCAGTTTCGGGCTGGGTCGTGCTGTACACCGTCTTCT
GCAACAGCAACGACAAGGGATGGATGGGCAAGGGGGAGGGGGAGGCGGGG
GAGGGGAAGGGGGGGGGACAGGGCGGCATGCTTCCCACGGTCATTCACAC
CAGGGAAGCCACCACCACCACCATCATCATCAGTATCGTCGCGCCCCCAC
CTCTGCCGTGCAGCAGCTCAAGGTACAGGTGTCGCGCCGGAAGCTCCTGG
CCTCGGCGGAGAAAGTCTTGGAGGAACACGGGTCCCGGCGGGTCTTGCTG
GAAACCGAGTTCTTCAACGAGCCTGGCACGGGCTCCGGCCCGACGGCCGA
GTTCTTTTCCCTGGTCTCCAAGGAGATGCGGAGCCCAAACTTGGGCTTGT
GGCGCGGGGAAAGCCATCATGATGGACTGTACCCACAGCCTTGGTCGGAC
CCAACGGGGGGCTCGGAGGAAAGGATGAAAGACCAAAAAGGAGGGGGGGG
AAGGCCAGAGGGGGGCCGGGGGCAGAAATTGCGTCAATTTGCGTGTTTGG
GCAGACTTATCGGCCAAGCCCTTTTGGATGAACGGCTCCTTGATATTCGC
TTCGCAGCCCCCCTGGTTGCTACCTTGGCCGGGCGGCAGGCTTCGCAATC
CTTGCCGGCGGCCTTGGAGGAGATGGAGCGGGTCGATTCGGCCCTGGCGC
GACAGTTGCAGGCGCTGGCGGCCTCGACTGGACTTGCGCAGTGGTTTGAA
GCACCGGAAAGCGGGCAGCGAAGCGAGCGGCAGGAGCAGGAGGTCGGGCC
CGGGAAGATTGTGAGGGAGAGCGCGGATGCGGACGAGAGGGTGTCGGCTT
TGTGCCTGACGTTCTGCCTCCCAGGTGAGCCGGAGATCGGGTTGCTCGGA
CCCTCAGGGGTGCCAGTCAAGCCGGGTGTAGAAGGTCTTAGGTCAGACGG
CGGCCTGGGAGAGGATGTGACGCGTCAGAATCTTGGCCTCTACGTCCAGC
GCGTGCTTCAAGTCGGCCTCAGGGAGGCGGTCCGTCCCCAGGTAACTGCC
ATGTTGACGGGCCTCCAGGACATCGTGCCGACAGGGGCGCTCTGGGTCTT
CACGGAGGAGGAAATAATGGCGATGGTGGGGGGGGTGGGGTCGGAGATGG
GAAAGGACCCGGAGGAGATCCTGGAGGCCTTGGCCTGCGACCACGGATAC
ACCCGAGGGAGCCAGGCGGTGCGGTGGCTGGTGGAGATATTGGCCGAGAT
GACCCTTGAGGAGGAGCGTCATTTCCTCATGTTCGTGACGGGTAGCCCCG
GGCTGCCTGTTGGTGGCTTGATGGGGTGCTGCCCGCGCTTGACTGTGGTG
AAGAAGGTGGCGGAGGGACACGCGAGAGCCTTGGGGCAGGCGGGCGTGGA
TGCCATGCTGCCGAGCGCGTCCACGTGCACAAATTACTTGAAATTACCGG
ACTACTCGAGTCGGGCGGTGATGCGAGAGCGTTTGTTGCTGAGCCTGAGG
CATGGGCAGCATTCCTTTCACCTATCATGA

Synonyms

Publications